| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
Click here to switch to the map view.
The map label for this gene is 86608000
Identifier: 86608000
GI number: 86608000
Start: 518074
End: 518244
Strand: Direct
Name: 86608000
Synonym: CYB_0506
Alternate gene names: NA
Gene position: 518074-518244 (Clockwise)
Preceding gene: 86607999
Following gene: 86608002
Centisome position: 17.0
GC content: 50.29
Gene sequence:
>171_bases ATGTCACCCGTTGATGGAGCTAGAACCATGGAAAACCAAGAAGCTAAGTTTGGCTTTACCACCTTCGCCGAAAAATGGAA TGGCCGTTTGGCAATGTTGGGCTTTGTGATTGGCGTTGCGACCGAGTTGCTGACCGGCCAAGGGATCCTCTCTCAAATCG GCCTGATGTAA
Upstream 100 bases:
>100_bases TCATCGACGCCCTCTGGACAACCGTGAAAAGCAGCTAGGGATCCCTTGTTAGCTCTCGACATAAAACTTGACACTTTTTA ATATCTGAGCCACATTAAAG
Downstream 100 bases:
>100_bases TCCCGGTGGGCCTACGACACTGCTGTAGATCCTTGCTTGCCTGGCTGTAGTTTCCACCCTCTGCAAAGCAGCCAGGCTTT CGCATTGCCCTCGATTCTGG
Product: CAB/ELIP/HLIP family protein
Products: NA
Alternate protein names: High Light Inducible Protein; Lhc-Like; CAB/ELIP/HLIP Superfamily Protein; Ferrochelatase; High Light Inducible Polypeptide HliC; Conserved Domain Protein
Number of amino acids: Translated: 56; Mature: 55
Protein sequence:
>56_residues MSPVDGARTMENQEAKFGFTTFAEKWNGRLAMLGFVIGVATELLTGQGILSQIGLM
Sequences:
>Translated_56_residues MSPVDGARTMENQEAKFGFTTFAEKWNGRLAMLGFVIGVATELLTGQGILSQIGLM >Mature_55_residues SPVDGARTMENQEAKFGFTTFAEKWNGRLAMLGFVIGVATELLTGQGILSQIGLM
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 6035; Mature: 5904
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 7.1 %Met (Translated Protein) 7.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 5.5 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPVDGARTMENQEAKFGFTTFAEKWNGRLAMLGFVIGVATELLTGQGILSQIGLM CCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHCCC >Mature Secondary Structure SPVDGARTMENQEAKFGFTTFAEKWNGRLAMLGFVIGVATELLTGQGILSQIGLM CCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA