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The map label for this gene is xerC [H]

Identifier: 86608861

GI number: 86608861

Start: 1464369

End: 1465361

Strand: Direct

Name: xerC [H]

Synonym: CYB_1392

Alternate gene names: 86608861

Gene position: 1464369-1465361 (Clockwise)

Preceding gene: 86608860

Following gene: 86608864

Centisome position: 48.06

GC content: 62.03

Gene sequence:

>993_bases
ATGAGGGAGCCTCGATCGGGCTGGGCTCAGGAGACCCATCCCCAGAGTCAGCCGACTGGCCCTGTTCCCAGCCTCAGCCA
TCTGGCGGCGCAATTTTTGCAGGAGCGGCAGCGGGATCTGGCCCCGGCTAGCCGCCGCACCTATCGCATCGCTCTGGAGC
AGTTTGCCAAAACTTGCCCCGTGCCGCTGCCCCAGGTGCAGCCTGCCCACGTCCAGTCCTTTTTGAACAGCTTGAAGGGC
CGTCCGTTTCGCAACCGCTCCGGCCAGCGGATCCACCCGCCCGCCTCTCCGGCCACCTACAACCTGAAGCGGTTGGCCTT
GCAGCAATTTTTTGAATGGGCCAGCCAACGGGGCTACCTTCAGGATCCCCTGCCCACTCAAGCCATTCGACCTGCCCGCC
TACCCGCTCGTTTGCCTCGCGATCTAGATCGGTTGTTGTTGCAGCGGGTGTTGCAGCGGGCCCAAAACCATTCTCTGCGC
TACGCGGCTTTGATTCGCCTGATGCTGGAGTGCGGGCTGCGGGCCCAGGAGCTGTTGGACTTAACCGTTCAAGATTTTCA
AATCAGCCCTGAGGGATCCCTGTTGGAAGTGCGCTGTGGCAAGGGGAGCAAACCCCGCGCTGTGGCAGTAGGGGATCCCC
TCTCCGAGCTGTTGCAGCAGTATCTGAGCCGAGAACGGGGCCCGTGCGCGCCGACGGATCCCTTGTTTGTTTCCCAATCT
CGCTGCTTGGCCTACCGGGGGCGCCCCCTCACCTACGATGGCCTGCGGCATATTGTGCTCAAGCTAACCGAGCCTGAGCC
GGGACATCAAACCCCCCACCAGTTTCGCCACAGTTTTGCCACCTTGTTGCTGGATCGCGGCGTTGCCCCCGAACACATTC
AGCACTTGCTGGGCCACACAACTGCCGCCATGACGATGCGCTACACCCAGCGGGCCAACTTGAGAGCAGCCATCGCCCGT
TCCCGCGAGATCTTAAATCAGGGCTTGGTTTAG

Upstream 100 bases:

>100_bases
CAGTAGCCATCGACTCTCAGGTCGGGATCCCTCTCTGGACAGCAGCTGGCCACAAGTTGAGGATAAAGTTAAGGGCTAGC
AGAGGGATGGAGGTGGCAGG

Downstream 100 bases:

>100_bases
GGATCCCTGGCTGTACTATGGCCTCTGTCGTTTCCAGTGAGACAGACGCGGATTGCTCGCAGAAAGAGGGATCCCCAAAA
AGAGATCAAGGATCCTCAAG

Product: phage integrase family site specific recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MREPRSGWAQETHPQSQPTGPVPSLSHLAAQFLQERQRDLAPASRRTYRIALEQFAKTCPVPLPQVQPAHVQSFLNSLKG
RPFRNRSGQRIHPPASPATYNLKRLALQQFFEWASQRGYLQDPLPTQAIRPARLPARLPRDLDRLLLQRVLQRAQNHSLR
YAALIRLMLECGLRAQELLDLTVQDFQISPEGSLLEVRCGKGSKPRAVAVGDPLSELLQQYLSRERGPCAPTDPLFVSQS
RCLAYRGRPLTYDGLRHIVLKLTEPEPGHQTPHQFRHSFATLLLDRGVAPEHIQHLLGHTTAAMTMRYTQRANLRAAIAR
SREILNQGLV

Sequences:

>Translated_330_residues
MREPRSGWAQETHPQSQPTGPVPSLSHLAAQFLQERQRDLAPASRRTYRIALEQFAKTCPVPLPQVQPAHVQSFLNSLKG
RPFRNRSGQRIHPPASPATYNLKRLALQQFFEWASQRGYLQDPLPTQAIRPARLPARLPRDLDRLLLQRVLQRAQNHSLR
YAALIRLMLECGLRAQELLDLTVQDFQISPEGSLLEVRCGKGSKPRAVAVGDPLSELLQQYLSRERGPCAPTDPLFVSQS
RCLAYRGRPLTYDGLRHIVLKLTEPEPGHQTPHQFRHSFATLLLDRGVAPEHIQHLLGHTTAAMTMRYTQRANLRAAIAR
SREILNQGLV
>Mature_330_residues
MREPRSGWAQETHPQSQPTGPVPSLSHLAAQFLQERQRDLAPASRRTYRIALEQFAKTCPVPLPQVQPAHVQSFLNSLKG
RPFRNRSGQRIHPPASPATYNLKRLALQQFFEWASQRGYLQDPLPTQAIRPARLPARLPRDLDRLLLQRVLQRAQNHSLR
YAALIRLMLECGLRAQELLDLTVQDFQISPEGSLLEVRCGKGSKPRAVAVGDPLSELLQQYLSRERGPCAPTDPLFVSQS
RCLAYRGRPLTYDGLRHIVLKLTEPEPGHQTPHQFRHSFATLLLDRGVAPEHIQHLLGHTTAAMTMRYTQRANLRAAIAR
SREILNQGLV

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=220, Percent_Identity=31.3636363636364, Blast_Score=79, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 37360; Mature: 37360

Theoretical pI: Translated: 11.14; Mature: 11.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREPRSGWAQETHPQSQPTGPVPSLSHLAAQFLQERQRDLAPASRRTYRIALEQFAKTCP
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
VPLPQVQPAHVQSFLNSLKGRPFRNRSGQRIHPPASPATYNLKRLALQQFFEWASQRGYL
CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
QDPLPTQAIRPARLPARLPRDLDRLLLQRVLQRAQNHSLRYAALIRLMLECGLRAQELLD
CCCCCHHHCCCCCCCHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHH
LTVQDFQISPEGSLLEVRCGKGSKPRAVAVGDPLSELLQQYLSRERGPCAPTDPLFVSQS
HHHHHEEECCCCCEEEEECCCCCCCCEEECCCHHHHHHHHHHHHCCCCCCCCCCCEECCC
RCLAYRGRPLTYDGLRHIVLKLTEPEPGHQTPHQFRHSFATLLLDRGVAPEHIQHLLGHT
HHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
TAAMTMRYTQRANLRAAIARSREILNQGLV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MREPRSGWAQETHPQSQPTGPVPSLSHLAAQFLQERQRDLAPASRRTYRIALEQFAKTCP
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
VPLPQVQPAHVQSFLNSLKGRPFRNRSGQRIHPPASPATYNLKRLALQQFFEWASQRGYL
CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
QDPLPTQAIRPARLPARLPRDLDRLLLQRVLQRAQNHSLRYAALIRLMLECGLRAQELLD
CCCCCHHHCCCCCCCHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHH
LTVQDFQISPEGSLLEVRCGKGSKPRAVAVGDPLSELLQQYLSRERGPCAPTDPLFVSQS
HHHHHEEECCCCCEEEEECCCCCCCCEEECCCHHHHHHHHHHHHCCCCCCCCCCCEECCC
RCLAYRGRPLTYDGLRHIVLKLTEPEPGHQTPHQFRHSFATLLLDRGVAPEHIQHLLGHT
HHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
TAAMTMRYTQRANLRAAIARSREILNQGLV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA