| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86609419
Identifier: 86609419
GI number: 86609419
Start: 2065522
End: 2066715
Strand: Reverse
Name: 86609419
Synonym: CYB_1969
Alternate gene names: NA
Gene position: 2066715-2065522 (Counterclockwise)
Preceding gene: 86609420
Following gene: 86609418
Centisome position: 67.83
GC content: 51.34
Gene sequence:
>1194_bases ATGGTGTTTAGAGCCGACCGGATCCTGGCAGTGTTGCAGCAAAAGCGGGAGGCCTTTGCCACTTTTGATCAAAGGCTGTC GGAGCGCAGAGAATACTATAAGCAGGCCATGGAAAGCTTGTGCCAGTGGTCAAGCCTAGAGATTGCCGAAAAAATAGCTC CATTCCCTTTCCCAGGCGCTTTACCTACTGCAGAGTGGGATCGCTACTCCAATTGGAGGATCCCTTTTGAGCAGGAATGG GCCAATTACGAAGAAAGCCGCGATTGGGCGAAGTCGGTCATTGAAAATATTCCTACCTTTGCCGTAGATGGATCCCAGAT TTATCCCAGCAAAGATCTGTCAATACCGGTGGCGCTGGTGCAAATTGGCTGGTATGAAAACCATCATTGTGCAACAGGCT TGTACGAAAAAGACATTCAAGTGGATGTATTGACTCCAAGGGACCTGGGATCCGACAGCAGCGGCGAACCGAAAGAGCGA ATGGTTAACATGCGCCGCTTTCAAATGGAAATCGAGAGACTTGTAGAATACATTCAAAAATCTCAACCGGGATCCCGAAA ATTGGCCTTTTTGGACGGGGCGCTGGTGGCTACTTTTGCCGAAGTCTTTGAGCCAGAAAGCCAAGACTTTTATGTGCAGT GTTTGCTCCAGCTTCTGCGGGCCAGCGAGCAAAGCCGGATCCCTATCGTGGCCTACATAGACACCACCTACACTTCCGAT TTGGTGGCGTTGCTGAAGCATTGTTTTGACCTACCCGAAGCTCCACAGCTTCACGATGCGCAACTGCTCAGCCCCTGGTT GGAGTGGGGGGATCGCACACCTTTTTTCATCTGTGCCCGCGGCGGCAGCCTCAACCCCCAAGATGGGATCCTCAATCGCT ACCAAGAAATGCGAGAGCGAGTGGGATTTGTTTACCTGCGCACCAGTGACAACTTTCCGGCTCGCCTGGAAATACCCGTT TGGGTTTATGAGGCAGGACTGTTGGACTGGTTGGTGGATCTGGTTCGCTGTGAGGTGGTGATTGGGCGAGGTTATCCTTA TGTGCTGGAGACAGCCGATCAAATAGCCGTTATCCGCAATGAGGATCGCAACCTTTTCTTGCGTCTCATGCAAGATTGGG CCGCTCGCGAAAAGCTGAACCTAAGGCTATCCCGGAAAACAGTAAGTAAATTACAGCGGAGACGAGTTCGATGA
Upstream 100 bases:
>100_bases TTTGTCATCAGCCACGACGATACCTTTGAGCAAATGACAGAAAATGTTATTCGGGTGGAAAGGCACTCCGGATCCAAGTC GGTAGGGAGGGATCCCGCCT
Downstream 100 bases:
>100_bases GATTGGGAAAGGTAGTTCGCTCCAACAATCACTGTGATTATGTGGTGCAGGTGGACGATGCTTTAGAAGTCAAAAATCCG CCGGCTCCTGATGACTATGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 397; Mature: 397
Protein sequence:
>397_residues MVFRADRILAVLQQKREAFATFDQRLSERREYYKQAMESLCQWSSLEIAEKIAPFPFPGALPTAEWDRYSNWRIPFEQEW ANYEESRDWAKSVIENIPTFAVDGSQIYPSKDLSIPVALVQIGWYENHHCATGLYEKDIQVDVLTPRDLGSDSSGEPKER MVNMRRFQMEIERLVEYIQKSQPGSRKLAFLDGALVATFAEVFEPESQDFYVQCLLQLLRASEQSRIPIVAYIDTTYTSD LVALLKHCFDLPEAPQLHDAQLLSPWLEWGDRTPFFICARGGSLNPQDGILNRYQEMRERVGFVYLRTSDNFPARLEIPV WVYEAGLLDWLVDLVRCEVVIGRGYPYVLETADQIAVIRNEDRNLFLRLMQDWAAREKLNLRLSRKTVSKLQRRRVR
Sequences:
>Translated_397_residues MVFRADRILAVLQQKREAFATFDQRLSERREYYKQAMESLCQWSSLEIAEKIAPFPFPGALPTAEWDRYSNWRIPFEQEW ANYEESRDWAKSVIENIPTFAVDGSQIYPSKDLSIPVALVQIGWYENHHCATGLYEKDIQVDVLTPRDLGSDSSGEPKER MVNMRRFQMEIERLVEYIQKSQPGSRKLAFLDGALVATFAEVFEPESQDFYVQCLLQLLRASEQSRIPIVAYIDTTYTSD LVALLKHCFDLPEAPQLHDAQLLSPWLEWGDRTPFFICARGGSLNPQDGILNRYQEMRERVGFVYLRTSDNFPARLEIPV WVYEAGLLDWLVDLVRCEVVIGRGYPYVLETADQIAVIRNEDRNLFLRLMQDWAAREKLNLRLSRKTVSKLQRRRVR >Mature_397_residues MVFRADRILAVLQQKREAFATFDQRLSERREYYKQAMESLCQWSSLEIAEKIAPFPFPGALPTAEWDRYSNWRIPFEQEW ANYEESRDWAKSVIENIPTFAVDGSQIYPSKDLSIPVALVQIGWYENHHCATGLYEKDIQVDVLTPRDLGSDSSGEPKER MVNMRRFQMEIERLVEYIQKSQPGSRKLAFLDGALVATFAEVFEPESQDFYVQCLLQLLRASEQSRIPIVAYIDTTYTSD LVALLKHCFDLPEAPQLHDAQLLSPWLEWGDRTPFFICARGGSLNPQDGILNRYQEMRERVGFVYLRTSDNFPARLEIPV WVYEAGLLDWLVDLVRCEVVIGRGYPYVLETADQIAVIRNEDRNLFLRLMQDWAAREKLNLRLSRKTVSKLQRRRVR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46334; Mature: 46334
Theoretical pI: Translated: 5.13; Mature: 5.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVFRADRILAVLQQKREAFATFDQRLSERREYYKQAMESLCQWSSLEIAEKIAPFPFPGA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCC LPTAEWDRYSNWRIPFEQEWANYEESRDWAKSVIENIPTFAVDGSQIYPSKDLSIPVALV CCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCEEECCCEECCCCCCCCCEEEE QIGWYENHHCATGLYEKDIQVDVLTPRDLGSDSSGEPKERMVNMRRFQMEIERLVEYIQK EECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC SQPGSRKLAFLDGALVATFAEVFEPESQDFYVQCLLQLLRASEQSRIPIVAYIDTTYTSD CCCCCCEEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHH LVALLKHCFDLPEAPQLHDAQLLSPWLEWGDRTPFFICARGGSLNPQDGILNRYQEMRER HHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH VGFVYLRTSDNFPARLEIPVWVYEAGLLDWLVDLVRCEVVIGRGYPYVLETADQIAVIRN CCEEEEEECCCCCEEEECEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCEEEEEC EDRNLFLRLMQDWAAREKLNLRLSRKTVSKLQRRRVR CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MVFRADRILAVLQQKREAFATFDQRLSERREYYKQAMESLCQWSSLEIAEKIAPFPFPGA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCC LPTAEWDRYSNWRIPFEQEWANYEESRDWAKSVIENIPTFAVDGSQIYPSKDLSIPVALV CCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCEEECCCEECCCCCCCCCEEEE QIGWYENHHCATGLYEKDIQVDVLTPRDLGSDSSGEPKERMVNMRRFQMEIERLVEYIQK EECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC SQPGSRKLAFLDGALVATFAEVFEPESQDFYVQCLLQLLRASEQSRIPIVAYIDTTYTSD CCCCCCEEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHH LVALLKHCFDLPEAPQLHDAQLLSPWLEWGDRTPFFICARGGSLNPQDGILNRYQEMRER HHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH VGFVYLRTSDNFPARLEIPVWVYEAGLLDWLVDLVRCEVVIGRGYPYVLETADQIAVIRN CCEEEEEECCCCCEEEECEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCEEEEEC EDRNLFLRLMQDWAAREKLNLRLSRKTVSKLQRRRVR CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA