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The map label for this gene is ydcM [C]

Identifier: 86609217

GI number: 86609217

Start: 1842323

End: 1843549

Strand: Reverse

Name: ydcM [C]

Synonym: CYB_1759

Alternate gene names: 86609217

Gene position: 1843549-1842323 (Counterclockwise)

Preceding gene: 86609219

Following gene: 86609216

Centisome position: 60.51

GC content: 54.52

Gene sequence:

>1227_bases
ATGACCCAAGTCCTGACCGTCTCCTGCAAGCTCAAGGTGTCCCAGTCGCAAGCCGCAAAGTTGGATGCGACCTTGGATGC
CTTTGTGCAGGCGTTGAACTGGGTCAACCAAAACACACCAGAGAAGGTAGTTAACGCCGTTAAACTTCAATCTCTGTGCT
ACCGCCAAATCCGGGCCCGGTTCGGCTTGTCCAGTAACTTGGCTCAGCAGGTCTGCAGATGGCTGGCCGGTGCCCGTAAA
GTTGCCCGACAGAAAAACCGTCCGGTCAAAGCGTTCAAGAGAGGCTTTGCGACCTACGATGCCCGTATCTTTTCGTTTCG
CGAGAAAGACTGGACGGTGTCGCTGAACACCGTTGGGGGTCGAGAGCGCTTTGAGCTGGCGATTGGCCGTTACCAGAGAG
AACAGTTGGCAGGCTCCAATCCCAAATCGGCCACTCTGGTCAAGCGCAAAGACGGTTCCTACTCCATTCAAATCTGTGTG
GAAACGGAACCGTGCCCACTGCAAGGCACGGATAGAGTGCTGGGCGTGGATTTGGGAAGGACGGATATTGCTCATACATC
GGAAGGAGATAACTGGAATGGACAGCAGTTGAACAAAGTCCGAGACCATCACTCGCGGTTGAGGGCGGTACTCCAACGCA
AAGCCAGTAAGGGCACCCGCAGTTCGCGGCGCAGATGCAGAGAACTGTTGCAACGGCTGTCTGGCAAGGAAAGACGCTTT
CAGTCGCGTCAGCGTTGCGTAGCAAAAACGTGGGTCAATCATCGCATCTCCAAAGCTATTGTCTCTAGGGCAAAGGCGAC
AAACAGCGCTATTGCTCTGGAAGACTTGACAGGGATTCGGGAAAGGGTCAATCAACAGCCACGCAGCAAAGCCGAACGGC
GCAGGGCCAACAGTTGGGCGTTTTATCAACTCCGTCAATTTTTGGAGTACAAGGCTCTGCGTGCGGGGGTTGCTCTGATT
CTTGTTCCGCCTGCCTACACGTCGCAGACCTGCCACCGGTGTTTGCACATTCATCCCGACCCTGCGCAATCCTACCGCAG
TGGAAAGAAGTTTAAGTGTGGACACTGTGGATGGAAAGGGGATGCGGATTTGAATGGTGCGAATGTGATTGCGCTTTTGG
GGGCTGCTGTAAACCAGCCTAGAGGTTCGGGCTTGTTTTGTTCTCTGGTAGAGCATAACAGGCTCAGGGCTACTGAAAGC
CCGCGCTACACTGCTAAGGCGGTGTAG

Upstream 100 bases:

>100_bases
GTCTGCGATAGGATCAGAAAGTTCAGCTTACTAGCGCAGGAGCCCCGCCCTCTGTCCGTAGGACGAGGGTCGGGAGGAAT
GCGGAAGTTACGATAGAACC

Downstream 100 bases:

>100_bases
GGTCGGGTAGTTTACAAAGTGCCAAAATCCTAAGAGCCTCAGATCGAGTGCGACCGTGTTCCTCACCTTCTCAGCAGTAT
GGCTAGATCCTCAGCGTCGT

Product: ISSoc1, transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 407

Protein sequence:

>408_residues
MTQVLTVSCKLKVSQSQAAKLDATLDAFVQALNWVNQNTPEKVVNAVKLQSLCYRQIRARFGLSSNLAQQVCRWLAGARK
VARQKNRPVKAFKRGFATYDARIFSFREKDWTVSLNTVGGRERFELAIGRYQREQLAGSNPKSATLVKRKDGSYSIQICV
ETEPCPLQGTDRVLGVDLGRTDIAHTSEGDNWNGQQLNKVRDHHSRLRAVLQRKASKGTRSSRRRCRELLQRLSGKERRF
QSRQRCVAKTWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKAERRRANSWAFYQLRQFLEYKALRAGVALI
LVPPAYTSQTCHRCLHIHPDPAQSYRSGKKFKCGHCGWKGDADLNGANVIALLGAAVNQPRGSGLFCSLVEHNRLRATES
PRYTAKAV

Sequences:

>Translated_408_residues
MTQVLTVSCKLKVSQSQAAKLDATLDAFVQALNWVNQNTPEKVVNAVKLQSLCYRQIRARFGLSSNLAQQVCRWLAGARK
VARQKNRPVKAFKRGFATYDARIFSFREKDWTVSLNTVGGRERFELAIGRYQREQLAGSNPKSATLVKRKDGSYSIQICV
ETEPCPLQGTDRVLGVDLGRTDIAHTSEGDNWNGQQLNKVRDHHSRLRAVLQRKASKGTRSSRRRCRELLQRLSGKERRF
QSRQRCVAKTWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKAERRRANSWAFYQLRQFLEYKALRAGVALI
LVPPAYTSQTCHRCLHIHPDPAQSYRSGKKFKCGHCGWKGDADLNGANVIALLGAAVNQPRGSGLFCSLVEHNRLRATES
PRYTAKAV
>Mature_407_residues
TQVLTVSCKLKVSQSQAAKLDATLDAFVQALNWVNQNTPEKVVNAVKLQSLCYRQIRARFGLSSNLAQQVCRWLAGARKV
ARQKNRPVKAFKRGFATYDARIFSFREKDWTVSLNTVGGRERFELAIGRYQREQLAGSNPKSATLVKRKDGSYSIQICVE
TEPCPLQGTDRVLGVDLGRTDIAHTSEGDNWNGQQLNKVRDHHSRLRAVLQRKASKGTRSSRRRCRELLQRLSGKERRFQ
SRQRCVAKTWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKAERRRANSWAFYQLRQFLEYKALRAGVALIL
VPPAYTSQTCHRCLHIHPDPAQSYRSGKKFKCGHCGWKGDADLNGANVIALLGAAVNQPRGSGLFCSLVEHNRLRATESP
RYTAKAV

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=239, Percent_Identity=28.0334728033473, Blast_Score=75, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 46010; Mature: 45879

Theoretical pI: Translated: 11.26; Mature: 11.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
0.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQVLTVSCKLKVSQSQAAKLDATLDAFVQALNWVNQNTPEKVVNAVKLQSLCYRQIRAR
CCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRWLAGARKVARQKNRPVKAFKRGFATYDARIFSFREKDWTVSLNTVGG
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEEECCCEEEEEECCCC
RERFELAIGRYQREQLAGSNPKSATLVKRKDGSYSIQICVETEPCPLQGTDRVLGVDLGR
CHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCEEEEECCC
TDIAHTSEGDNWNGQQLNKVRDHHSRLRAVLQRKASKGTRSSRRRCRELLQRLSGKERRF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHH
QSRQRCVAKTWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKAERRRANSWA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCHHHHHHHHHCCCHH
FYQLRQFLEYKALRAGVALILVPPAYTSQTCHRCLHIHPDPAQSYRSGKKFKCGHCGWKG
HHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHEECCCCHHHHHCCCCCEECCCCCCCC
DADLNGANVIALLGAAVNQPRGSGLFCSLVEHNRLRATESPRYTAKAV
CCCCCCCHHHHHHHHHHCCCCCCCEEEEEHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TQVLTVSCKLKVSQSQAAKLDATLDAFVQALNWVNQNTPEKVVNAVKLQSLCYRQIRAR
CCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRWLAGARKVARQKNRPVKAFKRGFATYDARIFSFREKDWTVSLNTVGG
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEEECCCEEEEEECCCC
RERFELAIGRYQREQLAGSNPKSATLVKRKDGSYSIQICVETEPCPLQGTDRVLGVDLGR
CHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCEEEEECCC
TDIAHTSEGDNWNGQQLNKVRDHHSRLRAVLQRKASKGTRSSRRRCRELLQRLSGKERRF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHH
QSRQRCVAKTWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKAERRRANSWA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCHHHHHHHHHCCCHH
FYQLRQFLEYKALRAGVALILVPPAYTSQTCHRCLHIHPDPAQSYRSGKKFKCGHCGWKG
HHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHEECCCCHHHHHCCCCCEECCCCCCCC
DADLNGANVIALLGAAVNQPRGSGLFCSLVEHNRLRATESPRYTAKAV
CCCCCCCHHHHHHHHHHCCCCCCCEEEEEHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]