| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608013
Identifier: 86608013
GI number: 86608013
Start: 535600
End: 536703
Strand: Reverse
Name: 86608013
Synonym: CYB_0520
Alternate gene names: NA
Gene position: 536703-535600 (Counterclockwise)
Preceding gene: 86608015
Following gene: 86608011
Centisome position: 17.62
GC content: 60.33
Gene sequence:
>1104_bases ATGAGTCAGTATCTGCCGGAACCTGCTGCTGTGGAGGAGGATCCCAGCTTGTTGGTAGAGCGGCTGCGCCGCAAAGAGGG CCGGTGGCTGGATTGGGCCAAGGCCTGTCAAGCTTTGCAACGACAGAAAATGACTCCCCAGGCCATCTTCGAGGCGACGG GGTTTGAGCCCATTCACCAAAACCAGATCATCGTTGCGGCCCAAGTTTACGAAGGGATAGCCAAAGCAGGAGCCAGCCCA GCAGTTCTGGAGCATTTTGCCCACAAAGGTAGCGATATCCTCTACGAGTTGCGCATTCTCTCTCCACAGGATCGGGTTCG GGTGGCGGAATTTATCTTCAGTCGCCATTTGCATGCCGCTGATGCTCATGAGATCGCCCGCGCCGTGAAAAATTATGCCC AGCTCCAACAGCTTCCGGAAGGGTTTACGGATCACCCCGGCGATGCGGTAGCCTATCAAGCCTGGCGGACGGCCCAGCAA ACCCGCGATCTGCAGGAGCGAACTCGCGCTATCGGTCGAGCATTTCAGTATGTCCACAGTGATACAGCCCGCCGACAGGT GGAGCAGCTCTTGTCCACGATTGCCACCAGCTCCCGCCCCCAACGCAGCGTTTTGCCCAAGCTGTCCGTGTTTCGCTTGG AAGAAGATCTGCCGCGACTGCTGCCGGTGGCCGGATCCCTGCCTCTTGCAACTGCCGCCTGGGAAGGGATCCCCCCCAGC GAGCCGCAAGGGCCCTTTGGCTGGGTCAACAGCCCGGCGGAGCAGACTTGGATGGCCTTGCCTGCTTGGCCGGTGATTCA AAAGGCCGGGGATCCGGTGATCCTTCAGGTGGAAAACCGGCTTTTGGGATCCCTGTTGGGTTTGCCGGTGCCTGCCGGTG AAGAACAGGATCCGGTTTTGCTGGTGGTCGATCGCGCCGCTCGGGTTTGGGAGGGAGCTCAGATGGCGGGATTTTTCCTG GTGGATCGGGCCGGATCCCTGGCGGTGGAGTGGATAGAAGACTCGCCCTCCTCTCCCCTGTTGGGCCAGGTGCTGATGGC CGTGCGCCCCCCGCGGGTTTTCGATGAGGTGCTGGCTCAGGATCCCTGGCAGTTGGAAGAATAG
Upstream 100 bases:
>100_bases AGATCAAGTTTGAAGATCAAGTTTGGCCAGATGCCCGGCCAGCTCTGCTGGGCTGTGGACCAGGGGAGTGGTGATCTGTC CAGCCTGTTGGAGAACAAGC
Downstream 100 bases:
>100_bases GCGTTGGGATCCCGCCGTTGTAGCCATTCGTGCTAGTGGTGCAGAGCACCGCGCCTGGACTCGCCCCCATGGCCTCACCC ATGGCCTCAATTGAGCAAGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 367; Mature: 366
Protein sequence:
>367_residues MSQYLPEPAAVEEDPSLLVERLRRKEGRWLDWAKACQALQRQKMTPQAIFEATGFEPIHQNQIIVAAQVYEGIAKAGASP AVLEHFAHKGSDILYELRILSPQDRVRVAEFIFSRHLHAADAHEIARAVKNYAQLQQLPEGFTDHPGDAVAYQAWRTAQQ TRDLQERTRAIGRAFQYVHSDTARRQVEQLLSTIATSSRPQRSVLPKLSVFRLEEDLPRLLPVAGSLPLATAAWEGIPPS EPQGPFGWVNSPAEQTWMALPAWPVIQKAGDPVILQVENRLLGSLLGLPVPAGEEQDPVLLVVDRAARVWEGAQMAGFFL VDRAGSLAVEWIEDSPSSPLLGQVLMAVRPPRVFDEVLAQDPWQLEE
Sequences:
>Translated_367_residues MSQYLPEPAAVEEDPSLLVERLRRKEGRWLDWAKACQALQRQKMTPQAIFEATGFEPIHQNQIIVAAQVYEGIAKAGASP AVLEHFAHKGSDILYELRILSPQDRVRVAEFIFSRHLHAADAHEIARAVKNYAQLQQLPEGFTDHPGDAVAYQAWRTAQQ TRDLQERTRAIGRAFQYVHSDTARRQVEQLLSTIATSSRPQRSVLPKLSVFRLEEDLPRLLPVAGSLPLATAAWEGIPPS EPQGPFGWVNSPAEQTWMALPAWPVIQKAGDPVILQVENRLLGSLLGLPVPAGEEQDPVLLVVDRAARVWEGAQMAGFFL VDRAGSLAVEWIEDSPSSPLLGQVLMAVRPPRVFDEVLAQDPWQLEE >Mature_366_residues SQYLPEPAAVEEDPSLLVERLRRKEGRWLDWAKACQALQRQKMTPQAIFEATGFEPIHQNQIIVAAQVYEGIAKAGASPA VLEHFAHKGSDILYELRILSPQDRVRVAEFIFSRHLHAADAHEIARAVKNYAQLQQLPEGFTDHPGDAVAYQAWRTAQQT RDLQERTRAIGRAFQYVHSDTARRQVEQLLSTIATSSRPQRSVLPKLSVFRLEEDLPRLLPVAGSLPLATAAWEGIPPSE PQGPFGWVNSPAEQTWMALPAWPVIQKAGDPVILQVENRLLGSLLGLPVPAGEEQDPVLLVVDRAARVWEGAQMAGFFLV DRAGSLAVEWIEDSPSSPLLGQVLMAVRPPRVFDEVLAQDPWQLEE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40874; Mature: 40743
Theoretical pI: Translated: 5.14; Mature: 5.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQYLPEPAAVEEDPSLLVERLRRKEGRWLDWAKACQALQRQKMTPQAIFEATGFEPIHQ CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCC NQIIVAAQVYEGIAKAGASPAVLEHFAHKGSDILYELRILSPQDRVRVAEFIFSRHLHAA CCEEEHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCC DAHEIARAVKNYAQLQQLPEGFTDHPGDAVAYQAWRTAQQTRDLQERTRAIGRAFQYVHS HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DTARRQVEQLLSTIATSSRPQRSVLPKLSVFRLEEDLPRLLPVAGSLPLATAAWEGIPPS HHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCC EPQGPFGWVNSPAEQTWMALPAWPVIQKAGDPVILQVENRLLGSLLGLPVPAGEEQDPVL CCCCCCCCCCCCHHHHEEECCCCHHHHHCCCCEEEEEHHHHHHHHHCCCCCCCCCCCCEE LVVDRAARVWEGAQMAGFFLVDRAGSLAVEWIEDSPSSPLLGQVLMAVRPPRVFDEVLAQ EEECCHHHHHCCCHHHHHHEEECCCCEEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHCC DPWQLEE CCCCCCC >Mature Secondary Structure SQYLPEPAAVEEDPSLLVERLRRKEGRWLDWAKACQALQRQKMTPQAIFEATGFEPIHQ CCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCC NQIIVAAQVYEGIAKAGASPAVLEHFAHKGSDILYELRILSPQDRVRVAEFIFSRHLHAA CCEEEHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCC DAHEIARAVKNYAQLQQLPEGFTDHPGDAVAYQAWRTAQQTRDLQERTRAIGRAFQYVHS HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DTARRQVEQLLSTIATSSRPQRSVLPKLSVFRLEEDLPRLLPVAGSLPLATAAWEGIPPS HHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCC EPQGPFGWVNSPAEQTWMALPAWPVIQKAGDPVILQVENRLLGSLLGLPVPAGEEQDPVL CCCCCCCCCCCCHHHHEEECCCCHHHHHCCCCEEEEEHHHHHHHHHCCCCCCCCCCCCEE LVVDRAARVWEGAQMAGFFLVDRAGSLAVEWIEDSPSSPLLGQVLMAVRPPRVFDEVLAQ EEECCHHHHHCCCHHHHHHEEECCCCEEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHCC DPWQLEE CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA