| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608843
Identifier: 86608843
GI number: 86608843
Start: 1439945
End: 1440508
Strand: Direct
Name: 86608843
Synonym: CYB_1369
Alternate gene names: NA
Gene position: 1439945-1440508 (Clockwise)
Preceding gene: 86608841
Following gene: 86608844
Centisome position: 47.26
GC content: 57.09
Gene sequence:
>564_bases GTGGCTTTGGGGTTTGCCACCCTTGCCCTGCTTTCTCAAGGTGCGTTCGATCCCGCCCAAGCTGGCAACTGCCCCAGCAA CGGCAACCCCAAAACATCTCTTGACCTCAAGGTGGAAAGCGTTTCTGGGGATCGGCTTGACCTAAGTCGGTATGAGGGCA TTCAAGCGTTGATCTTGACCAACAGCCAAACCCGCTCGCAATCGGAAGCCCTCTCCAAAAGTTTGGCCCTGGAGTTTGGG CAAAACCCTCGGCTGCGCCAGATCGTGCTGGTGGATGGCAGGGGGCTGCTGCTGGTGCGCCACTTGGTTTTGCAGGCCAT CCGGGAGAGTGTACCGACGGATCCCCGCCTGGTTTCTCCGTTTGTGTATGTCTCGGTCGATTTTGAGGGAGCAACCATCC AGAAGCTGCAAGAAATAGCCGCTGCAACCTTGCCTGGGATCAATTTTCGCCGCCAGGCTGTTTTGTTGCTGTTGGACGGC CAGGGAACTCTTCTGAGCGGATTTGCCGACTTGGAGCAATCCAACCTCAGCATTCGCCGGTGCATTCGCACCCTCATCGG ATAG
Upstream 100 bases:
>100_bases ATTTGGCCGGCCCGCTCCAGAACTCCCCGCCATGAACCGAGTGCTGTCCTGCTGCTGTGCCCCGGCTAACCGCTGCTGGC TTTGCGTTCAAAAGAGACTT
Downstream 100 bases:
>100_bases TCCCACTTCCCTTTCACACCGGCAACGCCTCTCCCCTGCTGCTCTGGCCCAAGCCATTAAACTGGTCATACCGGTCATGT TGAAGCTTGAAGTCAACCAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 187; Mature: 186
Protein sequence:
>187_residues MALGFATLALLSQGAFDPAQAGNCPSNGNPKTSLDLKVESVSGDRLDLSRYEGIQALILTNSQTRSQSEALSKSLALEFG QNPRLRQIVLVDGRGLLLVRHLVLQAIRESVPTDPRLVSPFVYVSVDFEGATIQKLQEIAAATLPGINFRRQAVLLLLDG QGTLLSGFADLEQSNLSIRRCIRTLIG
Sequences:
>Translated_187_residues MALGFATLALLSQGAFDPAQAGNCPSNGNPKTSLDLKVESVSGDRLDLSRYEGIQALILTNSQTRSQSEALSKSLALEFG QNPRLRQIVLVDGRGLLLVRHLVLQAIRESVPTDPRLVSPFVYVSVDFEGATIQKLQEIAAATLPGINFRRQAVLLLLDG QGTLLSGFADLEQSNLSIRRCIRTLIG >Mature_186_residues ALGFATLALLSQGAFDPAQAGNCPSNGNPKTSLDLKVESVSGDRLDLSRYEGIQALILTNSQTRSQSEALSKSLALEFGQ NPRLRQIVLVDGRGLLLVRHLVLQAIRESVPTDPRLVSPFVYVSVDFEGATIQKLQEIAAATLPGINFRRQAVLLLLDGQ GTLLSGFADLEQSNLSIRRCIRTLIG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20185; Mature: 20053
Theoretical pI: Translated: 8.22; Mature: 8.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALGFATLALLSQGAFDPAQAGNCPSNGNPKTSLDLKVESVSGDRLDLSRYEGIQALILT CCCHHHHHHHHHCCCCCCHHCCCCCCCCCCCCEEEEEEEECCCCEEEHHHHCCEEEEEEE NSQTRSQSEALSKSLALEFGQNPRLRQIVLVDGRGLLLVRHLVLQAIRESVPTDPRLVSP CCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEECC FVYVSVDFEGATIQKLQEIAAATLPGINFRRQAVLLLLDGQGTLLSGFADLEQSNLSIRR EEEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEHHHHHHHHCCCHHHH CIRTLIG HHHHHCC >Mature Secondary Structure ALGFATLALLSQGAFDPAQAGNCPSNGNPKTSLDLKVESVSGDRLDLSRYEGIQALILT CCHHHHHHHHHCCCCCCHHCCCCCCCCCCCCEEEEEEEECCCCEEEHHHHCCEEEEEEE NSQTRSQSEALSKSLALEFGQNPRLRQIVLVDGRGLLLVRHLVLQAIRESVPTDPRLVSP CCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEECC FVYVSVDFEGATIQKLQEIAAATLPGINFRRQAVLLLLDGQGTLLSGFADLEQSNLSIRR EEEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEHHHHHHHHCCCHHHH CIRTLIG HHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA