Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

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The map label for this gene is 86607942

Identifier: 86607942

GI number: 86607942

Start: 455204

End: 455479

Strand: Reverse

Name: 86607942

Synonym: CYB_0447

Alternate gene names: NA

Gene position: 455479-455204 (Counterclockwise)

Preceding gene: 86607943

Following gene: 86607941

Centisome position: 14.95

GC content: 60.14

Gene sequence:

>276_bases
ATGCCAGACTACAAGGCTCTCGCCCATCTTTTGATCGAACCGCTGCTCAGCAGCGCCTCTCTTCAAATGGATGTGGAAAC
CACCTGTGGCGGGCGAAAGGTATGGCTGCGGCTGGCCTTTGACCCGAAGGATCGGGGGCGGGTATTCGGGCGGGGCGGGC
GCACCCTGCAAGCGATTCGACAGGTGATGATGGCCGCAGCTCAGTTGGCAGGTCAATCTCTGTACATCGATATCTACGGA
GAGGCGGGAGAGCGGAATCGGGAGGAGCGGGAATGA

Upstream 100 bases:

>100_bases
GAAGCTGAAGTTGAAAAGCCTCAGGTTGAGGAAGCGGTTGAGGCCTAGGGTCGGCTAAGCTTGGCTTGGCCAGTTGTTCC
CTCCTGTCGTCTAGCTCTCT

Downstream 100 bases:

>100_bases
GCCAAATTCTCACCTTTCTGGGCAAGGGGGGCACAGGTCGGAGCACCTTGGCCGTGGCGGCAGCTCGGGCCGCAGCCCAG
CAGGGGCGGCGGGTGCTGTT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 91; Mature: 90

Protein sequence:

>91_residues
MPDYKALAHLLIEPLLSSASLQMDVETTCGGRKVWLRLAFDPKDRGRVFGRGGRTLQAIRQVMMAAAQLAGQSLYIDIYG
EAGERNREERE

Sequences:

>Translated_91_residues
MPDYKALAHLLIEPLLSSASLQMDVETTCGGRKVWLRLAFDPKDRGRVFGRGGRTLQAIRQVMMAAAQLAGQSLYIDIYG
EAGERNREERE
>Mature_90_residues
PDYKALAHLLIEPLLSSASLQMDVETTCGGRKVWLRLAFDPKDRGRVFGRGGRTLQAIRQVMMAAAQLAGQSLYIDIYGE
AGERNREERE

Specific function: Unknown

COG id: COG1837

COG function: function code R; Predicted RNA-binding protein (contains KH domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10195; Mature: 10064

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDYKALAHLLIEPLLSSASLQMDVETTCGGRKVWLRLAFDPKDRGRVFGRGGRTLQAIR
CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEEEECCCCCCCEECCCCCHHHHHH
QVMMAAAQLAGQSLYIDIYGEAGERNREERE
HHHHHHHHHCCCEEEEEEECCCCCCCCCCCC
>Mature Secondary Structure 
PDYKALAHLLIEPLLSSASLQMDVETTCGGRKVWLRLAFDPKDRGRVFGRGGRTLQAIR
CCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEEEECCCCCCCEECCCCCHHHHHH
QVMMAAAQLAGQSLYIDIYGEAGERNREERE
HHHHHHHHHCCCEEEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA