Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

Click here to switch to the map view.

The map label for this gene is 86609152

Identifier: 86609152

GI number: 86609152

Start: 1769173

End: 1769523

Strand: Direct

Name: 86609152

Synonym: CYB_1692

Alternate gene names: NA

Gene position: 1769173-1769523 (Clockwise)

Preceding gene: 86609151

Following gene: 86609154

Centisome position: 58.07

GC content: 55.56

Gene sequence:

>351_bases
ATGTCTCATTTTAGCACCCTGCGTACCAAAATCACTGACGGTCAAGTCCTGATCAACTCTCTGCGCGATCTCGGCTACAC
CGTTAAGCTGAACGCCGACGTGCGTGGCTACAACGGCCAGCGTGTTCGCGCTGACATCGTGGCTCAGTTGGAAGGCGACT
ACGATCTGGGCTGGTCGAAGAATCCCGACGGTTCCTACGACCTGATCGCCGATCTGTGGGGCGTGGCCAAGAAGCACAAC
CAAACCGAGTTGATCAACTCCATCAACCAGAAGTACGCCGTCAACAAGACCTTGGCCGAGGTGAAGCGTCCTGGCCTGAA
CAACGCCAACGTTAAAGTGGTGGTGCACTAA

Upstream 100 bases:

>100_bases
CTTGACAGAAGCAGGGACGGCAGGGCCCAAACCTTCCCCAAAGAACAGTGCCCATTGTTTGTGTCGATGTTCCAACCCCT
ATACAAAGGAGAGAAACACC

Downstream 100 bases:

>100_bases
GCCGGATCCTGTCTCGCCATCGCTGCAGCGATCTACACCGACTAAAGTTAGGAGGGGCTGAATCCAGCCCCTACTTTTTG
GCTTGGTTTTTGGATTGGAG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 116; Mature: 115

Protein sequence:

>116_residues
MSHFSTLRTKITDGQVLINSLRDLGYTVKLNADVRGYNGQRVRADIVAQLEGDYDLGWSKNPDGSYDLIADLWGVAKKHN
QTELINSINQKYAVNKTLAEVKRPGLNNANVKVVVH

Sequences:

>Translated_116_residues
MSHFSTLRTKITDGQVLINSLRDLGYTVKLNADVRGYNGQRVRADIVAQLEGDYDLGWSKNPDGSYDLIADLWGVAKKHN
QTELINSINQKYAVNKTLAEVKRPGLNNANVKVVVH
>Mature_115_residues
SHFSTLRTKITDGQVLINSLRDLGYTVKLNADVRGYNGQRVRADIVAQLEGDYDLGWSKNPDGSYDLIADLWGVAKKHNQ
TELINSINQKYAVNKTLAEVKRPGLNNANVKVVVH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12938; Mature: 12807

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHFSTLRTKITDGQVLINSLRDLGYTVKLNADVRGYNGQRVRADIVAQLEGDYDLGWSK
CCCHHHHHHHCCCCHHHHHHHHHCCEEEEECCCEECCCCCEEHEEEEEEECCCCCCCCCC
NPDGSYDLIADLWGVAKKHNQTELINSINQKYAVNKTLAEVKRPGLNNANVKVVVH
CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEC
>Mature Secondary Structure 
SHFSTLRTKITDGQVLINSLRDLGYTVKLNADVRGYNGQRVRADIVAQLEGDYDLGWSK
CCHHHHHHHCCCCHHHHHHHHHCCEEEEECCCEECCCCCEEHEEEEEEECCCCCCCCCC
NPDGSYDLIADLWGVAKKHNQTELINSINQKYAVNKTLAEVKRPGLNNANVKVVVH
CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA