| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
Click here to switch to the map view.
The map label for this gene is 86609212
Identifier: 86609212
GI number: 86609212
Start: 1837181
End: 1839013
Strand: Direct
Name: 86609212
Synonym: CYB_1754
Alternate gene names: NA
Gene position: 1837181-1839013 (Clockwise)
Preceding gene: 86609211
Following gene: 86609218
Centisome position: 60.3
GC content: 63.56
Gene sequence:
>1833_bases ATGGGGTTTGCCGCCCTCTCCCAGCCAGAGGTGGGATCCCCTGTTGCCGTCTCCGAGCCGGAGGTGCCCCGTTTTACCGC CCACGGTTGGCCCTTGTTGGATCCCTTGCCGCAGCCGGACGAGATTTGGGAGTGCGAGCTGGTGGTGGTGGGCGGATCCC TGGGAGGGGTGGCAGCGGCAGGCCATGCCATGCGAGGGGGGGTGCAGACCTGTCTCATCGAGCTCACCCCTTGGCTGGGG GGGCAGATCACCTCCCAGGGGGTATCGGCCATTGATGAATCGCTGCCAATGCGGCAACGGGGCAATTTTTCCCGCCACTG GCTGGAGTTCAAGGCCTTGATCGAAAGCCAGCCGGTGCATCTGCCGGCCTGGACAGGGATCCCGCCGGGAACCCGCGTAT CCGAGATCAACAGCTGCTGGGTGGGAGGGCTGTGTTTTCCGCCTCAGGCGGGGCTGCAGGCGGTGGAAACCTGGCTGCAA CAGGCAGCTCAAAATGCCCCCAACAGCCGCTGGGCTACCCAAACGGCTTTTAAGGGGGCCACCTTCAGCGCCGATGGATC CCAGATTGAAAGCATTTACGCTGTGCAGCGGCAACCCCGGGATCCCAACTTTGTGCCGCCGGGACGGCTGTGGCGGGAGC TGGTGAGCTGGTACAGTTGGCAGGAAACGGAGGTGTTCGCCAAGCGAGTGCTGCGTCTACAAGCGCCGCCGGGCCGCCCA TTCTTCGTGATCGATGCCACCGATACCGGAGAGCTGGTGGGCTGGGCCGGGATCCCCTATCGGCTGGGTTCGGAAGGGCA CGATGTGACCGGCGAGCCCAATGCCGCCCCCGCCAGCAACCCGGAGTGCACTCAAGCCTTTACCTTTCCCTTCGTGCTGG CCATCCACGACGATGGCGGTCGCTCCCGCGCCGAGCTGGCCCAACTGCAACCAGGCTATTCCCGCGCCGAACACCGCCGC GAGTTCGACATGGAAGGTTTCCCCACCTTCAGCGGCCAGAGCTTTTTCAATTACCGCCGCATCGTCAGCAAGGGTCGCCG GGATCCCTTCTACAGCACGCCTGTTCCAGGCGACCTGACGCTGGTGAACTGGAACCGCGGCAACGACTGGGGGATCATGA ACCCGCCCCTGATCCTGACGGAAGAGCGGCTGGTGGCCTCGGGGCAGCGCCACAACTGGCTGGGGGGCCTGGATGTCTCG GCCATCAAAGATGGAGAAAACCACGCCCTGCTGTTTGCCGAGTGGCTGATGGAAACCCAATCCCGCAGCGGCTATCCCCT GTCCTTGGTGTTTGCCGAAGAGTCCTTGCTGGGCACCCGCTCCGGCCTTAGCCTCTACCCCTACATCCGCGAAGGTCGGC GCATCCTGGGGCGAGCTGCCTACGGCCAAGCAGAGTTCCTGATGTTGGAGCAGGATATTCGCGTCGGCACCGCCGGGGGG CGGGACTTCAGACCTACCGTGGTGGGGGTTACCCACTACGCCATCGATATCCACGGCTGTCGCTACCGCAACTGGGAGCC CTCTCTTTCGGCCAGCTCCGCGCCAGTCAACGAGTTTTCCGTCCGTCCCATTCTCATTCCCTTGGAAGCCCTGATCCCGC AGAAGGTGGATAACCTGCTCATCGGCGGCAAAGGGATCGCCGTCAGCCACATTGTCAACGCCGCCACCCGCGTGCATTAC GGTGAATGGACCATCGGCTCGGCGGTAGGGCTGACCGTGGCTTGGCTGCACAGCCAGGATCCCAGCTTGACCCCAGCTCA GATCGTGCCGCAAGGCAAAATGGCCGATTTACAACGCTACCTGATCTCCCATGGGCAAAGACTGCAATGGTGA
Upstream 100 bases:
>100_bases GAGCATGGCTGGCAAAAAGACGGCTGCGGCGTGCCGGGGATCTGAGCCCAAGCGAACTGTGGGGCTGGGGATCCTGTCGC TGCTGAGCTTTGTGGCCGGG
Downstream 100 bases:
>100_bases ACCCAGAGGACACCGTCTCAGCGCGAACGACAGATCCCCACCCAATCGACCCAATTTTTCCGATATCGGGGCCCTAGGTT GTGTTGATCTTTCATTTGAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 610; Mature: 609
Protein sequence:
>610_residues MGFAALSQPEVGSPVAVSEPEVPRFTAHGWPLLDPLPQPDEIWECELVVVGGSLGGVAAAGHAMRGGVQTCLIELTPWLG GQITSQGVSAIDESLPMRQRGNFSRHWLEFKALIESQPVHLPAWTGIPPGTRVSEINSCWVGGLCFPPQAGLQAVETWLQ QAAQNAPNSRWATQTAFKGATFSADGSQIESIYAVQRQPRDPNFVPPGRLWRELVSWYSWQETEVFAKRVLRLQAPPGRP FFVIDATDTGELVGWAGIPYRLGSEGHDVTGEPNAAPASNPECTQAFTFPFVLAIHDDGGRSRAELAQLQPGYSRAEHRR EFDMEGFPTFSGQSFFNYRRIVSKGRRDPFYSTPVPGDLTLVNWNRGNDWGIMNPPLILTEERLVASGQRHNWLGGLDVS AIKDGENHALLFAEWLMETQSRSGYPLSLVFAEESLLGTRSGLSLYPYIREGRRILGRAAYGQAEFLMLEQDIRVGTAGG RDFRPTVVGVTHYAIDIHGCRYRNWEPSLSASSAPVNEFSVRPILIPLEALIPQKVDNLLIGGKGIAVSHIVNAATRVHY GEWTIGSAVGLTVAWLHSQDPSLTPAQIVPQGKMADLQRYLISHGQRLQW
Sequences:
>Translated_610_residues MGFAALSQPEVGSPVAVSEPEVPRFTAHGWPLLDPLPQPDEIWECELVVVGGSLGGVAAAGHAMRGGVQTCLIELTPWLG GQITSQGVSAIDESLPMRQRGNFSRHWLEFKALIESQPVHLPAWTGIPPGTRVSEINSCWVGGLCFPPQAGLQAVETWLQ QAAQNAPNSRWATQTAFKGATFSADGSQIESIYAVQRQPRDPNFVPPGRLWRELVSWYSWQETEVFAKRVLRLQAPPGRP FFVIDATDTGELVGWAGIPYRLGSEGHDVTGEPNAAPASNPECTQAFTFPFVLAIHDDGGRSRAELAQLQPGYSRAEHRR EFDMEGFPTFSGQSFFNYRRIVSKGRRDPFYSTPVPGDLTLVNWNRGNDWGIMNPPLILTEERLVASGQRHNWLGGLDVS AIKDGENHALLFAEWLMETQSRSGYPLSLVFAEESLLGTRSGLSLYPYIREGRRILGRAAYGQAEFLMLEQDIRVGTAGG RDFRPTVVGVTHYAIDIHGCRYRNWEPSLSASSAPVNEFSVRPILIPLEALIPQKVDNLLIGGKGIAVSHIVNAATRVHY GEWTIGSAVGLTVAWLHSQDPSLTPAQIVPQGKMADLQRYLISHGQRLQW >Mature_609_residues GFAALSQPEVGSPVAVSEPEVPRFTAHGWPLLDPLPQPDEIWECELVVVGGSLGGVAAAGHAMRGGVQTCLIELTPWLGG QITSQGVSAIDESLPMRQRGNFSRHWLEFKALIESQPVHLPAWTGIPPGTRVSEINSCWVGGLCFPPQAGLQAVETWLQQ AAQNAPNSRWATQTAFKGATFSADGSQIESIYAVQRQPRDPNFVPPGRLWRELVSWYSWQETEVFAKRVLRLQAPPGRPF FVIDATDTGELVGWAGIPYRLGSEGHDVTGEPNAAPASNPECTQAFTFPFVLAIHDDGGRSRAELAQLQPGYSRAEHRRE FDMEGFPTFSGQSFFNYRRIVSKGRRDPFYSTPVPGDLTLVNWNRGNDWGIMNPPLILTEERLVASGQRHNWLGGLDVSA IKDGENHALLFAEWLMETQSRSGYPLSLVFAEESLLGTRSGLSLYPYIREGRRILGRAAYGQAEFLMLEQDIRVGTAGGR DFRPTVVGVTHYAIDIHGCRYRNWEPSLSASSAPVNEFSVRPILIPLEALIPQKVDNLLIGGKGIAVSHIVNAATRVHYG EWTIGSAVGLTVAWLHSQDPSLTPAQIVPQGKMADLQRYLISHGQRLQW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 67122; Mature: 66990
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGFAALSQPEVGSPVAVSEPEVPRFTAHGWPLLDPLPQPDEIWECELVVVGGSLGGVAAA CCCCCCCCCCCCCCEECCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHH GHAMRGGVQTCLIELTPWLGGQITSQGVSAIDESLPMRQRGNFSRHWLEFKALIESQPVH CHHHHCCHHEEEEEECCCCCCEEHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHCCCCCC LPAWTGIPPGTRVSEINSCWVGGLCFPPQAGLQAVETWLQQAAQNAPNSRWATQTAFKGA CCCCCCCCCCCCHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCC TFSADGSQIESIYAVQRQPRDPNFVPPGRLWRELVSWYSWQETEVFAKRVLRLQAPPGRP EECCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHEEECCCCCE FFVIDATDTGELVGWAGIPYRLGSEGHDVTGEPNAAPASNPECTQAFTFPFVLAIHDDGG EEEEECCCCCCEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEECEEEEEEECCCC RSRAELAQLQPGYSRAEHRREFDMEGFPTFSGQSFFNYRRIVSKGRRDPFYSTPVPGDLT CCHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEE LVNWNRGNDWGIMNPPLILTEERLVASGQRHNWLGGLDVSAIKDGENHALLFAEWLMETQ EEECCCCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCCCEEEECCCCCEEEHHHHHHHHH SRSGYPLSLVFAEESLLGTRSGLSLYPYIREGRRILGRAAYGQAEFLMLEQDIRVGTAGG CCCCCCEEEEEECCHHHCCCCCCEECHHHHHHHHHHHHHCCCCEEEEEEECCCEEECCCC RDFRPTVVGVTHYAIDIHGCRYRNWEPSLSASSAPVNEFSVRPILIPLEALIPQKVDNLL CCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHEE IGGKGIAVSHIVNAATRVHYGEWTIGSAVGLTVAWLHSQDPSLTPAQIVPQGKMADLQRY ECCCCHHHHHHHHHHHHEECCCEECCCHHCEEEEEEECCCCCCCHHHCCCCCCHHHHHHH LISHGQRLQW HHHCCCCCCC >Mature Secondary Structure GFAALSQPEVGSPVAVSEPEVPRFTAHGWPLLDPLPQPDEIWECELVVVGGSLGGVAAA CCCCCCCCCCCCCEECCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHH GHAMRGGVQTCLIELTPWLGGQITSQGVSAIDESLPMRQRGNFSRHWLEFKALIESQPVH CHHHHCCHHEEEEEECCCCCCEEHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHCCCCCC LPAWTGIPPGTRVSEINSCWVGGLCFPPQAGLQAVETWLQQAAQNAPNSRWATQTAFKGA CCCCCCCCCCCCHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCC TFSADGSQIESIYAVQRQPRDPNFVPPGRLWRELVSWYSWQETEVFAKRVLRLQAPPGRP EECCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHEEECCCCCE FFVIDATDTGELVGWAGIPYRLGSEGHDVTGEPNAAPASNPECTQAFTFPFVLAIHDDGG EEEEECCCCCCEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEECEEEEEEECCCC RSRAELAQLQPGYSRAEHRREFDMEGFPTFSGQSFFNYRRIVSKGRRDPFYSTPVPGDLT CCHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEE LVNWNRGNDWGIMNPPLILTEERLVASGQRHNWLGGLDVSAIKDGENHALLFAEWLMETQ EEECCCCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCCCEEEECCCCCEEEHHHHHHHHH SRSGYPLSLVFAEESLLGTRSGLSLYPYIREGRRILGRAAYGQAEFLMLEQDIRVGTAGG CCCCCCEEEEEECCHHHCCCCCCEECHHHHHHHHHHHHHCCCCEEEEEEECCCEEECCCC RDFRPTVVGVTHYAIDIHGCRYRNWEPSLSASSAPVNEFSVRPILIPLEALIPQKVDNLL CCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHEE IGGKGIAVSHIVNAATRVHYGEWTIGSAVGLTVAWLHSQDPSLTPAQIVPQGKMADLQRY ECCCCHHHHHHHHHHHHEECCCEECCCHHCEEEEEEECCCCCCCHHHCCCCCCHHHHHHH LISHGQRLQW HHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA