Click here to switch to the map view.

The map label for this gene is ydcM [C]

Identifier: 86608628

GI number: 86608628

Start: 1190676

End: 1191869

Strand: Direct

Name: ydcM [C]

Synonym: CYB_1151

Alternate gene names: 86608628

Gene position: 1190676-1191869 (Clockwise)

Preceding gene: 86608626

Following gene: 86608629

Centisome position: 39.08

GC content: 54.86

Gene sequence:

>1194_bases
ATGAGCCAAGTCCTGACCATATCCTGTAAGCTCAAGGTAGCCCAGTCGCAAGCCGCCAAATTGGACGCGACGATGGATGC
CTTTGTACAGGCATTGAACTGGGTCAACCAAAACACACCAGAAAAAGTAGTCAACGCAGTCAAACTCCAATCCCTTTGCT
ACTACGAGATTCGAGCCCGGTTTGGCTTGTCCAGTAACTTGGCTCAACAGGTATGCAGACGGGTAGCGGGTTCCCGCAAA
GTGGCTAAGCAGAAAAAGCGTCCCGTCAAGGAGTTTAAGAGCGGCTTTGTTACCTACGACGCCCGTATCTTTTCGTTCCG
TCAAAAAGACTGGACGGTGTCGCTGACCACGGTGGAAGGGAGAGAACGCTTTGAACTGGCCATTGGCAACTACCAGCGTG
GGATGCTGGCTGGTTCCAACCCCAAATCTGCCACCCTGGTCAAGCGCAAAGATGGCTCCTACTACATCCAGATTTGCGTA
GAGAAAAAACCACCCAAGCAACAAGATACCGACAAGGTGATCGGGGTGGACTTGGGGAGGACGGATATTGCCCATACGTC
AGAGGGGGACAACTGGAATGGACAGCAGTTGAACCGAGTCCGCGACCACTACTCCAAGCTGAGGGCGGCACTCCAACGCA
AAGCCAGTAAGGGCACACGCAGTTCGCGGCGCAGATGCCGTCAACTGCTGCAACGGCTGTCTGGCAAGGAGAGGCGCTTT
CAGGCGTGGGTCAATCATCGCATCTCCAAAGCTATTGTCTCTAGGGCAAAGGCGACAAACAGCGCTATTGCCCTGGAAGA
CCTGACAGGGATCCGGAAAAGAGTCAATCAACAGCCGCGCAGCAAAGCCGAGCGGCGCAGGGCCAACAGTTGGGCGTTCT
ACCAACTACGTCAATTTCTGGAATACAAGGCGAGGGCTGCAGGGGTTTCTCTGATTCTTGTGCCGCCTGCTTACACGTCG
CAGACCTGCCACCGATGTTTGCACATCCATCCTGAGCAGGGCAAGTCCTACCGCAGTGGCAAGTCGTTCAAGTGTGGGCA
CTGTGGATGGGAAGGAGATGCGGATTTGAATGGTGCGAATGTGATTGCGCTTTTGGGGGCTGTCGTAAACCAGCCTAGAG
GTTCGGGCCTGTTTTGTTCTCTGGTAGAGCAGAGCAGGCCCAGGGCTACTGAAAGCCCGCTCCGTACCGCTTAG

Upstream 100 bases:

>100_bases
GCATAGCACCCGGGGATCAGCTAGAAATCGCAGGAGCCCCGCACTGTACCCGTAGGGTCGGTGTCGGGAGGAATGCGCTT
TGATGAAGTACAATGAACTT

Downstream 100 bases:

>100_bases
CGGTCGGAGCCGGGTAGTTTACCTTTCGACCTCATTTCGACCTCATTATTTTGTAGATTTTGTAGCTCGGCTGGGTTGAG
CAGAAAGAGCGCTGGGAAGC

Product: ISSoc1, transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 396

Protein sequence:

>397_residues
MSQVLTISCKLKVAQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYEIRARFGLSSNLAQQVCRRVAGSRK
VAKQKKRPVKEFKSGFVTYDARIFSFRQKDWTVSLTTVEGRERFELAIGNYQRGMLAGSNPKSATLVKRKDGSYYIQICV
EKKPPKQQDTDKVIGVDLGRTDIAHTSEGDNWNGQQLNRVRDHYSKLRAALQRKASKGTRSSRRRCRQLLQRLSGKERRF
QAWVNHRISKAIVSRAKATNSAIALEDLTGIRKRVNQQPRSKAERRRANSWAFYQLRQFLEYKARAAGVSLILVPPAYTS
QTCHRCLHIHPEQGKSYRSGKSFKCGHCGWEGDADLNGANVIALLGAVVNQPRGSGLFCSLVEQSRPRATESPLRTA

Sequences:

>Translated_397_residues
MSQVLTISCKLKVAQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYEIRARFGLSSNLAQQVCRRVAGSRK
VAKQKKRPVKEFKSGFVTYDARIFSFRQKDWTVSLTTVEGRERFELAIGNYQRGMLAGSNPKSATLVKRKDGSYYIQICV
EKKPPKQQDTDKVIGVDLGRTDIAHTSEGDNWNGQQLNRVRDHYSKLRAALQRKASKGTRSSRRRCRQLLQRLSGKERRF
QAWVNHRISKAIVSRAKATNSAIALEDLTGIRKRVNQQPRSKAERRRANSWAFYQLRQFLEYKARAAGVSLILVPPAYTS
QTCHRCLHIHPEQGKSYRSGKSFKCGHCGWEGDADLNGANVIALLGAVVNQPRGSGLFCSLVEQSRPRATESPLRTA
>Mature_396_residues
SQVLTISCKLKVAQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYEIRARFGLSSNLAQQVCRRVAGSRKV
AKQKKRPVKEFKSGFVTYDARIFSFRQKDWTVSLTTVEGRERFELAIGNYQRGMLAGSNPKSATLVKRKDGSYYIQICVE
KKPPKQQDTDKVIGVDLGRTDIAHTSEGDNWNGQQLNRVRDHYSKLRAALQRKASKGTRSSRRRCRQLLQRLSGKERRFQ
AWVNHRISKAIVSRAKATNSAIALEDLTGIRKRVNQQPRSKAERRRANSWAFYQLRQFLEYKARAAGVSLILVPPAYTSQ
TCHRCLHIHPEQGKSYRSGKSFKCGHCGWEGDADLNGANVIALLGAVVNQPRGSGLFCSLVEQSRPRATESPLRTA

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=254, Percent_Identity=27.5590551181102, Blast_Score=68, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 44744; Mature: 44613

Theoretical pI: Translated: 11.05; Mature: 11.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQVLTISCKLKVAQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYEIRAR
CCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRVAGSRKVAKQKKRPVKEFKSGFVTYDARIFSFRQKDWTVSLTTVEG
CCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHCCCEEEEHHHEEEECCCEEEEEEEECC
RERFELAIGNYQRGMLAGSNPKSATLVKRKDGSYYIQICVEKKPPKQQDTDKVIGVDLGR
CCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCEEEEECCC
TDIAHTSEGDNWNGQQLNRVRDHYSKLRAALQRKASKGTRSSRRRCRQLLQRLSGKERRF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHH
QAWVNHRISKAIVSRAKATNSAIALEDLTGIRKRVNQQPRSKAERRRANSWAFYQLRQFL
HHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHH
EYKARAAGVSLILVPPAYTSQTCHRCLHIHPEQGKSYRSGKSFKCGHCGWEGDADLNGAN
HHHHHHCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
VIALLGAVVNQPRGSGLFCSLVEQSRPRATESPLRTA
HHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SQVLTISCKLKVAQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYEIRAR
CCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRVAGSRKVAKQKKRPVKEFKSGFVTYDARIFSFRQKDWTVSLTTVEG
CCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHCCCEEEEHHHEEEECCCEEEEEEEECC
RERFELAIGNYQRGMLAGSNPKSATLVKRKDGSYYIQICVEKKPPKQQDTDKVIGVDLGR
CCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCEEEEECCC
TDIAHTSEGDNWNGQQLNRVRDHYSKLRAALQRKASKGTRSSRRRCRQLLQRLSGKERRF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHH
QAWVNHRISKAIVSRAKATNSAIALEDLTGIRKRVNQQPRSKAERRRANSWAFYQLRQFL
HHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHH
EYKARAAGVSLILVPPAYTSQTCHRCLHIHPEQGKSYRSGKSFKCGHCGWEGDADLNGAN
HHHHHHCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
VIALLGAVVNQPRGSGLFCSLVEQSRPRATESPLRTA
HHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]