| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
Click here to switch to the map view.
The map label for this gene is insQ [H]
Identifier: 86607850
GI number: 86607850
Start: 369859
End: 371220
Strand: Direct
Name: insQ [H]
Synonym: CYB_0353
Alternate gene names: 86607850
Gene position: 369859-371220 (Clockwise)
Preceding gene: 86607849
Following gene: 86607852
Centisome position: 12.14
GC content: 62.04
Gene sequence:
>1362_bases GTGCAACGACTTCAAGCCTTCAAGTACGAATTGCTGCCCAACAGCCAGCAGGAACGGCAGATGCGCCGCTTTGCTGGCTC CTGCCGGTTCGTCTACAACAAAGCACTGGCGTTGCAGAAGGAGCGTCACGAGCAAGGCCAGAAAAAGCTAGGCTATGCGG GCTTGTGCCAGCTGCTCACCGCGTGGCGCCACAGCGCAGATACGGCGTGGCTGGCGGATGCGCCGGTGCATCCGCTGCAA CAGGCGCTCCAGGATTTGGAGCGAGCCCACAGCCACTTCTTCGCCCAGCGCGCCGGCTTCCCGAAGTTCAAGAAAAAAGG CCGGTCGGACAGTTTCCGTTATCCCGACCCCAAGCAAATCCAGCTGGACCAGGCCAACAGCCGCATCTTTCTGCCCAAAC TTGGCTGGCTGCGTTATCGCAACAGCCGCGACGTGGTGGGCAAGGTCAAGAACGTCACCGTATCCAAGCACGCTGGCAAG TGGTTCGTGTCGATCCAGACCGAGCAGGAGGTTAATTGGCCTATTCCGCAGGGGGGCGCAGTGGGCATGGACATGGGCAT TGCCCGCTTGGCTACCCTCTCGGACGGCACGTTCTACGCGCCCCTCAACAGCTTCAAGCGGCACGAGGCGCGCTTGCGCA AGGCCCAGCAAGCGCTCTCCCGCAAAGTCAAGTTCAGCAACAACTGGAAGAAGGCAAAAGCCCGCCTCCAGCGTATTCAT TCTCAGATGGCCAACGCCCGCCGCGACTTCCTGCACAAGGTCTCGACCGCGATTAGCAAAAGCCAGGCAATCGTGTGCAT CGAGGACTTGCGGGTGCGGAATATGTCCAAGTTGGCGGCAGGGACGGCAGATGCTCCTGGGAAGAACGTCCGCGCCAAGT CAGCGTTAAACAAAGCCATTCTCGACCAGGGGTGGTATGAGTTCCGCTGCATGCTGGAGTACAAGCTGGCCTGGAAAGGC GGCAGGCTCATTGTCGTGCCGCCGCAGAACCCGAGCCGCACCTGTCCATGTTGCGGCCATGTTTCATCAGACAACCGCCA GACCCAAGCCTGGTTCGAGTGCGTGGCGTGCGGCTATGAGAATAACGCCGATCGCGGCAGCGGGCCGGAGGCCTTTCGCG GCAGCGGGCCGGAGGCCTTTCGCGGCAGCGGGCCGGAGGCCTTTCTGGTCGGTGCCATCAACATCCTTGCTCGCGGGATA CAGCTGTTGCGAGACGAAGGGCAGGACACGGCCGACGCTGCGGTCGGGATGCGGGTGGATCAACCACCCGTGTCAGCCCG GATGGCCTGTGGATCGAACTGCACGGGCGGTCGGAAGCAGGAACCCGCCGAGACGACTGCGCAAGGAGCCATCCATGCGT AG
Upstream 100 bases:
>100_bases GGAAGGATAGCGCCGACCATAGCCGACGCCCTTTAAAAACGCAGTGCCGGCCATGTGAATATCGTTGTCATCACGCATAG GTCAAGAATACGATTGAGCG
Downstream 100 bases:
>100_bases CGTGGTAGGAATCTCCGGCCTAAAGGCCGGGGAGGATGTCAATTTCCCAGTTTCACCCTCCTCTCTGGCTCAGCTTGGAG CCAATGGCCTCATCGGCAAA
Product: ISSoc9, transposase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 453; Mature: 453
Protein sequence:
>453_residues MQRLQAFKYELLPNSQQERQMRRFAGSCRFVYNKALALQKERHEQGQKKLGYAGLCQLLTAWRHSADTAWLADAPVHPLQ QALQDLERAHSHFFAQRAGFPKFKKKGRSDSFRYPDPKQIQLDQANSRIFLPKLGWLRYRNSRDVVGKVKNVTVSKHAGK WFVSIQTEQEVNWPIPQGGAVGMDMGIARLATLSDGTFYAPLNSFKRHEARLRKAQQALSRKVKFSNNWKKAKARLQRIH SQMANARRDFLHKVSTAISKSQAIVCIEDLRVRNMSKLAAGTADAPGKNVRAKSALNKAILDQGWYEFRCMLEYKLAWKG GRLIVVPPQNPSRTCPCCGHVSSDNRQTQAWFECVACGYENNADRGSGPEAFRGSGPEAFRGSGPEAFLVGAINILARGI QLLRDEGQDTADAAVGMRVDQPPVSARMACGSNCTGGRKQEPAETTAQGAIHA
Sequences:
>Translated_453_residues MQRLQAFKYELLPNSQQERQMRRFAGSCRFVYNKALALQKERHEQGQKKLGYAGLCQLLTAWRHSADTAWLADAPVHPLQ QALQDLERAHSHFFAQRAGFPKFKKKGRSDSFRYPDPKQIQLDQANSRIFLPKLGWLRYRNSRDVVGKVKNVTVSKHAGK WFVSIQTEQEVNWPIPQGGAVGMDMGIARLATLSDGTFYAPLNSFKRHEARLRKAQQALSRKVKFSNNWKKAKARLQRIH SQMANARRDFLHKVSTAISKSQAIVCIEDLRVRNMSKLAAGTADAPGKNVRAKSALNKAILDQGWYEFRCMLEYKLAWKG GRLIVVPPQNPSRTCPCCGHVSSDNRQTQAWFECVACGYENNADRGSGPEAFRGSGPEAFRGSGPEAFLVGAINILARGI QLLRDEGQDTADAAVGMRVDQPPVSARMACGSNCTGGRKQEPAETTAQGAIHA >Mature_453_residues MQRLQAFKYELLPNSQQERQMRRFAGSCRFVYNKALALQKERHEQGQKKLGYAGLCQLLTAWRHSADTAWLADAPVHPLQ QALQDLERAHSHFFAQRAGFPKFKKKGRSDSFRYPDPKQIQLDQANSRIFLPKLGWLRYRNSRDVVGKVKNVTVSKHAGK WFVSIQTEQEVNWPIPQGGAVGMDMGIARLATLSDGTFYAPLNSFKRHEARLRKAQQALSRKVKFSNNWKKAKARLQRIH SQMANARRDFLHKVSTAISKSQAIVCIEDLRVRNMSKLAAGTADAPGKNVRAKSALNKAILDQGWYEFRCMLEYKLAWKG GRLIVVPPQNPSRTCPCCGHVSSDNRQTQAWFECVACGYENNADRGSGPEAFRGSGPEAFRGSGPEAFLVGAINILARGI QLLRDEGQDTADAAVGMRVDQPPVSARMACGSNCTGGRKQEPAETTAQGAIHA
Specific function: Required for the transposition of the insertion element (Potential) [H]
COG id: COG0675
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transposase 35 family [H]
Homologues:
Organism=Escherichia coli, GI288549314, Length=427, Percent_Identity=51.288056206089, Blast_Score=441, Evalue=1e-125,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001959 - InterPro: IPR010095 - InterPro: IPR021027 [H]
Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]
EC number: NA
Molecular weight: Translated: 50550; Mature: 50550
Theoretical pI: Translated: 10.64; Mature: 10.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQRLQAFKYELLPNSQQERQMRRFAGSCRFVYNKALALQKERHEQGQKKLGYAGLCQLLT CCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH AWRHSADTAWLADAPVHPLQQALQDLERAHSHFFAQRAGFPKFKKKGRSDSFRYPDPKQI HHHCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCEE QLDQANSRIFLPKLGWLRYRNSRDVVGKVKNVTVSKHAGKWFVSIQTEQEVNWPIPQGGA EEECCCCEEEEECCCHHEECCCCHHHHHHHCEEEECCCCEEEEEEECCCCCCCCCCCCCC VGMDMGIARLATLSDGTFYAPLNSFKRHEARLRKAQQALSRKVKFSNNWKKAKARLQRIH CCHHHHHHHHHEECCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH SQMANARRDFLHKVSTAISKSQAIVCIEDLRVRNMSKLAAGTADAPGKNVRAKSALNKAI HHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH LDQGWYEFRCMLEYKLAWKGGRLIVVPPQNPSRTCPCCGHVSSDNRQTQAWFECVACGYE HHCCHHHEEEEEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC NNADRGSGPEAFRGSGPEAFRGSGPEAFLVGAINILARGIQLLRDEGQDTADAAVGMRVD CCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCC QPPVSARMACGSNCTGGRKQEPAETTAQGAIHA CCCCHHHHHCCCCCCCCCCCCCHHHHHCCCCCC >Mature Secondary Structure MQRLQAFKYELLPNSQQERQMRRFAGSCRFVYNKALALQKERHEQGQKKLGYAGLCQLLT CCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH AWRHSADTAWLADAPVHPLQQALQDLERAHSHFFAQRAGFPKFKKKGRSDSFRYPDPKQI HHHCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCEE QLDQANSRIFLPKLGWLRYRNSRDVVGKVKNVTVSKHAGKWFVSIQTEQEVNWPIPQGGA EEECCCCEEEEECCCHHEECCCCHHHHHHHCEEEECCCCEEEEEEECCCCCCCCCCCCCC VGMDMGIARLATLSDGTFYAPLNSFKRHEARLRKAQQALSRKVKFSNNWKKAKARLQRIH CCHHHHHHHHHEECCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH SQMANARRDFLHKVSTAISKSQAIVCIEDLRVRNMSKLAAGTADAPGKNVRAKSALNKAI HHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH LDQGWYEFRCMLEYKLAWKGGRLIVVPPQNPSRTCPCCGHVSSDNRQTQAWFECVACGYE HHCCHHHEEEEEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC NNADRGSGPEAFRGSGPEAFRGSGPEAFLVGAINILARGIQLLRDEGQDTADAAVGMRVD CCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCC QPPVSARMACGSNCTGGRKQEPAETTAQGAIHA CCCCHHHHHCCCCCCCCCCCCCHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503 [H]