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The map label for this gene is ydcM [C]

Identifier: 86609594

GI number: 86609594

Start: 2247372

End: 2248565

Strand: Direct

Name: ydcM [C]

Synonym: CYB_2147

Alternate gene names: 86609594

Gene position: 2247372-2248565 (Clockwise)

Preceding gene: 86609593

Following gene: 86609595

Centisome position: 73.76

GC content: 55.19

Gene sequence:

>1194_bases
ATGACCCAAGTCCTGACCGTCTCCTGCAAGCTCAAGGTGTCTCAGTCGCAAGCCGCAAAGTTGGATGCGACAACGGATGC
CTTTGTGCAGGCGTTGAACTGGGTCAACCAAAACACACCAGAAAAAGTAGTCAACGCAGTCAAACTCCAGTCCCTTTGCT
ATTACCAGATTCGCGCTCGGTTTGGCTTGTCCAGTAACTTGACTCAGCAGGTCTGCAGACGGCTGGCCGGTGCCCGTAAA
GTTGCCCGACAGAAAAACCGTCCGGTCAAAGCGTTCAAGAGAGGCTTTGCGACCTACGATGCACGTATCTTCTCGTTTCG
CGAGAAAGACTGGACAGTGTCGCTTGCCACGGTTGATGGAAGAGAACGCTTTGAACTAGCCATTGGCAACTACCAGCGTG
GGATGCTGGCTGGTTCTAACCCCAAATCGGCCACCCTAGTCCAGCGGAAGGATGGCTCCTACTACATCCAGATTTGCGTA
GAGAAAAACCCGCCCAAGCAACAAGATACCGACAAGGTGATCGGGGTGGACTTGGGCAGGACGGATATCGCCCATACGTC
AGAGGGGGACAACTGGAATGGACAGCAGTTGAACCGAATCCGAGACCACTACTCCAAGCTGAGGGCGGCACTCCAACGCA
AAGCCAGTAAGGGCACACGCAGTTCGCGGCGCAGATGCCGTCAACTGTTGCAACGGCTGTCTGGCAAGGAAAGACGCTTT
CAGGCGTGGGTCAATCATCGAATCTCCAAAGCTATTGTCTCTAGGGCAAAGGCGACAAACAGCGCTCTTGCTCTGGAAGA
CTTGACAGGGATTCGGGAAAGGGTCAATCAACAGCCACGCAGCAAAGCCGAGCGGCGTAGGACCAACAGTTGGGCGTTCT
ACCAACTACGTCAGTTTCTGGAGTACAAGGCTCTGCGTGCGGGGGTTGCTCTGATTCTTGTGCCGCCTGCCTACACGTCG
CAGACCTGCCACCGGTGTTTGCACATTCATCCCGACCCTGAGCAATCCTACCGCAGTGGGAAGCAGTTTAAGTGTGGACA
CTGTGGATGGGAAGGGGATGCGGATTTGAATGGTGCGAATGTGATTGCGCTTTTGGGGGCTGTCGTAAACCAGCCTAGAG
GTTCGTGGTTGGCTTGCCAACTGCAGGGCTACCGAAAGCCCGCCCTGTACTGCGAAGCAGTCAGGGTCGGGTAG

Upstream 100 bases:

>100_bases
GCAATTCTGGCGGCAGGATAACTCAGCTAGAAATCGCAGGAGCCCCGCACTGTACCCGTAGGGTCAGTGTCGGGAGGAAT
GCGGAAGTTATGATAGAACC

Downstream 100 bases:

>100_bases
TTTACATGGTTCCCGGTGCCGTTGTCTTCTCTGAGATGCGATCTCCTCAGCCAGGTATTCTCGATCCAAGTCGCTCCCAT
TGGCCGGGGGCCAGGAACTG

Product: ISSoc1, transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 396

Protein sequence:

>397_residues
MTQVLTVSCKLKVSQSQAAKLDATTDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRARFGLSSNLTQQVCRRLAGARK
VARQKNRPVKAFKRGFATYDARIFSFREKDWTVSLATVDGRERFELAIGNYQRGMLAGSNPKSATLVQRKDGSYYIQICV
EKNPPKQQDTDKVIGVDLGRTDIAHTSEGDNWNGQQLNRIRDHYSKLRAALQRKASKGTRSSRRRCRQLLQRLSGKERRF
QAWVNHRISKAIVSRAKATNSALALEDLTGIRERVNQQPRSKAERRRTNSWAFYQLRQFLEYKALRAGVALILVPPAYTS
QTCHRCLHIHPDPEQSYRSGKQFKCGHCGWEGDADLNGANVIALLGAVVNQPRGSWLACQLQGYRKPALYCEAVRVG

Sequences:

>Translated_397_residues
MTQVLTVSCKLKVSQSQAAKLDATTDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRARFGLSSNLTQQVCRRLAGARK
VARQKNRPVKAFKRGFATYDARIFSFREKDWTVSLATVDGRERFELAIGNYQRGMLAGSNPKSATLVQRKDGSYYIQICV
EKNPPKQQDTDKVIGVDLGRTDIAHTSEGDNWNGQQLNRIRDHYSKLRAALQRKASKGTRSSRRRCRQLLQRLSGKERRF
QAWVNHRISKAIVSRAKATNSALALEDLTGIRERVNQQPRSKAERRRTNSWAFYQLRQFLEYKALRAGVALILVPPAYTS
QTCHRCLHIHPDPEQSYRSGKQFKCGHCGWEGDADLNGANVIALLGAVVNQPRGSWLACQLQGYRKPALYCEAVRVG
>Mature_396_residues
TQVLTVSCKLKVSQSQAAKLDATTDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRARFGLSSNLTQQVCRRLAGARKV
ARQKNRPVKAFKRGFATYDARIFSFREKDWTVSLATVDGRERFELAIGNYQRGMLAGSNPKSATLVQRKDGSYYIQICVE
KNPPKQQDTDKVIGVDLGRTDIAHTSEGDNWNGQQLNRIRDHYSKLRAALQRKASKGTRSSRRRCRQLLQRLSGKERRFQ
AWVNHRISKAIVSRAKATNSALALEDLTGIRERVNQQPRSKAERRRTNSWAFYQLRQFLEYKALRAGVALILVPPAYTSQ
TCHRCLHIHPDPEQSYRSGKQFKCGHCGWEGDADLNGANVIALLGAVVNQPRGSWLACQLQGYRKPALYCEAVRVG

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=232, Percent_Identity=27.5862068965517, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 44942; Mature: 44811

Theoretical pI: Translated: 10.87; Mature: 10.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQVLTVSCKLKVSQSQAAKLDATTDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRAR
CCCEEEEEEEEEECCHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLTQQVCRRLAGARKVARQKNRPVKAFKRGFATYDARIFSFREKDWTVSLATVDG
CCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEEECCCEEEEEEEECC
RERFELAIGNYQRGMLAGSNPKSATLVQRKDGSYYIQICVEKNPPKQQDTDKVIGVDLGR
CCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCEEEEECCC
TDIAHTSEGDNWNGQQLNRIRDHYSKLRAALQRKASKGTRSSRRRCRQLLQRLSGKERRF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH
QAWVNHRISKAIVSRAKATNSALALEDLTGIRERVNQQPRSKAERRRTNSWAFYQLRQFL
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHH
EYKALRAGVALILVPPAYTSQTCHRCLHIHPDPEQSYRSGKQFKCGHCGWEGDADLNGAN
HHHHHHCCEEEEEECCCCCHHHHHHHCCCCCCHHHHHHCCCCEECCCCCCCCCCCCCCHH
VIALLGAVVNQPRGSWLACQLQGYRKPALYCEAVRVG
HHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEEECC
>Mature Secondary Structure 
TQVLTVSCKLKVSQSQAAKLDATTDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRAR
CCEEEEEEEEEECCHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLTQQVCRRLAGARKVARQKNRPVKAFKRGFATYDARIFSFREKDWTVSLATVDG
CCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEEECCCEEEEEEEECC
RERFELAIGNYQRGMLAGSNPKSATLVQRKDGSYYIQICVEKNPPKQQDTDKVIGVDLGR
CCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCEEEEECCC
TDIAHTSEGDNWNGQQLNRIRDHYSKLRAALQRKASKGTRSSRRRCRQLLQRLSGKERRF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH
QAWVNHRISKAIVSRAKATNSALALEDLTGIRERVNQQPRSKAERRRTNSWAFYQLRQFL
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHH
EYKALRAGVALILVPPAYTSQTCHRCLHIHPDPEQSYRSGKQFKCGHCGWEGDADLNGAN
HHHHHHCCEEEEEECCCCCHHHHHHHCCCCCCHHHHHHCCCCEECCCCCCCCCCCCCCHH
VIALLGAVVNQPRGSWLACQLQGYRKPALYCEAVRVG
HHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]