| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
Click here to switch to the map view.
The map label for this gene is 86608996
Identifier: 86608996
GI number: 86608996
Start: 1606419
End: 1608770
Strand: Direct
Name: 86608996
Synonym: CYB_1530
Alternate gene names: NA
Gene position: 1606419-1608770 (Clockwise)
Preceding gene: 86608994
Following gene: 86608998
Centisome position: 52.73
GC content: 54.97
Gene sequence:
>2352_bases ATGAGCTACTTGGTTATCGACACCGAGGGCAACGCCAACCTGGAAGAGATCGCCCTTATCGACAGCAGCGGCAAGCTTAT TTACCATGCCTACACCCAAGAATACTCGCCCCACCACCCCCAGCCCAAACCTTTGGCCCAAATCGTTGCTGACCTGCGGC GCTTGGCACAAGGCAAGACTCTTGTTTTCCACCATGCAGATCACGACCTAAAAATCCTTAAACAAGCCTTTGACCAAGTT AACCAAGATTGGCTTCCTAACCCCATCTTCTGTACTTGGTCAGCCGCCAAGCAATGTTTTCCCAACCTTGCCGGTTACAG CCTAGAGTATCTCAGCAAACATCTCGGGATCCAACTGGAGAGCGGTTACTTCAACTCCAAACTGGCCCACGACGCCAGCT ACGATGCCCTCTTTACCTACCACCTCTATCGCCACCTCACCCACGCTCAGCTCAAAGCCCAGAATGTTCCCAATCCTTTC GCCAACAGCAGAGTTGACAATCCCTTTCAGCATTATCCCGACGAGACCACCATCTATCAGCCTCAGTACCAGCAGCTCAC TGCCACCCTACAGGACATCCAACGGGATCCCAACCACCAGAGCCGAGGGGTTGTCTTACTGGGAGAACCTGGATCCGGCA AGACCCACCTGATCATGCGGGTGGCCCAAAACCTCCTGCGCCACAACTGTCTCCTGTTTATCCCTCAGCCCACCCATCCC GACAACATCTACCACCACATCTACAGCCACACCCTGGAATCCCTGCGCGAACGGGTAGATGCCCATCACCACACCCAGCT CGACTACTTGATTGCCAAGAGCTTTGTGGAAATCTTGAAAACCTTCCCCCAAACCTCAAAAACTGAAGAGCTTCTCTCCC TTCTCACGGCGGATCCCCTCAACCTCTTTCATCGCCTGGGAGCAGAAGGCAGCGAGCGTCGTCGTCAGCAATGGCAAGCC ATTGAAAAACTGGTTCTGCGCTGGTGGGCAGAGCAAAACTTCCTTACCGGTTCCACCGAAAACATTCTCAAGGGCATCAT CAAATACTGCAGCTACAGGGATCCCAACCGCCGTCACCAGATCATCCGCTGGCTCAGCGGTACCGACCTGGATCCTGAAG AAACCAACTTGATTGGGTTGCCCCCTTGGAGTGCAGATCTGGATCGCAACACCTTTGCCCTAGAAGGGATGAAAGTCATC GGCAGGCTTTCGCTGCTTGACCGACCTCTCATTATTGTCTTCGACCAATTGGAGGCTCTGGGCCGAGAGGAAAATCGAGA TATCCTTCTCAACTTTGGCGATGCCCTGAAAGAGCTTTTTACCCGTATTCCCAACAGTCTGTTTATCCTCAATCTGTTCC CCGACCGTTGGCAACATTTCCAAACCCAATTTGACCGGGCTACCGTCGATCGCCTCTCCCAAACCGTCCTCTCCCTAGAT CTCCCCTCTCTTCCCCAGCTTCAAGCCCTTCTCCAGAGCCGCCTGCCCTCAGGGATCCACCTCCAAGCTCTCTTTACCGC CGATGACCTGAGCGATATTCTTGGCCAACCCTCCATCCGGGCCATTCTCAACCGGGCCTCAGCCTACTATCGCCACTACA TCAACGGGATCCCTCTCCCTCCCCAGGTGCAAGTTGTACCCACTGCCAGCAATCTAGCCGCCCGTGTCCAGCGGCTCGAA ACTGAGCTGCAAACCCTCAAACAACTGCTCATCCCCCTTCTGCCTGCCCACGGCCCCTCCATCGTTCTATCTCCACCCCT TCGGGATCCCAGCCCATCTGCCGATCTTGTTGAGACGCTGGATCCCTATCTCCGCACCACTGAGGCTCAGCTCCGCGCCG CCTATCCCCAAGAGGCGATCATCGACAGCACAGCCGATATCGGCAAATTGCGCACCATCGGCAATGCCCTACAAGGGATC CATCCCCTCCCCATGAGCACCCTGAGACTGGGCCAATGCAAACTTCCAGATCACCTCTATTTCTCCGACCAGAAGCGGGT GATCGCCTTTATCCAAGTGGGTCCCAGCAGCATGTATGGACAGCTCAATAACTTCAACCAATTGGTGATTGCTCACCCCG AGCTTCAGTTTCTTTTGCTACGGGATGCCCGCCTTAAGCCTCCTTCCAAAAAGGCTACCGCCACCCAAGCGGCCTTGGCC GCCCTCAACAACAGCCCCAATGGCAAGTATGCTCTGCTCACCCAAGACGACCGCATCCATCTGGAGCTTATGCACAGGAT GATCACCGACATCCAAAACCGCGACCTGGAAATCGACCTGACCCAAGCCGTTCGGTATTATCTTGACCACAGGGATCCCC CCCTTATTGCCTGGATCCTGGGCCGTGATTAA
Upstream 100 bases:
>100_bases TGCTCACTCATCTCTAGTTCCCTTGGTGTCGGGTGAACCCGCCTACCCAGAATTACACTGAGATATTGAGCACATTAGCA TCACGGGATCCCGCCCCTCC
Downstream 100 bases:
>100_bases GCGCTCCAGATCCGTCGAAACCCCATGTTGTTCAAGGTCGGCTCCGCATCGGGATCCAGCACCGTAAAACCGGGATCCCA TATTGTCCGGCCAAGCTTGT
Product: exonuclease family protein
Products: NA
Alternate protein names: Exonuclease Family Protein
Number of amino acids: Translated: 783; Mature: 782
Protein sequence:
>783_residues MSYLVIDTEGNANLEEIALIDSSGKLIYHAYTQEYSPHHPQPKPLAQIVADLRRLAQGKTLVFHHADHDLKILKQAFDQV NQDWLPNPIFCTWSAAKQCFPNLAGYSLEYLSKHLGIQLESGYFNSKLAHDASYDALFTYHLYRHLTHAQLKAQNVPNPF ANSRVDNPFQHYPDETTIYQPQYQQLTATLQDIQRDPNHQSRGVVLLGEPGSGKTHLIMRVAQNLLRHNCLLFIPQPTHP DNIYHHIYSHTLESLRERVDAHHHTQLDYLIAKSFVEILKTFPQTSKTEELLSLLTADPLNLFHRLGAEGSERRRQQWQA IEKLVLRWWAEQNFLTGSTENILKGIIKYCSYRDPNRRHQIIRWLSGTDLDPEETNLIGLPPWSADLDRNTFALEGMKVI GRLSLLDRPLIIVFDQLEALGREENRDILLNFGDALKELFTRIPNSLFILNLFPDRWQHFQTQFDRATVDRLSQTVLSLD LPSLPQLQALLQSRLPSGIHLQALFTADDLSDILGQPSIRAILNRASAYYRHYINGIPLPPQVQVVPTASNLAARVQRLE TELQTLKQLLIPLLPAHGPSIVLSPPLRDPSPSADLVETLDPYLRTTEAQLRAAYPQEAIIDSTADIGKLRTIGNALQGI HPLPMSTLRLGQCKLPDHLYFSDQKRVIAFIQVGPSSMYGQLNNFNQLVIAHPELQFLLLRDARLKPPSKKATATQAALA ALNNSPNGKYALLTQDDRIHLELMHRMITDIQNRDLEIDLTQAVRYYLDHRDPPLIAWILGRD
Sequences:
>Translated_783_residues MSYLVIDTEGNANLEEIALIDSSGKLIYHAYTQEYSPHHPQPKPLAQIVADLRRLAQGKTLVFHHADHDLKILKQAFDQV NQDWLPNPIFCTWSAAKQCFPNLAGYSLEYLSKHLGIQLESGYFNSKLAHDASYDALFTYHLYRHLTHAQLKAQNVPNPF ANSRVDNPFQHYPDETTIYQPQYQQLTATLQDIQRDPNHQSRGVVLLGEPGSGKTHLIMRVAQNLLRHNCLLFIPQPTHP DNIYHHIYSHTLESLRERVDAHHHTQLDYLIAKSFVEILKTFPQTSKTEELLSLLTADPLNLFHRLGAEGSERRRQQWQA IEKLVLRWWAEQNFLTGSTENILKGIIKYCSYRDPNRRHQIIRWLSGTDLDPEETNLIGLPPWSADLDRNTFALEGMKVI GRLSLLDRPLIIVFDQLEALGREENRDILLNFGDALKELFTRIPNSLFILNLFPDRWQHFQTQFDRATVDRLSQTVLSLD