| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is yloA [H]
Identifier: 86609586
GI number: 86609586
Start: 2231650
End: 2233479
Strand: Direct
Name: yloA [H]
Synonym: CYB_2139
Alternate gene names: 86609586
Gene position: 2231650-2233479 (Clockwise)
Preceding gene: 86609584
Following gene: 86609592
Centisome position: 73.25
GC content: 60.66
Gene sequence:
>1830_bases ATGCAGCCCGTTGATCTGACCACCCTGCGCGCTGTGCTGGCAGATCTAGCCCAGGCTAAGACAGGTCGGGATCTAGTGTT GCCTGCCCGCGTGGAATGGATCCAACAGACCGATCTGTGGACGGTGGTCATTGGCTTGCGCACCCTCACTGCCCGTCCCT GCCTGCTGTTGTGCTGGCACCCTCAGGCGGCCCGTCTCCACCTCTGTCAGCCTCCTCCCAAAGAGCCGGATGGCTTTCAA TTTAGCCAGTTCCTCCAACGGCACCTGAAGGGTTTGGCTCTGACGGAGCTGGCTCTGCTGGAGGATTGGGAACGGGTGAT TGACTTGCGCTTTGCCCCTCGGCCCGGGGATCCCCCTTATCGCCATCTCTACCTGGAGGTGATGGGCAAGCACAGCAATG CCATTTTGGTGGACGAGGCGGGCATGATCTTGGCCAGTGGCCATGGGGTAAGCGAGCGCCAATCGCGAATCCGTCCAGTG CAGCCGGGCCTGCCCTACGAGGCTCCTCCGGCCCTAACCGACCCGATCCCGCAGCGATCCGAGCCCTTCTCCTGCTGGCA AGAGCGCGTTGCCCTGATCCCCGGCCCCATCGGCCAACGGCTGTTGCGCTGTTATCGCGGCCTCAGTCGGCACTTGGTGG AAGCGATGTGCCATCAGGCTGGGATCCCGCCGCAAACCTCCACCGATCACCTCTCTGCCCGCGATTGGCAGGCACTGTTT GCCAGGTGGCAAGACTGGTTAACCCGTCTGGAAACAGGCCAGTTTGACCCAGCTCCCACTCCCCAGGGATACACCGTTCT CGGCTGGGCAAGCGGTGCCGTTCCCGTTAGCGGGACGGAGTCCCTGCAACAACCTTCTCGACTCAATCTGCACCAACTTC TGGAAGGCTACTACCAGGCTCAGCTTAACCGCGAACAGTTTGAGCGAGAGCGCCACCGTCTGCTGCAAAGGGTATCCACC CTGCTGAAAAAGCTCTATCAGCGGCGAGAGCAATTTGAGGCAATGCTGGCCGACTCCACCCAGGCGGAAGCCTCCAAGCA GGCTGCCGACTTGTTGATGGCCCACCTCCACCTCTGGCGGCCAGGGTTGCATCACATCGAGCTGCCGGATTTTGCCAGCG GCCAGACGGTCAAGATCCCTCTCGACCCCGAAAAAAATGCCATTCTCAATGCCCAAGCCTACTACCGCAAGCACCGCAAA CAAAAACGGGCCCAGGATGCTATCCGGCCCCTACAAGAGGCGCTTGGCCAAGAGATCCTCTACCTCGAGCAGGTGGAAGC GTCTCTACAGCAGCTGGAAACCTATCGGGATCCCCAAGACTTGACCACCCTCAAGGAAATTGAGACCGAGCTGATTGAAC AGCGCTACTTGGAGAGTCCCACTCGCAACAGCGGGACAGAGTCTCTGCGGGCGAGCTCAAAACATGCCTCACCGGCAACC TTCAACCCCCACCGCTTTACCAGCCCCAGTGGCTTCTCCATTTGGGTGGGGCGCAACAACCTGCAAAATGATCAGCTCAC CTTTCGCGTGGCTCAGGAACACGATTGGTGGTTTCATGCCCAAGAGATCCCCGGCAGTCATGTGCTGCTGCGCTTGCCCC CCGGGGCTGTAGCAGAAAGCGAAGATCTGCAGGCGGCTGCTGATTTGGCGGCCCATTTCAGCCGCGGTCGCCTCAGCGAA CAGGTGCCGGTAGTCTACACTCGCCCGAAACTGGTGTTCAAACCCAAGGGATCCCCGCCCGGCATGGTCGTTTACAAACA GGAGCAGGTGCTTTGGGGGCGGCCCAGCCATGCGCAGCTGCTCATTGCGTCAGCCCTTGGGCCACACTGA
Upstream 100 bases:
>100_bases TCCGTCCCGCTAACGCGAATGGAAACAAACAGAATGCTATCGCTGCATAGTTGAACAGTGATGTTCAGCAGTGTTCAGCG TAAATGTATCAGCAACAGGG
Downstream 100 bases:
>100_bases CGCAACTGGTTACTTTGTTTCTGGCCAAGTGGGCAGGTTCGAGGCATTCAAGGGAGAACTTCGAGGGAGTAAGCGGCGCT GCGGCCATGGCGGCTGGGAT
Product: fibronectin-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 609; Mature: 609
Protein sequence:
>609_residues MQPVDLTTLRAVLADLAQAKTGRDLVLPARVEWIQQTDLWTVVIGLRTLTARPCLLLCWHPQAARLHLCQPPPKEPDGFQ FSQFLQRHLKGLALTELALLEDWERVIDLRFAPRPGDPPYRHLYLEVMGKHSNAILVDEAGMILASGHGVSERQSRIRPV QPGLPYEAPPALTDPIPQRSEPFSCWQERVALIPGPIGQRLLRCYRGLSRHLVEAMCHQAGIPPQTSTDHLSARDWQALF ARWQDWLTRLETGQFDPAPTPQGYTVLGWASGAVPVSGTESLQQPSRLNLHQLLEGYYQAQLNREQFERERHRLLQRVST LLKKLYQRREQFEAMLADSTQAEASKQAADLLMAHLHLWRPGLHHIELPDFASGQTVKIPLDPEKNAILNAQAYYRKHRK QKRAQDAIRPLQEALGQEILYLEQVEASLQQLETYRDPQDLTTLKEIETELIEQRYLESPTRNSGTESLRASSKHASPAT FNPHRFTSPSGFSIWVGRNNLQNDQLTFRVAQEHDWWFHAQEIPGSHVLLRLPPGAVAESEDLQAAADLAAHFSRGRLSE QVPVVYTRPKLVFKPKGSPPGMVVYKQEQVLWGRPSHAQLLIASALGPH
Sequences:
>Translated_609_residues MQPVDLTTLRAVLADLAQAKTGRDLVLPARVEWIQQTDLWTVVIGLRTLTARPCLLLCWHPQAARLHLCQPPPKEPDGFQ FSQFLQRHLKGLALTELALLEDWERVIDLRFAPRPGDPPYRHLYLEVMGKHSNAILVDEAGMILASGHGVSERQSRIRPV QPGLPYEAPPALTDPIPQRSEPFSCWQERVALIPGPIGQRLLRCYRGLSRHLVEAMCHQAGIPPQTSTDHLSARDWQALF ARWQDWLTRLETGQFDPAPTPQGYTVLGWASGAVPVSGTESLQQPSRLNLHQLLEGYYQAQLNREQFERERHRLLQRVST LLKKLYQRREQFEAMLADSTQAEASKQAADLLMAHLHLWRPGLHHIELPDFASGQTVKIPLDPEKNAILNAQAYYRKHRK QKRAQDAIRPLQEALGQEILYLEQVEASLQQLETYRDPQDLTTLKEIETELIEQRYLESPTRNSGTESLRASSKHASPAT FNPHRFTSPSGFSIWVGRNNLQNDQLTFRVAQEHDWWFHAQEIPGSHVLLRLPPGAVAESEDLQAAADLAAHFSRGRLSE QVPVVYTRPKLVFKPKGSPPGMVVYKQEQVLWGRPSHAQLLIASALGPH >Mature_609_residues MQPVDLTTLRAVLADLAQAKTGRDLVLPARVEWIQQTDLWTVVIGLRTLTARPCLLLCWHPQAARLHLCQPPPKEPDGFQ FSQFLQRHLKGLALTELALLEDWERVIDLRFAPRPGDPPYRHLYLEVMGKHSNAILVDEAGMILASGHGVSERQSRIRPV QPGLPYEAPPALTDPIPQRSEPFSCWQERVALIPGPIGQRLLRCYRGLSRHLVEAMCHQAGIPPQTSTDHLSARDWQALF ARWQDWLTRLETGQFDPAPTPQGYTVLGWASGAVPVSGTESLQQPSRLNLHQLLEGYYQAQLNREQFERERHRLLQRVST LLKKLYQRREQFEAMLADSTQAEASKQAADLLMAHLHLWRPGLHHIELPDFASGQTVKIPLDPEKNAILNAQAYYRKHRK QKRAQDAIRPLQEALGQEILYLEQVEASLQQLETYRDPQDLTTLKEIETELIEQRYLESPTRNSGTESLRASSKHASPAT FNPHRFTSPSGFSIWVGRNNLQNDQLTFRVAQEHDWWFHAQEIPGSHVLLRLPPGAVAESEDLQAAADLAAHFSRGRLSE QVPVVYTRPKLVFKPKGSPPGMVVYKQEQVLWGRPSHAQLLIASALGPH
Specific function: Unknown
COG id: COG1293
COG function: function code K; Predicted RNA-binding protein homologous to eukaryotic snRNP
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the SDCCAG1 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008532 - InterPro: IPR008616 [H]
Pfam domain/function: PF05670 DUF814; PF05833 FbpA [H]
EC number: NA
Molecular weight: Translated: 69044; Mature: 69044
Theoretical pI: Translated: 7.99; Mature: 7.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQPVDLTTLRAVLADLAQAKTGRDLVLPARVEWIQQTDLWTVVIGLRTLTARPCLLLCWH CCCCCHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHCCHHHHHHHHHHHCCCCEEEEEEC PQAARLHLCQPPPKEPDGFQFSQFLQRHLKGLALTELALLEDWERVIDLRFAPRPGDPPY CCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHH RHLYLEVMGKHSNAILVDEAGMILASGHGVSERQSRIRPVQPGLPYEAPPALTDPIPQRS HEEHHHEECCCCCEEEEECCCEEEECCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC EPFSCWQERVALIPGPIGQRLLRCYRGLSRHLVEAMCHQAGIPPQTSTDHLSARDWQALF CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH ARWQDWLTRLETGQFDPAPTPQGYTVLGWASGAVPVSGTESLQQPSRLNLHQLLEGYYQA HHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHCCCCCCCHHHHHHHHHHH QLNREQFERERHRLLQRVSTLLKKLYQRREQFEAMLADSTQAEASKQAADLLMAHLHLWR HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHC PGLHHIELPDFASGQTVKIPLDPEKNAILNAQAYYRKHRKQKRAQDAIRPLQEALGQEIL CCCCEECCCCCCCCCEEEEECCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YLEQVEASLQQLETYRDPQDLTTLKEIETELIEQRYLESPTRNSGTESLRASSKHASPAT HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCC FNPHRFTSPSGFSIWVGRNNLQNDQLTFRVAQEHDWWFHAQEIPGSHVLLRLPPGAVAES CCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCEEEECCCCCCEEEEECCCCCCCCC EDLQAAADLAAHFSRGRLSEQVPVVYTRPKLVFKPKGSPPGMVVYKQEQVLWGRPSHAQL HHHHHHHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCCEEEEECCHHCCCCCCCHHE LIASALGPH EEEHHCCCC >Mature Secondary Structure MQPVDLTTLRAVLADLAQAKTGRDLVLPARVEWIQQTDLWTVVIGLRTLTARPCLLLCWH CCCCCHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHCCHHHHHHHHHHHCCCCEEEEEEC PQAARLHLCQPPPKEPDGFQFSQFLQRHLKGLALTELALLEDWERVIDLRFAPRPGDPPY CCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHH RHLYLEVMGKHSNAILVDEAGMILASGHGVSERQSRIRPVQPGLPYEAPPALTDPIPQRS HEEHHHEECCCCCEEEEECCCEEEECCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC EPFSCWQERVALIPGPIGQRLLRCYRGLSRHLVEAMCHQAGIPPQTSTDHLSARDWQALF CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH ARWQDWLTRLETGQFDPAPTPQGYTVLGWASGAVPVSGTESLQQPSRLNLHQLLEGYYQA HHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHCCCCCCCHHHHHHHHHHH QLNREQFERERHRLLQRVSTLLKKLYQRREQFEAMLADSTQAEASKQAADLLMAHLHLWR HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHC PGLHHIELPDFASGQTVKIPLDPEKNAILNAQAYYRKHRKQKRAQDAIRPLQEALGQEIL CCCCEECCCCCCCCCEEEEECCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YLEQVEASLQQLETYRDPQDLTTLKEIETELIEQRYLESPTRNSGTESLRASSKHASPAT HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCC FNPHRFTSPSGFSIWVGRNNLQNDQLTFRVAQEHDWWFHAQEIPGSHVLLRLPPGAVAES CCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCEEEECCCCCCEEEEECCCCCCCCC EDLQAAADLAAHFSRGRLSEQVPVVYTRPKLVFKPKGSPPGMVVYKQEQVLWGRPSHAQL HHHHHHHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCCEEEEECCHHCCCCCCCHHE LIASALGPH EEEHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377; 9534248 [H]