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The map label for this gene is yggS [C]

Identifier: 86609204

GI number: 86609204

Start: 1829257

End: 1829940

Strand: Direct

Name: yggS [C]

Synonym: CYB_1746

Alternate gene names: 86609204

Gene position: 1829257-1829940 (Clockwise)

Preceding gene: 86609203

Following gene: 86609205

Centisome position: 60.04

GC content: 57.75

Gene sequence:

>684_bases
ATGCCCCTTGACGAGCAGCTCATCCACAGCCGCATTCAGGCCATCCGAGCCCAGATCCCAGACCATGTGGAGATCATGGC
AGTGAGCAAAGGCTACAGTGCCGACCACATCCGCGCCGCCTATCGGGCTGGGATCCGCCACTTTGGGGAGAGTCGAGTGC
AAGAAGCCGCCGTCAAACAAGGGCAACTGCAGGATCTGACCGGCATTGTTTGGCACTTAATTGGGCATCTGCAGACCAAC
AAAGTCAAACCGGCCCTCAAGCAATTTGCCTGGATCGACAGCGTCGATAGCTTGCGCCTGGCCAAGCTGATCAACCAAAA
AGCCTGGGAGCTGCACCTCACCCCCAAGCTTTGCCTGCAGGTTAAATTGGCTCCGGATCCCAATAAGTTCGGCTGGCTCA
TCCCCGATCTGTTGCAGAGCCTCCCCGAACTGAACCAACTGCTGCAGGTGCAAATTGTGGGCCTGATGACCATTTTGCCT
TTGGGCTTGAGCTCAGAGGCGGCCCTAGACCTGTTTCGCAAGCTGGCCGAACTGGCCGATTACATCCAGCGCAGCGGCTA
TGAACATCTGCAGGTGCACACCCTCTCCATGGGCATGTCCGACGATTACCTCCTGGCGGTGGCAGCAGGCTCTAACTTGA
TCCGACTGGGGCGTGCTTTGTTTGCCGACGCCGAGCAGGAATAG

Upstream 100 bases:

>100_bases
ACAGCCCGTTGGCTCTGGGTTCTGCAAAAATCTATCCTAGAGCATTGTTGCCAATTGGAACGAGAATGGGGATAGAGATC
CCCGGCCTGCTGACCTGACG

Downstream 100 bases:

>100_bases
ATGTGACCTCTGTGAAGCCGTTAAATTGTGATTAAATTTTGTGTAAAGCCGTGCAACTCCCCAGTCGCCCTGCGGGGCAC
CTTTGGGGCGAGAGTTCGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 226

Protein sequence:

>227_residues
MPLDEQLIHSRIQAIRAQIPDHVEIMAVSKGYSADHIRAAYRAGIRHFGESRVQEAAVKQGQLQDLTGIVWHLIGHLQTN
KVKPALKQFAWIDSVDSLRLAKLINQKAWELHLTPKLCLQVKLAPDPNKFGWLIPDLLQSLPELNQLLQVQIVGLMTILP
LGLSSEAALDLFRKLAELADYIQRSGYEHLQVHTLSMGMSDDYLLAVAAGSNLIRLGRALFADAEQE

Sequences:

>Translated_227_residues
MPLDEQLIHSRIQAIRAQIPDHVEIMAVSKGYSADHIRAAYRAGIRHFGESRVQEAAVKQGQLQDLTGIVWHLIGHLQTN
KVKPALKQFAWIDSVDSLRLAKLINQKAWELHLTPKLCLQVKLAPDPNKFGWLIPDLLQSLPELNQLLQVQIVGLMTILP
LGLSSEAALDLFRKLAELADYIQRSGYEHLQVHTLSMGMSDDYLLAVAAGSNLIRLGRALFADAEQE
>Mature_226_residues
PLDEQLIHSRIQAIRAQIPDHVEIMAVSKGYSADHIRAAYRAGIRHFGESRVQEAAVKQGQLQDLTGIVWHLIGHLQTNK
VKPALKQFAWIDSVDSLRLAKLINQKAWELHLTPKLCLQVKLAPDPNKFGWLIPDLLQSLPELNQLLQVQIVGLMTILPL
GLSSEAALDLFRKLAELADYIQRSGYEHLQVHTLSMGMSDDYLLAVAAGSNLIRLGRALFADAEQE

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=232, Percent_Identity=31.0344827586207, Blast_Score=85, Evalue=5e-17,
Organism=Escherichia coli, GI1789321, Length=208, Percent_Identity=35.0961538461538, Blast_Score=107, Evalue=8e-25,
Organism=Caenorhabditis elegans, GI17533025, Length=224, Percent_Identity=33.0357142857143, Blast_Score=89, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6319435, Length=210, Percent_Identity=30.952380952381, Blast_Score=80, Evalue=2e-16,
Organism=Drosophila melanogaster, GI45550861, Length=235, Percent_Identity=29.7872340425532, Blast_Score=77, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25376; Mature: 25245

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLDEQLIHSRIQAIRAQIPDHVEIMAVSKGYSADHIRAAYRAGIRHFGESRVQEAAVKQ
CCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
GQLQDLTGIVWHLIGHLQTNKVKPALKQFAWIDSVDSLRLAKLINQKAWELHLTPKLCLQ
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEECCHHHEEE
VKLAPDPNKFGWLIPDLLQSLPELNQLLQVQIVGLMTILPLGLSSEAALDLFRKLAELAD
EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
YIQRSGYEHLQVHTLSMGMSDDYLLAVAAGSNLIRLGRALFADAEQE
HHHHCCCCCEEEEEEECCCCCCEEEEEECCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
PLDEQLIHSRIQAIRAQIPDHVEIMAVSKGYSADHIRAAYRAGIRHFGESRVQEAAVKQ
CCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
GQLQDLTGIVWHLIGHLQTNKVKPALKQFAWIDSVDSLRLAKLINQKAWELHLTPKLCLQ
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEECCHHHEEE
VKLAPDPNKFGWLIPDLLQSLPELNQLLQVQIVGLMTILPLGLSSEAALDLFRKLAELAD
EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
YIQRSGYEHLQVHTLSMGMSDDYLLAVAAGSNLIRLGRALFADAEQE
HHHHCCCCCEEEEEEECCCCCCEEEEEECCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]