LPSLPQLQALLQSRLPSGIHLQALFTADDLSDILGQPSIRAILNRASAYYRHYINGIPLPPQVQVVPTASNLAARVQRLE TELQTLKQLLIPLLPAHGPSIVLSPPLRDPSPSADLVETLDPYLRTTEAQLRAAYPQEAIIDSTADIGKLRTIGNALQGI HPLPMSTLRLGQCKLPDHLYFSDQKRVIAFIQVGPSSMYGQLNNFNQLVIAHPELQFLLLRDARLKPPSKKATATQAALA ALNNSPNGKYALLTQDDRIHLELMHRMITDIQNRDLEIDLTQAVRYYLDHRDPPLIAWILGRD >Mature_782_residues SYLVIDTEGNANLEEIALIDSSGKLIYHAYTQEYSPHHPQPKPLAQIVADLRRLAQGKTLVFHHADHDLKILKQAFDQVN QDWLPNPIFCTWSAAKQCFPNLAGYSLEYLSKHLGIQLESGYFNSKLAHDASYDALFTYHLYRHLTHAQLKAQNVPNPFA NSRVDNPFQHYPDETTIYQPQYQQLTATLQDIQRDPNHQSRGVVLLGEPGSGKTHLIMRVAQNLLRHNCLLFIPQPTHPD NIYHHIYSHTLESLRERVDAHHHTQLDYLIAKSFVEILKTFPQTSKTEELLSLLTADPLNLFHRLGAEGSERRRQQWQAI EKLVLRWWAEQNFLTGSTENILKGIIKYCSYRDPNRRHQIIRWLSGTDLDPEETNLIGLPPWSADLDRNTFALEGMKVIG RLSLLDRPLIIVFDQLEALGREENRDILLNFGDALKELFTRIPNSLFILNLFPDRWQHFQTQFDRATVDRLSQTVLSLDL PSLPQLQALLQSRLPSGIHLQALFTADDLSDILGQPSIRAILNRASAYYRHYINGIPLPPQVQVVPTASNLAARVQRLET ELQTLKQLLIPLLPAHGPSIVLSPPLRDPSPSADLVETLDPYLRTTEAQLRAAYPQEAIIDSTADIGKLRTIGNALQGIH PLPMSTLRLGQCKLPDHLYFSDQKRVIAFIQVGPSSMYGQLNNFNQLVIAHPELQFLLLRDARLKPPSKKATATQAALAA LNNSPNGKYALLTQDDRIHLELMHRMITDIQNRDLEIDLTQAVRYYLDHRDPPLIAWILGRD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 89232; Mature: 89101
Theoretical pI: Translated: 7.00; Mature: 7.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYLVIDTEGNANLEEIALIDSSGKLIYHAYTQEYSPHHPQPKPLAQIVADLRRLAQGKT CCEEEEECCCCCCHHHEEEEECCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCE LVFHHADHDLKILKQAFDQVNQDWLPNPIFCTWSAAKQCFPNLAGYSLEYLSKHLGIQLE EEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHCCCCCCCHHHHHHHHHCEEEE SGYFNSKLAHDASYDALFTYHLYRHLTHAQLKAQNVPNPFANSRVDNPFQHYPDETTIYQ CCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCEEEC PQYQQLTATLQDIQRDPNHQSRGVVLLGEPGSGKTHLIMRVAQNLLRHNCLLFIPQPTHP CHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEECCCCCC DNIYHHIYSHTLESLRERVDAHHHTQLDYLIAKSFVEILKTFPQTSKTEELLSLLTADPL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHH NLFHRLGAEGSERRRQQWQAIEKLVLRWWAEQNFLTGSTENILKGIIKYCSYRDPNRRHQ HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHH IIRWLSGTDLDPEETNLIGLPPWSADLDRNTFALEGMKVIGRLSLLDRPLIIVFDQLEAL HHHHHCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEHHHHHH GREENRDILLNFGDALKELFTRIPNSLFILNLFPDRWQHFQTQFDRATVDRLSQTVLSLD CCCCCCEEEEECHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCC LPSLPQLQALLQSRLPSGIHLQALFTADDLSDILGQPSIRAILNRASAYYRHYINGIPLP CCCCHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCC PQVQVVPTASNLAARVQRLETELQTLKQLLIPLLPAHGPSIVLSPPLRDPSPSADLVETL CCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCHHHHHHH DPYLRTTEAQLRAAYPQEAIIDSTADIGKLRTIGNALQGIHPLPMSTLRLGQCKLPDHLY HHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCE FSDQKRVIAFIQVGPSSMYGQLNNFNQLVIAHPELQFLLLRDARLKPPSKKATATQAALA ECCCCEEEEEEEECCHHHHHCCCCCCEEEEECCCEEEEEEECCCCCCCCCHHHHHHHHHH ALNNSPNGKYALLTQDDRIHLELMHRMITDIQNRDLEIDLTQAVRYYLDHRDPPLIAWIL HHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHCCCCCCEEEEEE GRD CCC >Mature Secondary Structure SYLVIDTEGNANLEEIALIDSSGKLIYHAYTQEYSPHHPQPKPLAQIVADLRRLAQGKT CEEEEECCCCCCHHHEEEEECCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCE LVFHHADHDLKILKQAFDQVNQDWLPNPIFCTWSAAKQCFPNLAGYSLEYLSKHLGIQLE EEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHCCCCCCCHHHHHHHHHCEEEE SGYFNSKLAHDASYDALFTYHLYRHLTHAQLKAQNVPNPFANSRVDNPFQHYPDETTIYQ CCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCEEEC PQYQQLTATLQDIQRDPNHQSRGVVLLGEPGSGKTHLIMRVAQNLLRHNCLLFIPQPTHP CHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEECCCCCC DNIYHHIYSHTLESLRERVDAHHHTQLDYLIAKSFVEILKTFPQTSKTEELLSLLTADPL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHH NLFHRLGAEGSERRRQQWQAIEKLVLRWWAEQNFLTGSTENILKGIIKYCSYRDPNRRHQ HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHH IIRWLSGTDLDPEETNLIGLPPWSADLDRNTFALEGMKVIGRLSLLDRPLIIVFDQLEAL HHHHHCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEHHHHHH GREENRDILLNFGDALKELFTRIPNSLFILNLFPDRWQHFQTQFDRATVDRLSQTVLSLD CCCCCCEEEEECHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCC LPSLPQLQALLQSRLPSGIHLQALFTADDLSDILGQPSIRAILNRASAYYRHYINGIPLP CCCCHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCC PQVQVVPTASNLAARVQRLETELQTLKQLLIPLLPAHGPSIVLSPPLRDPSPSADLVETL CCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCHHHHHHH DPYLRTTEAQLRAAYPQEAIIDSTADIGKLRTIGNALQGIHPLPMSTLRLGQCKLPDHLY HHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCE FSDQKRVIAFIQVGPSSMYGQLNNFNQLVIAHPELQFLLLRDARLKPPSKKATATQAALA ECCCCEEEEEEEECCHHHHHCCCCCCEEEEECCCEEEEEEECCCCCCCCCHHHHHHHHHH ALNNSPNGKYALLTQDDRIHLELMHRMITDIQNRDLEIDLTQAVRYYLDHRDPPLIAWIL HHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHCCCCCCEEEEEE GRD CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA