| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86609236
Identifier: 86609236
GI number: 86609236
Start: 1863392
End: 1863958
Strand: Direct
Name: 86609236
Synonym: CYB_1778
Alternate gene names: NA
Gene position: 1863392-1863958 (Clockwise)
Preceding gene: 86609235
Following gene: 86609237
Centisome position: 61.16
GC content: 59.96
Gene sequence:
>567_bases ATGGTTCTGTTCACGATACACGTTCCAAAAGGGTGCAGAGTCGCCTTGGGCCTGGCTCTACTGCTCCTGGGATCCGGCTT GGGATGTACTGCTGCCACGGAGAGATCTCCCGCCTCACAAACTCAGGTAACCGAAGCCATCTCTCCATCCCCCCCAGCCA TAGGGCAGCCCCAGCAACTGCCGGTTGAAGCGGAAGTCACCCTTGCCGGCCAACGCTTTGAGCTAGAGGTGGCCCGCACC CCTGAGCAACAGCGCTTGGGCCTGATGTTTCGCACCGATTTGCCGCCGGATCGGGGCATGTGGTTTCCCTTTGATCCGCC CCAGCCAGCTTCTTTTTGGATGTTCAACACCCTGATCAACCTGGACATCATTTTCCTTCACCAAGGCAAGGTGGTGTACA TTGCCGCCGATGTGCCCGGCTGCCCCGCCCAACCCTGCCCCACCTATGGGCCGCCTCCTTCCCAGTTGGTGGACGGTGTG CTGGAGTTCCGCGGCGGGACGGCTGCTGCTTTGGGTTTGGCCGTTGGAGATCCGGTCGAGATCCGAGAGCATGACTCTAG TCAATAA
Upstream 100 bases:
>100_bases GGCAAGGCTCTCCCAGGGGGGAACTTCCTGCATCCGGTTGGCCAAGTCGCGGCAGCAGCGTCCGGCGCGATAGGATGAAG CCTGCACAGGAGAGTGCCAC
Downstream 100 bases:
>100_bases TAAGCTCAACTATACTGAAAATAATGTATAATATGTTCAGTACGGATTACTACCAGTTGATCTTTACTGTTTACTTTCGA GTCTGCCAACATGGTAGCCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 188; Mature: 188
Protein sequence:
>188_residues MVLFTIHVPKGCRVALGLALLLLGSGLGCTAATERSPASQTQVTEAISPSPPAIGQPQQLPVEAEVTLAGQRFELEVART PEQQRLGLMFRTDLPPDRGMWFPFDPPQPASFWMFNTLINLDIIFLHQGKVVYIAADVPGCPAQPCPTYGPPPSQLVDGV LEFRGGTAAALGLAVGDPVEIREHDSSQ
Sequences:
>Translated_188_residues MVLFTIHVPKGCRVALGLALLLLGSGLGCTAATERSPASQTQVTEAISPSPPAIGQPQQLPVEAEVTLAGQRFELEVART PEQQRLGLMFRTDLPPDRGMWFPFDPPQPASFWMFNTLINLDIIFLHQGKVVYIAADVPGCPAQPCPTYGPPPSQLVDGV LEFRGGTAAALGLAVGDPVEIREHDSSQ >Mature_188_residues MVLFTIHVPKGCRVALGLALLLLGSGLGCTAATERSPASQTQVTEAISPSPPAIGQPQQLPVEAEVTLAGQRFELEVART PEQQRLGLMFRTDLPPDRGMWFPFDPPQPASFWMFNTLINLDIIFLHQGKVVYIAADVPGCPAQPCPTYGPPPSQLVDGV LEFRGGTAAALGLAVGDPVEIREHDSSQ
Specific function: Unknown
COG id: COG1430
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20109; Mature: 20109
Theoretical pI: Translated: 4.57; Mature: 4.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVLFTIHVPKGCRVALGLALLLLGSGLGCTAATERSPASQTQVTEAISPSPPAIGQPQQL CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC PVEAEVTLAGQRFELEVARTPEQQRLGLMFRTDLPPDRGMWFPFDPPQPASFWMFNTLIN CEEEEEEECCCEEEEEEECCCCHHHCCEEEECCCCCCCCEECCCCCCCCCHHHHEEHEEC LDIIFLHQGKVVYIAADVPGCPAQPCPTYGPPPSQLVDGVLEFRGGTAAALGLAVGDPVE EEEEEEECCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCEE IREHDSSQ ECCCCCCC >Mature Secondary Structure MVLFTIHVPKGCRVALGLALLLLGSGLGCTAATERSPASQTQVTEAISPSPPAIGQPQQL CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC PVEAEVTLAGQRFELEVARTPEQQRLGLMFRTDLPPDRGMWFPFDPPQPASFWMFNTLIN CEEEEEEECCCEEEEEEECCCCHHHCCEEEECCCCCCCCEECCCCCCCCCHHHHEEHEEC LDIIFLHQGKVVYIAADVPGCPAQPCPTYGPPPSQLVDGVLEFRGGTAAALGLAVGDPVE EEEEEEECCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCEE IREHDSSQ ECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA