| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is yjeF [C]
Identifier: 86609499
GI number: 86609499
Start: 2150252
End: 2151814
Strand: Direct
Name: yjeF [C]
Synonym: CYB_2051
Alternate gene names: 86609499
Gene position: 2150252-2151814 (Clockwise)
Preceding gene: 86609498
Following gene: 86609509
Centisome position: 70.58
GC content: 62.7
Gene sequence:
>1563_bases ATGGGTTCTCGTTGCCAGTTCGATCCGGCCATCAGCCTGGTCAGTTCCGCACAGATGCAGCGCATTGAGGAGCAGATCTT CTCTGCCGGCATGCCCGTTGCCGCTCTGATGGAGAAGGTGGGGCTGGCCGTTGTTGCTCAGTTGCAGAAGGATTTTCCGC AAGCCCATCGCATTGGGATCCTCTGTGGGACAGGGCACAACGGTGGCGATGGGTTGGTGGTTGGGCGGGAGCTATGGCTG GCCCAAAAGTCGGTGAAGGTGTGGCTGGGCAAGCCGGATCTCAAACCCCTGACGGCAGACCACGCCCGCTATCTCAAGGC GCTGGGGGCAGAGTTTGTGGAGAGTCTTGAAGAGCTGGCCGATTGCGATTTGTTAATTGATGCCCTGTTTGGGATCGGTC TGAACCGGCCTTTGGGGGAGCCTTGGGCGGGGGCGGTGGGGTGGGCCAATGGCAGTGGGATCCCCATCCTCAGCCTGGAT TTGCCGTCTGGCCTCAACGACCAAACCGGGGAAGTCTGGGGCTGCTGCATTCGCGCCAGCCATACCTATACCCTTGGCCT TTGGAAACGGGGGCTGTGGCAGGAAGCAGCTCTGCCTTGGGTAGGACGGTTACATCGCGTTGATTTTGGGATCCCCCCTT GGGCCTGCCCAGAGGATGAGGTTCCCCGGTTGTTGCTGCGGCCTTGGCAGCACTTTCCTGCGGATCCCCCTTTGGATACC CACAAATACCGCCAGGGATCCCTGTTGTTGGTGGCAGGCTCGGCAGCCTATGCTGGAGCAGCGGTGTTGGCGGGGCTGGG ATCCCGCGCCAGCGGGGTGGGCATGGTGACGATGGCGGCGCCGGCGGAGTTGAAAGGACTGATCCACAGCGCCTTGCCAG AGGTTTTGGTTCATGCCTGGGAAGGGATCCCTTCTCTGCCGCCGGTTGCCGAGAAACCCTTTCAGGCGGTGGCCGTGGGG CCGGGCTTGGGAGAAACCCGTTTGCCCCTGCTGGAGATCCTGCTGCGGGATTGGGCCGGGATCCCCTGGGTGATCGATGC GGATGGGCTGAATGCTCTGGCGGAGATGGGGGTAGAGCGCCTTCAGGAAAAAGGGATCCAGGCCATCCTCACCCCCCACC TGGGGGAATTTCGGCGGCTTTTTCCGGGGATCCCGCTTGGGGATCGCATCGAGGCAGCCCAAAGGGCGGCAGCCCAGAGT GGAGCAGTGGTGGTTTTGAAAGGGGCGCGGACGGTGATCGCCTCTCCCACTGGGGAATGCTGGGTGAACCCGGAAAGCAC ACCGGCTTTGGCCCGCGGTGGCAGCGGCGATGTCTTGACCGGTTTGATCGGGGGCCTAGTGGCGCGAAGAAGAGCTCAAG CCGGTCAACCTTTGGACGCTCCCGCCCTGCTCAGTTGCGCCTGTGCGGGGGTGTGGTGGCATGCTCAGGCGGCTGTCCAT CTGGCGCAAGAACGCGGCCTAACGGGAGTGGATCCGGCACGGCTGGCGGAGCATTTGCCCCAGGCGCTGCAAGCTCTTCA ACAGGAGGAAGTTGTTCATACCGTGTCGCAGGCGGGTGAATAA
Upstream 100 bases:
>100_bases CGGATGGGAATGTGATAGAGCTAAGCTCGATTAGCGCAACTTAGCCATGAGCCATCTCCCCTCAGCAATGCCGCCGGTTG CAACAGCGTTGCGTAGCGAT
Downstream 100 bases:
>100_bases ATACTCTAAGTCATAGCCCAAGCCTTCCTGCTTGCTCCTACCCTCCACTAGGGGTCACCCGGTAAAGGGCACAGGAATAG AATTCTGGCTGGTTACTCGA
Product: carbohydrate kinase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 520; Mature: 519
Protein sequence:
>520_residues MGSRCQFDPAISLVSSAQMQRIEEQIFSAGMPVAALMEKVGLAVVAQLQKDFPQAHRIGILCGTGHNGGDGLVVGRELWL AQKSVKVWLGKPDLKPLTADHARYLKALGAEFVESLEELADCDLLIDALFGIGLNRPLGEPWAGAVGWANGSGIPILSLD LPSGLNDQTGEVWGCCIRASHTYTLGLWKRGLWQEAALPWVGRLHRVDFGIPPWACPEDEVPRLLLRPWQHFPADPPLDT HKYRQGSLLLVAGSAAYAGAAVLAGLGSRASGVGMVTMAAPAELKGLIHSALPEVLVHAWEGIPSLPPVAEKPFQAVAVG PGLGETRLPLLEILLRDWAGIPWVIDADGLNALAEMGVERLQEKGIQAILTPHLGEFRRLFPGIPLGDRIEAAQRAAAQS GAVVVLKGARTVIASPTGECWVNPESTPALARGGSGDVLTGLIGGLVARRRAQAGQPLDAPALLSCACAGVWWHAQAAVH LAQERGLTGVDPARLAEHLPQALQALQQEEVVHTVSQAGE
Sequences:
>Translated_520_residues MGSRCQFDPAISLVSSAQMQRIEEQIFSAGMPVAALMEKVGLAVVAQLQKDFPQAHRIGILCGTGHNGGDGLVVGRELWL AQKSVKVWLGKPDLKPLTADHARYLKALGAEFVESLEELADCDLLIDALFGIGLNRPLGEPWAGAVGWANGSGIPILSLD LPSGLNDQTGEVWGCCIRASHTYTLGLWKRGLWQEAALPWVGRLHRVDFGIPPWACPEDEVPRLLLRPWQHFPADPPLDT HKYRQGSLLLVAGSAAYAGAAVLAGLGSRASGVGMVTMAAPAELKGLIHSALPEVLVHAWEGIPSLPPVAEKPFQAVAVG PGLGETRLPLLEILLRDWAGIPWVIDADGLNALAEMGVERLQEKGIQAILTPHLGEFRRLFPGIPLGDRIEAAQRAAAQS GAVVVLKGARTVIASPTGECWVNPESTPALARGGSGDVLTGLIGGLVARRRAQAGQPLDAPALLSCACAGVWWHAQAAVH LAQERGLTGVDPARLAEHLPQALQALQQEEVVHTVSQAGE >Mature_519_residues GSRCQFDPAISLVSSAQMQRIEEQIFSAGMPVAALMEKVGLAVVAQLQKDFPQAHRIGILCGTGHNGGDGLVVGRELWLA QKSVKVWLGKPDLKPLTADHARYLKALGAEFVESLEELADCDLLIDALFGIGLNRPLGEPWAGAVGWANGSGIPILSLDL PSGLNDQTGEVWGCCIRASHTYTLGLWKRGLWQEAALPWVGRLHRVDFGIPPWACPEDEVPRLLLRPWQHFPADPPLDTH KYRQGSLLLVAGSAAYAGAAVLAGLGSRASGVGMVTMAAPAELKGLIHSALPEVLVHAWEGIPSLPPVAEKPFQAVAVGP GLGETRLPLLEILLRDWAGIPWVIDADGLNALAEMGVERLQEKGIQAILTPHLGEFRRLFPGIPLGDRIEAAQRAAAQSG AVVVLKGARTVIASPTGECWVNPESTPALARGGSGDVLTGLIGGLVARRRAQAGQPLDAPALLSCACAGVWWHAQAAVHL AQERGLTGVDPARLAEHLPQALQALQQEEVVHTVSQAGE
Specific function: Unknown
COG id: COG0063
COG function: function code G; Predicted sugar kinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 YjeF N-terminal domain [H]
Homologues:
Organism=Homo sapiens, GI91984773, Length=211, Percent_Identity=26.0663507109005, Blast_Score=73, Evalue=6e-13, Organism=Homo sapiens, GI119709830, Length=231, Percent_Identity=29.8701298701299, Blast_Score=67, Evalue=5e-11, Organism=Escherichia coli, GI1790609, Length=492, Percent_Identity=31.9105691056911, Blast_Score=166, Evalue=4e-42, Organism=Caenorhabditis elegans, GI17554656, Length=290, Percent_Identity=25.5172413793103, Blast_Score=69, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17509719, Length=163, Percent_Identity=29.4478527607362, Blast_Score=68, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6322698, Length=248, Percent_Identity=29.0322580645161, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI221329809, Length=161, Percent_Identity=32.9192546583851, Blast_Score=84, Evalue=3e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017953 - InterPro: IPR000631 - InterPro: IPR004443 [H]
Pfam domain/function: PF01256 Carb_kinase; PF03853 YjeF_N [H]
EC number: NA
Molecular weight: Translated: 55095; Mature: 54964
Theoretical pI: Translated: 6.02; Mature: 6.02
Prosite motif: PS01049 UPF0031_1 ; PS01050 UPF0031_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGSRCQFDPAISLVSSAQMQRIEEQIFSAGMPVAALMEKVGLAVVAQLQKDFPQAHRIGI CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHEEEE LCGTGHNGGDGLVVGRELWLAQKSVKVWLGKPDLKPLTADHARYLKALGAEFVESLEELA EEECCCCCCCCEEEHHHHHHHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH DCDLLIDALFGIGLNRPLGEPWAGAVGWANGSGIPILSLDLPSGLNDQTGEVWGCCIRAS HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEECC HTYTLGLWKRGLWQEAALPWVGRLHRVDFGIPPWACPEDEVPRLLLRPWQHFPADPPLDT CEEEEHHHHHCCHHHHCCCHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHCCCCCCCCC HKYRQGSLLLVAGSAAYAGAAVLAGLGSRASGVGMVTMAAPAELKGLIHSALPEVLVHAW CCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHH EGIPSLPPVAEKPFQAVAVGPGLGETRLPLLEILLRDWAGIPWVIDADGLNALAEMGVER CCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHH LQEKGIQAILTPHLGEFRRLFPGIPLGDRIEAAQRAAAQSGAVVVLKGARTVIASPTGEC HHHCCCCEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEECCCEEEECCCCCE WVNPESTPALARGGSGDVLTGLIGGLVARRRAQAGQPLDAPALLSCACAGVWWHAQAAVH EECCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH LAQERGLTGVDPARLAEHLPQALQALQQEEVVHTVSQAGE HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure GSRCQFDPAISLVSSAQMQRIEEQIFSAGMPVAALMEKVGLAVVAQLQKDFPQAHRIGI CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHEEEE LCGTGHNGGDGLVVGRELWLAQKSVKVWLGKPDLKPLTADHARYLKALGAEFVESLEELA EEECCCCCCCCEEEHHHHHHHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH DCDLLIDALFGIGLNRPLGEPWAGAVGWANGSGIPILSLDLPSGLNDQTGEVWGCCIRAS HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEECC HTYTLGLWKRGLWQEAALPWVGRLHRVDFGIPPWACPEDEVPRLLLRPWQHFPADPPLDT CEEEEHHHHHCCHHHHCCCHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHCCCCCCCCC HKYRQGSLLLVAGSAAYAGAAVLAGLGSRASGVGMVTMAAPAELKGLIHSALPEVLVHAW CCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHH EGIPSLPPVAEKPFQAVAVGPGLGETRLPLLEILLRDWAGIPWVIDADGLNALAEMGVER CCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHH LQEKGIQAILTPHLGEFRRLFPGIPLGDRIEAAQRAAAQSGAVVVLKGARTVIASPTGEC HHHCCCCEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEECCCEEEECCCCCE WVNPESTPALARGGSGDVLTGLIGGLVARRRAQAGQPLDAPALLSCACAGVWWHAQAAVH EECCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH LAQERGLTGVDPARLAEHLPQALQALQQEEVVHTVSQAGE HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]