Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

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The map label for this gene is 86609176

Identifier: 86609176

GI number: 86609176

Start: 1797699

End: 1798208

Strand: Direct

Name: 86609176

Synonym: CYB_1716

Alternate gene names: NA

Gene position: 1797699-1798208 (Clockwise)

Preceding gene: 86609174

Following gene: 86609177

Centisome position: 59.01

GC content: 58.82

Gene sequence:

>510_bases
TTGGCAAGGGTTAATCTACAGGTAAGGGATCCCTTCCTCATGCCAGCTTCCCAGTCAACCCCCAACTTGCTCATGGCTCA
CGACAGCTACCAAGAAGGCATCGCAGCGGTACAAGCGGGCGATTTCCAGGCTGCCATCCAAGCGTTTCGCCAGGCGGTTG
CTGCCGATCCAACCCATACCGAAGCTCGTTACAAGCTGGCCTGGGTACTGGGCATGAGCGGCTATCTGGATCCGGCCCTG
ACAGAGCTGGAAGCCGTTTTGGCGGCAGATCCCAACCATGTGGCAGCCCATTACAATCGAGGGGCCCTCCTCTTGCAAAA
GGCCCAACTGGAAGCCGATGAGGACGGACAAATCGATCTGGCCGTTCTGCAACAGGCGGAAGCAGCCTTTCAAGCGGTGA
TGCGCTTGGATCCCACCGACCAACGGGCCTTTGCCTTCCTCAATTTGGTCAAGCGGGCCATTCGCAACCATCAGGCGTCC
ACTCAGGTCTCCGGCGGCAGTGGCGGGTAA

Upstream 100 bases:

>100_bases
CTCCTGCTGCAGATGGCACCCCCAAGAGGGAAAAGACGGTAAACCAGCGGGGGCACGGCTCTGTTCTCGGTACCTGGGAT
GGGAATTGGGGGCAACACGT

Downstream 100 bases:

>100_bases
ATCTGTGGAGGTTGTGGTCGGCTGGTGATTGCACAGCCTGAAGCCCATTGCGTAACATAAGTAAAGCCTGGGGATCCCGG
CAATTTGGAGAGGTGTCCGA

Product: TPR domain-containing protein

Products: NA

Alternate protein names: TPR Domain-Containing Protein

Number of amino acids: Translated: 169; Mature: 168

Protein sequence:

>169_residues
MARVNLQVRDPFLMPASQSTPNLLMAHDSYQEGIAAVQAGDFQAAIQAFRQAVAADPTHTEARYKLAWVLGMSGYLDPAL
TELEAVLAADPNHVAAHYNRGALLLQKAQLEADEDGQIDLAVLQQAEAAFQAVMRLDPTDQRAFAFLNLVKRAIRNHQAS
TQVSGGSGG

Sequences:

>Translated_169_residues
MARVNLQVRDPFLMPASQSTPNLLMAHDSYQEGIAAVQAGDFQAAIQAFRQAVAADPTHTEARYKLAWVLGMSGYLDPAL
TELEAVLAADPNHVAAHYNRGALLLQKAQLEADEDGQIDLAVLQQAEAAFQAVMRLDPTDQRAFAFLNLVKRAIRNHQAS
TQVSGGSGG
>Mature_168_residues
ARVNLQVRDPFLMPASQSTPNLLMAHDSYQEGIAAVQAGDFQAAIQAFRQAVAADPTHTEARYKLAWVLGMSGYLDPALT
ELEAVLAADPNHVAAHYNRGALLLQKAQLEADEDGQIDLAVLQQAEAAFQAVMRLDPTDQRAFAFLNLVKRAIRNHQAST
QVSGGSGG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18211; Mature: 18080

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVNLQVRDPFLMPASQSTPNLLMAHDSYQEGIAAVQAGDFQAAIQAFRQAVAADPTHT
CCEEEEEECCCEECCCCCCCCCEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
EARYKLAWVLGMSGYLDPALTELEAVLAADPNHVAAHYNRGALLLQKAQLEADEDGQIDL
CHHEEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCHH
AVLQQAEAAFQAVMRLDPTDQRAFAFLNLVKRAIRNHQASTQVSGGSGG
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
ARVNLQVRDPFLMPASQSTPNLLMAHDSYQEGIAAVQAGDFQAAIQAFRQAVAADPTHT
CEEEEEECCCEECCCCCCCCCEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
EARYKLAWVLGMSGYLDPALTELEAVLAADPNHVAAHYNRGALLLQKAQLEADEDGQIDL
CHHEEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCHH
AVLQQAEAAFQAVMRLDPTDQRAFAFLNLVKRAIRNHQASTQVSGGSGG
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA