| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
Click here to switch to the map view.
The map label for this gene is pilG [H]
Identifier: 86609395
GI number: 86609395
Start: 2030529
End: 2031671
Strand: Reverse
Name: pilG [H]
Synonym: CYB_1939
Alternate gene names: 86609395
Gene position: 2031671-2030529 (Counterclockwise)
Preceding gene: 86609397
Following gene: 86609394
Centisome position: 66.68
GC content: 57.22
Gene sequence:
>1143_bases ATGCAAGGAAAACTACAAGAGATCGATATCCGCAGCATCCTTCAGCTCATCGAGCTGGGCCAGCGCACCGGTGAGCTTTT TGTAGAGGCCAGCCCCTCTGTCTACTGGTTTGTCTTCTTCCTGAATGGGCGGATTATCTACGCCTCTGAAACCGAAGGGA ACATTGCCCGCCTCAGAGACTATCTGCACCGCTTCAAGCTGGAAGCCGCCCTGGAGGAAATTCAAATTCCCCACAAAGCC GCGGTCAACGCCCCCGAATACAACCGCCTCTGGTCTTTGCTGGAAAGCCACAAGCTCAACCCCAACCAAGGCAAGCAAAT CCTGCTGGGCATGGTGCGGGAAGTCCTCTTCGACCTGCTTAGCCTCCACCACGGCTCCTTCATTTTTGAGGCCGGATCCC CCCTGGCCCCCCAGTTGACCACCTTCCCCGTTACCCCCCTGCTCACCGAGATCGTAGCCCAAGTGCAGGAGTGGAAAAAG CTGCACCCCTACATCCAAGCTCCCAACCAAGCTCCCACCATTGTCAACCCCCTGCCGCTCCAGCAAAACCTGCCCGCCCC CGTCTTCAAAGCCCTGAGCGAGTGGTCAGACGGCAAAACCAGCATTCGCCAGATGGGTCGCTACCTGGGTCGAGACACCC TCACAGTGGCCAAGGCCATCTATCCCTACGTCCGCCAAGGGGCCATTCAACTGTCCGAGCCCGTCTTGATCGCGGAGCCC AAGCCCAGCCGTCCCCTCAAACCCAGCGATAAGCCCAGCCACATCCTTTGCATCGACGACTCCATGGCCATCCAAAAAAC CGTAGAGTTCATCCTGCAAAACGAGGGCTACCAGGTCACCACCATCGGCAATCCTCTCAAAGCCTTGGGACAGGTGTTTC TCCTCAACCCAGATATGATCCTCTGTGATGTGGCCATGCCCAAATTGGATGGGTATGAGCTGTGCGCCATGTTGCGCAAA TCCAGCCAGTTTCGCGAAACCCCCATGATCATGCTGACCGGCAAGGATGGCTTCACCGATCGGATTAAGGCCCGCATGGC CGGAGCGAACGAATTTTTGAGCAAACCCTTTGCGGAAAAGGAGTTGTTGACCATTGTCGAATCCTACGTGGGCCCTCCCC CCAAACGGGGCGGTGGCGAATAG
Upstream 100 bases:
>100_bases TTTAACCCTCTTCCCGAAAATGGCCTTACCGGCGGGGCAGCAACAGTTAAAGACTAGCGTCATAATGGACGTATCTTGCT GGACTGCAGGCAGGGATCCC
Downstream 100 bases:
>100_bases GCGTTGGGGTAGCCAAAATGTTGGCACAGAAGACTGTGGGCGGGGTACTGGACAGAAGAGTGGCCTCACCGAAACAATAG GGGTAGCATGGCTGACTTGG
Product: response regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 380; Mature: 380
Protein sequence:
>380_residues MQGKLQEIDIRSILQLIELGQRTGELFVEASPSVYWFVFFLNGRIIYASETEGNIARLRDYLHRFKLEAALEEIQIPHKA AVNAPEYNRLWSLLESHKLNPNQGKQILLGMVREVLFDLLSLHHGSFIFEAGSPLAPQLTTFPVTPLLTEIVAQVQEWKK LHPYIQAPNQAPTIVNPLPLQQNLPAPVFKALSEWSDGKTSIRQMGRYLGRDTLTVAKAIYPYVRQGAIQLSEPVLIAEP KPSRPLKPSDKPSHILCIDDSMAIQKTVEFILQNEGYQVTTIGNPLKALGQVFLLNPDMILCDVAMPKLDGYELCAMLRK SSQFRETPMIMLTGKDGFTDRIKARMAGANEFLSKPFAEKELLTIVESYVGPPPKRGGGE
Sequences:
>Translated_380_residues MQGKLQEIDIRSILQLIELGQRTGELFVEASPSVYWFVFFLNGRIIYASETEGNIARLRDYLHRFKLEAALEEIQIPHKA AVNAPEYNRLWSLLESHKLNPNQGKQILLGMVREVLFDLLSLHHGSFIFEAGSPLAPQLTTFPVTPLLTEIVAQVQEWKK LHPYIQAPNQAPTIVNPLPLQQNLPAPVFKALSEWSDGKTSIRQMGRYLGRDTLTVAKAIYPYVRQGAIQLSEPVLIAEP KPSRPLKPSDKPSHILCIDDSMAIQKTVEFILQNEGYQVTTIGNPLKALGQVFLLNPDMILCDVAMPKLDGYELCAMLRK SSQFRETPMIMLTGKDGFTDRIKARMAGANEFLSKPFAEKELLTIVESYVGPPPKRGGGE >Mature_380_residues MQGKLQEIDIRSILQLIELGQRTGELFVEASPSVYWFVFFLNGRIIYASETEGNIARLRDYLHRFKLEAALEEIQIPHKA AVNAPEYNRLWSLLESHKLNPNQGKQILLGMVREVLFDLLSLHHGSFIFEAGSPLAPQLTTFPVTPLLTEIVAQVQEWKK LHPYIQAPNQAPTIVNPLPLQQNLPAPVFKALSEWSDGKTSIRQMGRYLGRDTLTVAKAIYPYVRQGAIQLSEPVLIAEP KPSRPLKPSDKPSHILCIDDSMAIQKTVEFILQNEGYQVTTIGNPLKALGQVFLLNPDMILCDVAMPKLDGYELCAMLRK SSQFRETPMIMLTGKDGFTDRIKARMAGANEFLSKPFAEKELLTIVESYVGPPPKRGGGE
Specific function: Is involved in pilus biosynthesis and twitching motility. May act as a single-domain response regulator whose function may be to receive a certain environmental signal(s) and then transduce that signal to the pilus assembly machinery via specific protein-
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1786599, Length=114, Percent_Identity=30.7017543859649, Blast_Score=72, Evalue=7e-14, Organism=Escherichia coli, GI87082012, Length=114, Percent_Identity=32.4561403508772, Blast_Score=68, Evalue=8e-13, Organism=Escherichia coli, GI1786911, Length=110, Percent_Identity=31.8181818181818, Blast_Score=65, Evalue=9e-12, Organism=Escherichia coli, GI1789809, Length=114, Percent_Identity=31.5789473684211, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1790860, Length=127, Percent_Identity=28.3464566929134, Blast_Score=62, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011006 - InterPro: IPR001789 [H]
Pfam domain/function: PF00072 Response_reg [H]
EC number: NA
Molecular weight: Translated: 42629; Mature: 42629
Theoretical pI: Translated: 7.63; Mature: 7.63
Prosite motif: PS50110 RESPONSE_REGULATORY
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQGKLQEIDIRSILQLIELGQRTGELFVEASPSVYWFVFFLNGRIIYASETEGNIARLRD CCCCCHHCCHHHHHHHHHHCCCCCCEEEEECCCEEEEEEEECCEEEEEECCCCCHHHHHH YLHRFKLEAALEEIQIPHKAAVNAPEYNRLWSLLESHKLNPNQGKQILLGMVREVLFDLL HHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH SLHHGSFIFEAGSPLAPQLTTFPVTPLLTEIVAQVQEWKKLHPYIQAPNQAPTIVNPLPL HHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCC QQNLPAPVFKALSEWSDGKTSIRQMGRYLGRDTLTVAKAIYPYVRQGAIQLSEPVLIAEP CCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEECCCEEEECC KPSRPLKPSDKPSHILCIDDSMAIQKTVEFILQNEGYQVTTIGNPLKALGQVFLLNPDMI CCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHHHCEEEEECCCEE LCDVAMPKLDGYELCAMLRKSSQFRETPMIMLTGKDGFTDRIKARMAGANEFLSKPFAEK EEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCHHHHHHCCCCHH ELLTIVESYVGPPPKRGGGE HHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MQGKLQEIDIRSILQLIELGQRTGELFVEASPSVYWFVFFLNGRIIYASETEGNIARLRD CCCCCHHCCHHHHHHHHHHCCCCCCEEEEECCCEEEEEEEECCEEEEEECCCCCHHHHHH YLHRFKLEAALEEIQIPHKAAVNAPEYNRLWSLLESHKLNPNQGKQILLGMVREVLFDLL HHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH SLHHGSFIFEAGSPLAPQLTTFPVTPLLTEIVAQVQEWKKLHPYIQAPNQAPTIVNPLPL HHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCC QQNLPAPVFKALSEWSDGKTSIRQMGRYLGRDTLTVAKAIYPYVRQGAIQLSEPVLIAEP CCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEECCCEEEECC KPSRPLKPSDKPSHILCIDDSMAIQKTVEFILQNEGYQVTTIGNPLKALGQVFLLNPDMI CCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHHHCEEEEECCCEE LCDVAMPKLDGYELCAMLRKSSQFRETPMIMLTGKDGFTDRIKARMAGANEFLSKPFAEK EEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCHHHHHHCCCCHH ELLTIVESYVGPPPKRGGGE HHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8104179; 10984043 [H]