| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86609618
Identifier: 86609618
GI number: 86609618
Start: 2274847
End: 2275374
Strand: Direct
Name: 86609618
Synonym: CYB_2171
Alternate gene names: NA
Gene position: 2274847-2275374 (Clockwise)
Preceding gene: 86609614
Following gene: 86609619
Centisome position: 74.67
GC content: 57.95
Gene sequence:
>528_bases TTGTCACATAGCTACGACGATTTTTTCACCTCCATCACAGAGGTTGGCGGGAAAAGTCCTCTTCCCAGCCAGGGCTTTGA TCTGCCGGCGGATTTGTTCGATCAAGTCCCTGAACGGCCGGTGTCCCATCCGGAGTTCACCCTGTCCATCTGCCATCCTG TCCGGCCCTGCAGCTACATCCTGCGGGAGAGTATCTACACGGTTGGACGGGATCCCTCCAACGCCATCCAGATCGTCAAT CGGTTTGTCTCGCGTCACCACGCTTACCTGGTGCGGGTGCCCACCAAGTCCAACCGGACAGGGTTTACCTATTGCCTGAT CGACGGCAACCGCAAGGGCCAGTCCAGTACCAATGGGGTGTTTGTCAACGGCACGCGGGTGGCTACTCACTACCTGAGGA GCGGAGATGTCATCTATTTCGGGCCAGAGATCCGCGCCTATTTCTTCGAGGTGGCCCGCATTCTCCCTGTGAACCCCTTT GACATCGGCCCTGGCCTTGGCGAAGAGCTTCAGCTTCCCCACGCATAG
Upstream 100 bases:
>100_bases CCTTTGAAAGCAGTAGGGTTTTGGGGAACTATAGGTAAGACTTTGAATTTGGAAAGCCAAGCTGCTGTAGATGGCGTTGA GCGTTGAGGGGGGAAGGCCG
Downstream 100 bases:
>100_bases GAGCTCACTGCAACTGTTGACAGACCCGAAGCTGCATCGCTAGATTAATTAAGCTGGTTAAGCAATGTGAATTGGGGCAT CGCCAAGCGGTAAGGCAGCG
Product: FHA domain-containing protein
Products: NA
Alternate protein names: Diguanylate Cyclase/Phosphodiesterase; Two-Component Sensor Histidine Kinase; FHA Domain Containing Protein; FHA Domain Protein; Diguanylate Cyclase/Phosphodiesterase With PAS/PAC Sensor; Diguanylate Cyclase; GAF Sensor Signal Transduction Histidine Kinase; Vault Protein Inter-Alpha-Trypsin
Number of amino acids: Translated: 175; Mature: 174
Protein sequence:
>175_residues MSHSYDDFFTSITEVGGKSPLPSQGFDLPADLFDQVPERPVSHPEFTLSICHPVRPCSYILRESIYTVGRDPSNAIQIVN RFVSRHHAYLVRVPTKSNRTGFTYCLIDGNRKGQSSTNGVFVNGTRVATHYLRSGDVIYFGPEIRAYFFEVARILPVNPF DIGPGLGEELQLPHA
Sequences:
>Translated_175_residues MSHSYDDFFTSITEVGGKSPLPSQGFDLPADLFDQVPERPVSHPEFTLSICHPVRPCSYILRESIYTVGRDPSNAIQIVN RFVSRHHAYLVRVPTKSNRTGFTYCLIDGNRKGQSSTNGVFVNGTRVATHYLRSGDVIYFGPEIRAYFFEVARILPVNPF DIGPGLGEELQLPHA >Mature_174_residues SHSYDDFFTSITEVGGKSPLPSQGFDLPADLFDQVPERPVSHPEFTLSICHPVRPCSYILRESIYTVGRDPSNAIQIVNR FVSRHHAYLVRVPTKSNRTGFTYCLIDGNRKGQSSTNGVFVNGTRVATHYLRSGDVIYFGPEIRAYFFEVARILPVNPFD IGPGLGEELQLPHA
Specific function: Unknown
COG id: COG1716
COG function: function code T; FOG: FHA domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19573; Mature: 19442
Theoretical pI: Translated: 7.19; Mature: 7.19
Prosite motif: PS50006 FHA_DOMAIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHSYDDFFTSITEVGGKSPLPSQGFDLPADLFDQVPERPVSHPEFTLSICHPVRPCSYI CCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEECCCCCHHHHH LRESIYTVGRDPSNAIQIVNRFVSRHHAYLVRVPTKSNRTGFTYCLIDGNRKGQSSTNGV HHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCE FVNGTRVATHYLRSGDVIYFGPEIRAYFFEVARILPVNPFDIGPGLGEELQLPHA EEECHHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SHSYDDFFTSITEVGGKSPLPSQGFDLPADLFDQVPERPVSHPEFTLSICHPVRPCSYI CCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEECCCCCHHHHH LRESIYTVGRDPSNAIQIVNRFVSRHHAYLVRVPTKSNRTGFTYCLIDGNRKGQSSTNGV HHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCE FVNGTRVATHYLRSGDVIYFGPEIRAYFFEVARILPVNPFDIGPGLGEELQLPHA EEECHHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA