Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

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The map label for this gene is 86609188

Identifier: 86609188

GI number: 86609188

Start: 1812917

End: 1813852

Strand: Direct

Name: 86609188

Synonym: CYB_1730

Alternate gene names: NA

Gene position: 1812917-1813852 (Clockwise)

Preceding gene: 86609185

Following gene: 86609189

Centisome position: 59.5

GC content: 57.91

Gene sequence:

>936_bases
TTGTTATCCTGTCGCATAAGCTCCCCCTCTGGGATCCCAGGGGAAAGTGGGCCAACCTTGCCTGACACTGAACGCCAGCA
CAGCCCGCATAATGTTCCCGCACAATGTCCTGCACAATGTTGTGTCAGCAAGACTTGGTTCTCGATGGCAGGTTTGCAGA
GAGGACGTGACCTGATGTTTACTTGGCTCTGGACGAAACAATTCTCTCGCTTGAATCAAAGGCTACAGAGCCTGGAGGTA
GCCCGCGAGGAAAACCTTCTGTCTCCCGATCTGAGCGCCCAAACTCTGCAGGTGGCCCCCGACTTTTGGGAACGGCAGCA
CCAAGCCTTTGTCTATGTGGACAAGCAAATGCAAAGGCTCAGCCGTCGCAGCAAGATTTGGGGAGGAATGGCGCTGTTGG
CCATTCTGGCCGATGCGGCTTTGATAGTGGCAGGTCTGACGGCGTTTCAGTCTTGGCAGCAGGTGCAGGCGGATCGCCAA
TTAACTCGCATTGCCCAGCAGACTGCGGCTGCCGATCCTGTGCAGCGAGCTTTTGAGGATCTGGTGGCCCAATTGCCCCA
GATGAGCGGGGCAGAGCGATATCGTGCCCTAGAGGCGTTGCAGGCTCTCTCGGCTATCTCGATGGCGCACGGCGGCTATT
CCTACGACGGTTCTGCGGGTATTTCTGTGTACAGCTCTGCTCTCCCAGCAACCCCTCTTGAGGCTCAACTGCAAACCATT
TACCGGTTGGGGCAAATGCGGGTGGTGGAGGCGGTGCCGGCTTTGCTGACCAAGCTTGCGGACGATGAACCGGTGGTGCG
GGAGGCGGCAGCCCGTGCCCTCGGCCAAATTGGGGATCCGCGCGCCTTGGGTCCCTTGCACGATCTTCTGGCCTATGAGC
CCAATGAGTTGGTTCAAGATGCCGCTATTGCTTCGATTGCCCAACTGCTGCGCTGA

Upstream 100 bases:

>100_bases
GCAAGTGCAGCCAACCTCTCTGCGTCCTTCGTCGGCCTCTCTACACTGAGAAGCATCCTGCGATTCTAGGGTAAAGACCG
GTGGTGGGGAGCTGACGCTT

Downstream 100 bases:

>100_bases
AGAGAGGGTTAGATGGGGGTGGGAGTTGAGGCACTGGGGATGAGTATCGGCAAAATGAGCAGGCTGGGCAAACTGCTGGG
GGTGATTTGTTGGGTGTGGG

Product: HEAT repeat-containing PBS lyase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MLSCRISSPSGIPGESGPTLPDTERQHSPHNVPAQCPAQCCVSKTWFSMAGLQRGRDLMFTWLWTKQFSRLNQRLQSLEV
AREENLLSPDLSAQTLQVAPDFWERQHQAFVYVDKQMQRLSRRSKIWGGMALLAILADAALIVAGLTAFQSWQQVQADRQ
LTRIAQQTAAADPVQRAFEDLVAQLPQMSGAERYRALEALQALSAISMAHGGYSYDGSAGISVYSSALPATPLEAQLQTI
YRLGQMRVVEAVPALLTKLADDEPVVREAAARALGQIGDPRALGPLHDLLAYEPNELVQDAAIASIAQLLR

Sequences:

>Translated_311_residues
MLSCRISSPSGIPGESGPTLPDTERQHSPHNVPAQCPAQCCVSKTWFSMAGLQRGRDLMFTWLWTKQFSRLNQRLQSLEV
AREENLLSPDLSAQTLQVAPDFWERQHQAFVYVDKQMQRLSRRSKIWGGMALLAILADAALIVAGLTAFQSWQQVQADRQ
LTRIAQQTAAADPVQRAFEDLVAQLPQMSGAERYRALEALQALSAISMAHGGYSYDGSAGISVYSSALPATPLEAQLQTI
YRLGQMRVVEAVPALLTKLADDEPVVREAAARALGQIGDPRALGPLHDLLAYEPNELVQDAAIASIAQLLR
>Mature_311_residues
MLSCRISSPSGIPGESGPTLPDTERQHSPHNVPAQCPAQCCVSKTWFSMAGLQRGRDLMFTWLWTKQFSRLNQRLQSLEV
AREENLLSPDLSAQTLQVAPDFWERQHQAFVYVDKQMQRLSRRSKIWGGMALLAILADAALIVAGLTAFQSWQQVQADRQ
LTRIAQQTAAADPVQRAFEDLVAQLPQMSGAERYRALEALQALSAISMAHGGYSYDGSAGISVYSSALPATPLEAQLQTI
YRLGQMRVVEAVPALLTKLADDEPVVREAAARALGQIGDPRALGPLHDLLAYEPNELVQDAAIASIAQLLR

Specific function: Unknown

COG id: COG1413

COG function: function code C; FOG: HEAT repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34101; Mature: 34101

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: PS50077 HEAT_REPEAT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSCRISSPSGIPGESGPTLPDTERQHSPHNVPAQCPAQCCVSKTWFSMAGLQRGRDLMF
CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
TWLWTKQFSRLNQRLQSLEVAREENLLSPDLSAQTLQVAPDFWERQHQAFVYVDKQMQRL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCHHHHHHHHHHHEEHHHHHHHH
SRRSKIWGGMALLAILADAALIVAGLTAFQSWQQVQADRQLTRIAQQTAAADPVQRAFED
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
LVAQLPQMSGAERYRALEALQALSAISMAHGGYSYDGSAGISVYSSALPATPLEAQLQTI
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHH
YRLGQMRVVEAVPALLTKLADDEPVVREAAARALGQIGDPRALGPLHDLLAYEPNELVQD
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHHH
AAIASIAQLLR
HHHHHHHHHHC
>Mature Secondary Structure
MLSCRISSPSGIPGESGPTLPDTERQHSPHNVPAQCPAQCCVSKTWFSMAGLQRGRDLMF
CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
TWLWTKQFSRLNQRLQSLEVAREENLLSPDLSAQTLQVAPDFWERQHQAFVYVDKQMQRL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCHHHHHHHHHHHEEHHHHHHHH
SRRSKIWGGMALLAILADAALIVAGLTAFQSWQQVQADRQLTRIAQQTAAADPVQRAFED
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
LVAQLPQMSGAERYRALEALQALSAISMAHGGYSYDGSAGISVYSSALPATPLEAQLQTI
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHH
YRLGQMRVVEAVPALLTKLADDEPVVREAAARALGQIGDPRALGPLHDLLAYEPNELVQD
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHHH
AAIASIAQLLR
HHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA