| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86609018
Identifier: 86609018
GI number: 86609018
Start: 1627420
End: 1628604
Strand: Direct
Name: 86609018
Synonym: CYB_1554
Alternate gene names: NA
Gene position: 1627420-1628604 (Clockwise)
Preceding gene: 86609016
Following gene: 86609020
Centisome position: 53.42
GC content: 62.95
Gene sequence:
>1185_bases ATGGCCAACTACGACTGGATTCTGATCGGCGGTGGGATTACCGGGGCAGCCCTAAGCTATGAACTGGCCCGCCAGGGGGG ATCCGTTCTGCTGATGGAGAAAGATGGAGTGCTGAACGGAGCAACCCGCTACAGCTACGGGGGCTTGGCCCATTGGGCGG GCAAAACGCCGCTGCTCAAAGCTCTGGGGGAAGAAGGGATCCAACGCTACCGCACCCTGTCAGAAGAGCTGGAGGCAGAT ATTCAATTTCGCGAGCTGGATCTGCTCATGCCCATTGCCCCCGGCTACGATGCAGAGGCCGTTGAGGCGGATCTGGCCGA CTGTCGCATCCCACCCCGGCGGATTTCGGTGGCGGCAGCCTGCGAGCTGGAGCCGCTGCTGGATCCGGCCGCTCTGGAAG TAGTCCTCTGGGCTCGGCATGGCCACATCAACCCCTTGTTGACGGCGCTGGCCTTTCAAACAGCCTTGCAACGATTGGGG GGATCCCTCTTGATCGCAACAGCAACGGCCCTGCGGCGGCAGGGAGCGCGCATCACGGGCGTAGAGTCCGGAGCCGACTG CTACGGAGCAGGCCAGGTGGTGGTGTGCGCCGGCGGCTGGACACGGGCTCTGTTGCGCCAAGCGGGAATCCGGGTGCCCA TCTACTACACCCATGCCGAATCCCTGGAGCTGGAGCCCTCGGATTTGCAATTGAAAGCGTTGGTGATGAGCGTGCCCGTG CAACGCTTGGAACTGGAACGACAAGCCGCCCATCCCGATCGGGATCCCCTTTGGGACGAGCCAGGGCACGAGCTTTGCCC GCCGATTCTGGATGCCGGGATCCTGCAATTTGTAGATGGCAGCATTCGCATGGGCCAGATCAGCCGGGTATTGACGGATC CCCATGCCGAGGTGGATGCAGCCGCCAGCGAAGCCCAGATCCGGGCACAAGCCGGTCGCTACCTGCCCAAGTTGGCCCAC CTGCCCGGACGGTGGTATCACTGCTTGGTGGCCTTCAGCGCTGATCACCAGCCTCTGGTGGGATCCCTGCCCGGCTGGGA AGGCTTGCAACTGTTTTCCGGCTTCAGCAACCCCCTGCCCATCGTGCCCGCTTTGGCCCGTCGCTTCGCCCAACAAGCCT ATGGACAGGCGGATGAATGGATCCCTGCTCTGTCGCCGGGGCGGTTTGCCCAGGTTTTGAGTTGA
Upstream 100 bases:
>100_bases GCCAGTACCGCCACCAGTGCGGATCCGAGTTCTGCTGCGCTCGCTACCCCAAACTGAGCCTCTTTGCCGCAAGATGAGGT TCAGGGCAAAGAGGGAAGTG
Downstream 100 bases:
>100_bases TGCCTTGCCTATTCTCGATGACCATCGCCAACAAGTCTGGAATACGGCTATCCCGTCTGCAGCATAATGAAAGCCGGAAG TTCTCTGCGTCGGATCTATG
Product: oxidoreductase FAD-binding subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 394; Mature: 393
Protein sequence:
>394_residues MANYDWILIGGGITGAALSYELARQGGSVLLMEKDGVLNGATRYSYGGLAHWAGKTPLLKALGEEGIQRYRTLSEELEAD IQFRELDLLMPIAPGYDAEAVEADLADCRIPPRRISVAAACELEPLLDPAALEVVLWARHGHINPLLTALAFQTALQRLG GSLLIATATALRRQGARITGVESGADCYGAGQVVVCAGGWTRALLRQAGIRVPIYYTHAESLELEPSDLQLKALVMSVPV QRLELERQAAHPDRDPLWDEPGHELCPPILDAGILQFVDGSIRMGQISRVLTDPHAEVDAAASEAQIRAQAGRYLPKLAH LPGRWYHCLVAFSADHQPLVGSLPGWEGLQLFSGFSNPLPIVPALARRFAQQAYGQADEWIPALSPGRFAQVLS
Sequences:
>Translated_394_residues MANYDWILIGGGITGAALSYELARQGGSVLLMEKDGVLNGATRYSYGGLAHWAGKTPLLKALGEEGIQRYRTLSEELEAD IQFRELDLLMPIAPGYDAEAVEADLADCRIPPRRISVAAACELEPLLDPAALEVVLWARHGHINPLLTALAFQTALQRLG GSLLIATATALRRQGARITGVESGADCYGAGQVVVCAGGWTRALLRQAGIRVPIYYTHAESLELEPSDLQLKALVMSVPV QRLELERQAAHPDRDPLWDEPGHELCPPILDAGILQFVDGSIRMGQISRVLTDPHAEVDAAASEAQIRAQAGRYLPKLAH LPGRWYHCLVAFSADHQPLVGSLPGWEGLQLFSGFSNPLPIVPALARRFAQQAYGQADEWIPALSPGRFAQVLS >Mature_393_residues ANYDWILIGGGITGAALSYELARQGGSVLLMEKDGVLNGATRYSYGGLAHWAGKTPLLKALGEEGIQRYRTLSEELEADI QFRELDLLMPIAPGYDAEAVEADLADCRIPPRRISVAAACELEPLLDPAALEVVLWARHGHINPLLTALAFQTALQRLGG SLLIATATALRRQGARITGVESGADCYGAGQVVVCAGGWTRALLRQAGIRVPIYYTHAESLELEPSDLQLKALVMSVPVQ RLELERQAAHPDRDPLWDEPGHELCPPILDAGILQFVDGSIRMGQISRVLTDPHAEVDAAASEAQIRAQAGRYLPKLAHL PGRWYHCLVAFSADHQPLVGSLPGWEGLQLFSGFSNPLPIVPALARRFAQQAYGQADEWIPALSPGRFAQVLS
Specific function: Unknown
COG id: COG0665
COG function: function code E; Glycine/D-amino acid oxidases (deaminating)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42620; Mature: 42489
Theoretical pI: Translated: 5.24; Mature: 5.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANYDWILIGGGITGAALSYELARQGGSVLLMEKDGVLNGATRYSYGGLAHWAGKTPLLK CCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHCCCCHHHH ALGEEGIQRYRTLSEELEADIQFRELDLLMPIAPGYDAEAVEADLADCRIPPRRISVAAA HHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHHHCCCCHHHEEEEEE CELEPLLDPAALEVVLWARHGHINPLLTALAFQTALQRLGGSLLIATATALRRQGARITG ECCCCCCCHHHHEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCEEEE VESGADCYGAGQVVVCAGGWTRALLRQAGIRVPIYYTHAESLELEPSDLQLKALVMSVPV CCCCCCCCCCCEEEEECCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHCCH QRLELERQAAHPDRDPLWDEPGHELCPPILDAGILQFVDGSIRMGQISRVLTDPHAEVDA HHHHHHHHHCCCCCCCCCCCCCHHCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHH AASEAQIRAQAGRYLPKLAHLPGRWYHCLVAFSADHQPLVGSLPGWEGLQLFSGFSNPLP HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCC IVPALARRFAQQAYGQADEWIPALSPGRFAQVLS HHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHCC >Mature Secondary Structure ANYDWILIGGGITGAALSYELARQGGSVLLMEKDGVLNGATRYSYGGLAHWAGKTPLLK CCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHCCCCHHHH ALGEEGIQRYRTLSEELEADIQFRELDLLMPIAPGYDAEAVEADLADCRIPPRRISVAAA HHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHHHCCCCHHHEEEEEE CELEPLLDPAALEVVLWARHGHINPLLTALAFQTALQRLGGSLLIATATALRRQGARITG ECCCCCCCHHHHEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCEEEE VESGADCYGAGQVVVCAGGWTRALLRQAGIRVPIYYTHAESLELEPSDLQLKALVMSVPV CCCCCCCCCCCEEEEECCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHCCH QRLELERQAAHPDRDPLWDEPGHELCPPILDAGILQFVDGSIRMGQISRVLTDPHAEVDA HHHHHHHHHCCCCCCCCCCCCCHHCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHH AASEAQIRAQAGRYLPKLAHLPGRWYHCLVAFSADHQPLVGSLPGWEGLQLFSGFSNPLP HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCC IVPALARRFAQQAYGQADEWIPALSPGRFAQVLS HHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA