| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86609189
Identifier: 86609189
GI number: 86609189
Start: 1813907
End: 1814779
Strand: Direct
Name: 86609189
Synonym: CYB_1731
Alternate gene names: NA
Gene position: 1813907-1814779 (Clockwise)
Preceding gene: 86609188
Following gene: 86609190
Centisome position: 59.54
GC content: 60.14
Gene sequence:
>873_bases ATGAGCAGGCTGGGCAAACTGCTGGGGGTGATTTGTTGGGTGTGGGGATCCGCTCTGCCCGTTTGGGCGCAGGATCCCTT CCGCAGCGGGGACAATGCCCGCCCCATCAGGCCGGAGGTGGCGGCAGCTTTTGAAGAGTTCTTCTGTGCAGGCCGCTACA GCCAGAGCCGGGAAAAACTGGAAATGGCCAAGAAGGCCTCCCCCGAAGAGCCGATGGTCTATGCCCTGTTGGCGGCGCTG GCTTATCAGGAGGGAGACCTGGAAGCATTTGCCCAGTTGGCCACTCAAACCCGACAGGTGGCCGCCGAGTTGAAAAAGAC GGATCCCTTGCGTGGCAACCTTTATGAGGGCGTGGGCTACGGGCTAGAGGCAGCCAACATTGTGGTGCGAGATGGGGTGG TCATCGGTTTGCCCAAGGCTCTGCCCACCCTCAATCAATTGTTTGCCTCCATCCGGGCCGCCCAAGCAGTGGACAGCAGC GATCCGGAGCTCAATCTGCTCAACGGCTACATGGATTTGCTGCTGACCTACCGGGAGAAGGCTCTGAATCAGTTTCGGAT GGCAGCGCCTGACTATCTGTCCTACCGCGGCCAAGCTCTGGCCTACCGGGATATGCAGCGCTTTGACGAGGCATTGGAGG CGGTAGATCGGGCCATTGCTGCTTCCTGCAACAACCCGGAGCTCTATTACCTCAAGGCGCAAATTTTGGTTTCCAAAGGG CAAGACCGAGAGGCCGTCCCCCTTTTCGATCAAGCCCTGCAAGCTTCCGCCCAACTGCCCCAACCTTTGGTGGAGCAAAT CCAGATGGAGCGGGATCGCGCCGCCCAGCGCAGTGGGTTGACCGGCCAGTTGCCGGCTGCACCTAACCCCTGA
Upstream 100 bases:
>100_bases GGTTCAAGATGCCGCTATTGCTTCGATTGCCCAACTGCTGCGCTGAAGAGAGGGTTAGATGGGGGTGGGAGTTGAGGCAC TGGGGATGAGTATCGGCAAA
Downstream 100 bases:
>100_bases AGGGATCCCATGAGCCTGCGCATCAGCGGCAAACGAGCGCTGCAAACTCCCGCTGGCTTGGGCACTCGACCCACCCCTGG CCGGGTGAGGCAGGCCTTGT
Product: TPR domain-containing protein
Products: NA
Alternate protein names: Tetratricopeptide Repeat Domain Protein; Tetratricopeptide Domain-Containing Protein; Tetratricopeptide Domain Protein
Number of amino acids: Translated: 290; Mature: 289
Protein sequence:
>290_residues MSRLGKLLGVICWVWGSALPVWAQDPFRSGDNARPIRPEVAAAFEEFFCAGRYSQSREKLEMAKKASPEEPMVYALLAAL AYQEGDLEAFAQLATQTRQVAAELKKTDPLRGNLYEGVGYGLEAANIVVRDGVVIGLPKALPTLNQLFASIRAAQAVDSS DPELNLLNGYMDLLLTYREKALNQFRMAAPDYLSYRGQALAYRDMQRFDEALEAVDRAIAASCNNPELYYLKAQILVSKG QDREAVPLFDQALQASAQLPQPLVEQIQMERDRAAQRSGLTGQLPAAPNP
Sequences:
>Translated_290_residues MSRLGKLLGVICWVWGSALPVWAQDPFRSGDNARPIRPEVAAAFEEFFCAGRYSQSREKLEMAKKASPEEPMVYALLAAL AYQEGDLEAFAQLATQTRQVAAELKKTDPLRGNLYEGVGYGLEAANIVVRDGVVIGLPKALPTLNQLFASIRAAQAVDSS DPELNLLNGYMDLLLTYREKALNQFRMAAPDYLSYRGQALAYRDMQRFDEALEAVDRAIAASCNNPELYYLKAQILVSKG QDREAVPLFDQALQASAQLPQPLVEQIQMERDRAAQRSGLTGQLPAAPNP >Mature_289_residues SRLGKLLGVICWVWGSALPVWAQDPFRSGDNARPIRPEVAAAFEEFFCAGRYSQSREKLEMAKKASPEEPMVYALLAALA YQEGDLEAFAQLATQTRQVAAELKKTDPLRGNLYEGVGYGLEAANIVVRDGVVIGLPKALPTLNQLFASIRAAQAVDSSD PELNLLNGYMDLLLTYREKALNQFRMAAPDYLSYRGQALAYRDMQRFDEALEAVDRAIAASCNNPELYYLKAQILVSKGQ DREAVPLFDQALQASAQLPQPLVEQIQMERDRAAQRSGLTGQLPAAPNP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31983; Mature: 31852
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRLGKLLGVICWVWGSALPVWAQDPFRSGDNARPIRPEVAAAFEEFFCAGRYSQSREKL CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH EMAKKASPEEPMVYALLAALAYQEGDLEAFAQLATQTRQVAAELKKTDPLRGNLYEGVGY HHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCC GLEAANIVVRDGVVIGLPKALPTLNQLFASIRAAQAVDSSDPELNLLNGYMDLLLTYREK CCHHHHEEEECCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH ALNQFRMAAPDYLSYRGQALAYRDMQRFDEALEAVDRAIAASCNNPELYYLKAQILVSKG HHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEHHEECC QDREAVPLFDQALQASAQLPQPLVEQIQMERDRAAQRSGLTGQLPAAPNP CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure SRLGKLLGVICWVWGSALPVWAQDPFRSGDNARPIRPEVAAAFEEFFCAGRYSQSREKL CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH EMAKKASPEEPMVYALLAALAYQEGDLEAFAQLATQTRQVAAELKKTDPLRGNLYEGVGY HHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCC GLEAANIVVRDGVVIGLPKALPTLNQLFASIRAAQAVDSSDPELNLLNGYMDLLLTYREK CCHHHHEEEECCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH ALNQFRMAAPDYLSYRGQALAYRDMQRFDEALEAVDRAIAASCNNPELYYLKAQILVSKG HHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEHHEECC QDREAVPLFDQALQASAQLPQPLVEQIQMERDRAAQRSGLTGQLPAAPNP CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA