| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608760
Identifier: 86608760
GI number: 86608760
Start: 1339837
End: 1340559
Strand: Reverse
Name: 86608760
Synonym: CYB_1285
Alternate gene names: NA
Gene position: 1340559-1339837 (Counterclockwise)
Preceding gene: 86608765
Following gene: 86608759
Centisome position: 44.0
GC content: 59.89
Gene sequence:
>723_bases GTGCGGCTGCAATTGCCGATGCTGGAGCGGATCAATCTGGGAGAATTGGAAAATGCCGAGGCCCGCAAAAACCGCAACAT TGCCCTGGCCAATACGCTGGGGTGGCTGGGCTACCGCAACTTGGGGGCTTCCTGGCTGTGGCTGGAGCTGATCCAGTACT ACGGGGATGCACCGGCTCGCACCCTGACTGGCTATGGCCTGGCCTACGACTACTTCGATCACATGCTGCGGCTGGATCCC CATTTCCTCTTGGGCTACCGGCTCTCTAGTTTGGTGTTGGCCTATCGGGCCGGCCAGCCGGAAAAAGCCGTCGAGATTTT GGATCGCGGCTTGCAGCAGTTCAACCCCCAAAACAACCCTGACGCCTGGCGACTCTACGTGGATCGTGCTCTACTTAACT TTATGTTTCTGGGGGACGCGGAAGCGGGCCGCACCGATTACTACCAAGCTGCTGCCTGGCGAGAGCAGGTGGGCCTGCCT GGAGATGAATTTCGCCAGTTGGGGGATAACATCGCCCGCAGTCCTCTCAGCCGCCGTTCCCAATTCGATGTTTGGCTGAG CGTGTTTAACTCCACCACCGACCGGGATACCCGCCTGTACGTCCTGGAACAACTGGTCCAGTTGGGTACCGTGCTGCAAA CGCTGCCTACGGGGGAGATCGAGATCCTGCCCCCTCCTCTGCCCGACTTCCCCGACGAGGAACCCTATCGCTTGCGCCTG TGA
Upstream 100 bases:
>100_bases TGCCATGACTGCTGCTTCCCTGCCCCGTCGCCGCTCTCGCTTCTCCCTGGCAGGCACTCTGGCCGCCGTTGGGGGAGCGT TTCTGTTTGGGATCCTGGTG
Downstream 100 bases:
>100_bases TTTGATCCGGGGGACAAAGATTGCGCCTTATGGCTGTGACGTTGCCCCAAAAGGTGAGCTAAACTCTAACCCAAATTAAG CCGACCCCACGAGCCGACTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 240; Mature: 240
Protein sequence:
>240_residues MRLQLPMLERINLGELENAEARKNRNIALANTLGWLGYRNLGASWLWLELIQYYGDAPARTLTGYGLAYDYFDHMLRLDP HFLLGYRLSSLVLAYRAGQPEKAVEILDRGLQQFNPQNNPDAWRLYVDRALLNFMFLGDAEAGRTDYYQAAAWREQVGLP GDEFRQLGDNIARSPLSRRSQFDVWLSVFNSTTDRDTRLYVLEQLVQLGTVLQTLPTGEIEILPPPLPDFPDEEPYRLRL
Sequences:
>Translated_240_residues MRLQLPMLERINLGELENAEARKNRNIALANTLGWLGYRNLGASWLWLELIQYYGDAPARTLTGYGLAYDYFDHMLRLDP HFLLGYRLSSLVLAYRAGQPEKAVEILDRGLQQFNPQNNPDAWRLYVDRALLNFMFLGDAEAGRTDYYQAAAWREQVGLP GDEFRQLGDNIARSPLSRRSQFDVWLSVFNSTTDRDTRLYVLEQLVQLGTVLQTLPTGEIEILPPPLPDFPDEEPYRLRL >Mature_240_residues MRLQLPMLERINLGELENAEARKNRNIALANTLGWLGYRNLGASWLWLELIQYYGDAPARTLTGYGLAYDYFDHMLRLDP HFLLGYRLSSLVLAYRAGQPEKAVEILDRGLQQFNPQNNPDAWRLYVDRALLNFMFLGDAEAGRTDYYQAAAWREQVGLP GDEFRQLGDNIARSPLSRRSQFDVWLSVFNSTTDRDTRLYVLEQLVQLGTVLQTLPTGEIEILPPPLPDFPDEEPYRLRL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27695; Mature: 27695
Theoretical pI: Translated: 4.72; Mature: 4.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLQLPMLERINLGELENAEARKNRNIALANTLGWLGYRNLGASWLWLELIQYYGDAPAR CCCCCCHHHCCCCCCCCCCHHHHCCCEEEEHHHHHHHHHHCCHHHHHHHHHHHHCCCCHH TLTGYGLAYDYFDHMLRLDPHFLLGYRLSSLVLAYRAGQPEKAVEILDRGLQQFNPQNNP HHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC DAWRLYVDRALLNFMFLGDAEAGRTDYYQAAAWREQVGLPGDEFRQLGDNIARSPLSRRS CHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHH QFDVWLSVFNSTTDRDTRLYVLEQLVQLGTVLQTLPTGEIEILPPPLPDFPDEEPYRLRL HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCEECC >Mature Secondary Structure MRLQLPMLERINLGELENAEARKNRNIALANTLGWLGYRNLGASWLWLELIQYYGDAPAR CCCCCCHHHCCCCCCCCCCHHHHCCCEEEEHHHHHHHHHHCCHHHHHHHHHHHHCCCCHH TLTGYGLAYDYFDHMLRLDPHFLLGYRLSSLVLAYRAGQPEKAVEILDRGLQQFNPQNNP HHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC DAWRLYVDRALLNFMFLGDAEAGRTDYYQAAAWREQVGLPGDEFRQLGDNIARSPLSRRS CHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHH QFDVWLSVFNSTTDRDTRLYVLEQLVQLGTVLQTLPTGEIEILPPPLPDFPDEEPYRLRL HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA