| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is ancA [H]
Identifier: 86608870
GI number: 86608870
Start: 1468881
End: 1470101
Strand: Reverse
Name: ancA [H]
Synonym: CYB_1401
Alternate gene names: 86608870
Gene position: 1470101-1468881 (Counterclockwise)
Preceding gene: 86608871
Following gene: 86608868
Centisome position: 48.25
GC content: 60.85
Gene sequence:
>1221_bases ATGTTTCCCTCTCTTTTAAATCCACGTGCAGCAGGCATACTCCTATCGGGAGCTGTCTTGGGCATCCACTGCCAGGTGGC CATGGCCGCCCCTTTTCGCGACACCTTTGGCCACTGGGCCCAAGCCTACATTGAGACCCTCTCCGCTCAGGGCGTGTTGA ACGGCTTCCCCGATGGTACCTTCCGCCCCAATGAGCCGGTTACCCGCGCTCAGTTTGCCACCATTGTCAATACCGCTTTC CGCCTCCGCAATACCTCCGGTACTTTTATCGGCTTTCGGGATGTGCCCCCCACCCACTGGGCAGCCAGTGCCATCTCGAC GGCAGCGGCCAACAACTTAGTCGCAGGCTTTCCTGATGGCACCTTCCGTCCTGAACAGCCCGTTACCCGCACCGAAGCGC TGGTGGTTTTGACCAACGCCATTGGCAACACGGGAGCGATCCCAGCCGCTCAGCCCAGCGATCTCTTCAGCCGCTATCGA GATGCGGCAGCCATCCCCAATTGGGCCCTGGCACAACTTGCGGCAGCCAACCGCGCCGGGTTGATTGTCAATTATCCAGA CCCGATGCTCTTGGAACCCAACCGCCCCGCCACCCGTGCCGAGGTGGCAGCCTTCACCCACCAGGCCATGCTCAGCCGGG GATCCTTGGTGGCACAAAACCCAGGGGGCTTGCCCTCCGGTTCCCAGCCAGGCTTTGACCTGCGCCTTTCCACCCTAGCG GCGGGCACCCTGATGCAAACCACCACCCCCTTCAACGAGCGCCTCTTCATTGCCCCCAACGAAACCCGGCCCATGTCTTT GATCGTCCGCAACCCGATTCGCAACGCCCAGGGGGATATTCTGGTGCCTTTTGGCTCGCGGGTGGATGGCCGCTTTGAGC CAGCCCCAGGGGGCACCCGTTTTGTGGCGGAAAGCATCATTGTCAACAACCAACTGTTCCCCTTGGCTGCCCAGTCAGAC ATCATCCACGATGTCAAGGATCCCCGCTACACCACCACAGGCAAAATCATTCAGGATGCGGCCATCGGTGCAGCAGCAGG CGCTATTCTCGGCTTGGTAACCGGAGACAATGCCATTGCCACAGAGGAAGTGCTGGGGGCAGGGGTGGCCGGAGCGGTAA TTGGCAATGTAACGGCACCACAGGTGGTGGTGCTGGATCCCAATCAGGTGATCGAGCTGCGCCTCACTCAGGATCTGGCG CTGACCCCAGCATCCCGATAA
Upstream 100 bases:
>100_bases AGAGCAAGGGTTTTAGCCATTGTCATCACTGAGGAAATAGCCAGAATAAAAGTAGCCATCGACCCAGCAATGGGCGCTAC GACAACTCGGTGAACGAACG
Downstream 100 bases:
>100_bases AAGCGGTGCTGGCATAGCTATCTTCCCAGCCAATCCAAAAGGGTTGTTCCCCCCAACCACAGGCCGATCAAAATGGAAGT GGTCAGCAGTCCTCCTGCTA
Product: S-layer protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 406; Mature: 406
Protein sequence:
>406_residues MFPSLLNPRAAGILLSGAVLGIHCQVAMAAPFRDTFGHWAQAYIETLSAQGVLNGFPDGTFRPNEPVTRAQFATIVNTAF RLRNTSGTFIGFRDVPPTHWAASAISTAAANNLVAGFPDGTFRPEQPVTRTEALVVLTNAIGNTGAIPAAQPSDLFSRYR DAAAIPNWALAQLAAANRAGLIVNYPDPMLLEPNRPATRAEVAAFTHQAMLSRGSLVAQNPGGLPSGSQPGFDLRLSTLA AGTLMQTTTPFNERLFIAPNETRPMSLIVRNPIRNAQGDILVPFGSRVDGRFEPAPGGTRFVAESIIVNNQLFPLAAQSD IIHDVKDPRYTTTGKIIQDAAIGAAAGAILGLVTGDNAIATEEVLGAGVAGAVIGNVTAPQVVVLDPNQVIELRLTQDLA LTPASR
Sequences:
>Translated_406_residues MFPSLLNPRAAGILLSGAVLGIHCQVAMAAPFRDTFGHWAQAYIETLSAQGVLNGFPDGTFRPNEPVTRAQFATIVNTAF RLRNTSGTFIGFRDVPPTHWAASAISTAAANNLVAGFPDGTFRPEQPVTRTEALVVLTNAIGNTGAIPAAQPSDLFSRYR DAAAIPNWALAQLAAANRAGLIVNYPDPMLLEPNRPATRAEVAAFTHQAMLSRGSLVAQNPGGLPSGSQPGFDLRLSTLA AGTLMQTTTPFNERLFIAPNETRPMSLIVRNPIRNAQGDILVPFGSRVDGRFEPAPGGTRFVAESIIVNNQLFPLAAQSD IIHDVKDPRYTTTGKIIQDAAIGAAAGAILGLVTGDNAIATEEVLGAGVAGAVIGNVTAPQVVVLDPNQVIELRLTQDLA LTPASR >Mature_406_residues MFPSLLNPRAAGILLSGAVLGIHCQVAMAAPFRDTFGHWAQAYIETLSAQGVLNGFPDGTFRPNEPVTRAQFATIVNTAF RLRNTSGTFIGFRDVPPTHWAASAISTAAANNLVAGFPDGTFRPEQPVTRTEALVVLTNAIGNTGAIPAAQPSDLFSRYR DAAAIPNWALAQLAAANRAGLIVNYPDPMLLEPNRPATRAEVAAFTHQAMLSRGSLVAQNPGGLPSGSQPGFDLRLSTLA AGTLMQTTTPFNERLFIAPNETRPMSLIVRNPIRNAQGDILVPFGSRVDGRFEPAPGGTRFVAESIIVNNQLFPLAAQSD IIHDVKDPRYTTTGKIIQDAAIGAAAGAILGLVTGDNAIATEEVLGAGVAGAVIGNVTAPQVVVLDPNQVIELRLTQDLA LTPASR
Specific function: Anchors the cellulosome to the cell surface by binding the duplicated segment that is present at the C-terminal end of CipA [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted, cell wall, S-layer [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 3 SLH (S-layer homology) domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008965 - InterPro: IPR002102 - InterPro: IPR018452 - InterPro: IPR001119 [H]
Pfam domain/function: PF00963 Cohesin; PF00395 SLH [H]
EC number: NA
Molecular weight: Translated: 42707; Mature: 42707
Theoretical pI: Translated: 6.69; Mature: 6.69
Prosite motif: PS01072 SLH_DOMAIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFPSLLNPRAAGILLSGAVLGIHCQVAMAAPFRDTFGHWAQAYIETLSAQGVLNGFPDGT CCCCCCCCCCCCEEEECEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC FRPNEPVTRAQFATIVNTAFRLRNTSGTFIGFRDVPPTHWAASAISTAAANNLVAGFPDG CCCCCCCHHHHHHHHHHHHHEEECCCCCEEEEECCCCCHHHHHHHHHHHHCCEEEECCCC TFRPEQPVTRTEALVVLTNAIGNTGAIPAAQPSDLFSRYRDAAAIPNWALAQLAAANRAG CCCCCCCCCHHEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCC LIVNYPDPMLLEPNRPATRAEVAAFTHQAMLSRGSLVAQNPGGLPSGSQPGFDLRLSTLA EEEECCCCEEECCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCEEEEHHHH AGTLMQTTTPFNERLFIAPNETRPMSLIVRNPIRNAQGDILVPFGSRVDGRFEPAPGGTR CCHHEECCCCCCCEEEECCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCEECCCCCCHH FVAESIIVNNQLFPLAAQSDIIHDVKDPRYTTTGKIIQDAAIGAAAGAILGLVTGDNAIA HHHHHHHCCCCCCCEECCCHHHHHCCCCCEECCCHHHHHHHHHHHHCEEEEEEECCCCHH TEEVLGAGVAGAVIGNVTAPQVVVLDPNQVIELRLTQDLALTPASR HHHHHCCCHHHHHHCCCCCCEEEEECCCCEEEEEEECCEECCCCCC >Mature Secondary Structure MFPSLLNPRAAGILLSGAVLGIHCQVAMAAPFRDTFGHWAQAYIETLSAQGVLNGFPDGT CCCCCCCCCCCCEEEECEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC FRPNEPVTRAQFATIVNTAFRLRNTSGTFIGFRDVPPTHWAASAISTAAANNLVAGFPDG CCCCCCCHHHHHHHHHHHHHEEECCCCCEEEEECCCCCHHHHHHHHHHHHCCEEEECCCC TFRPEQPVTRTEALVVLTNAIGNTGAIPAAQPSDLFSRYRDAAAIPNWALAQLAAANRAG CCCCCCCCCHHEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCC LIVNYPDPMLLEPNRPATRAEVAAFTHQAMLSRGSLVAQNPGGLPSGSQPGFDLRLSTLA EEEECCCCEEECCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCEEEEHHHH AGTLMQTTTPFNERLFIAPNETRPMSLIVRNPIRNAQGDILVPFGSRVDGRFEPAPGGTR CCHHEECCCCCCCEEEECCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCEECCCCCCHH FVAESIIVNNQLFPLAAQSDIIHDVKDPRYTTTGKIIQDAAIGAAAGAILGLVTGDNAIA HHHHHHHCCCCCCCEECCCHHHHHCCCCCEECCCHHHHHHHHHHHHCEEEEEEECCCCHH TEEVLGAGVAGAVIGNVTAPQVVVLDPNQVIELRLTQDLALTPASR HHHHHCCCHHHHHHCCCCCCEEEEECCCCEEEEEEECCEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8458832 [H]