The gene/protein map for NC_007776 is currently unavailable.
Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

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The map label for this gene is gpsA

Identifier: 86607847

GI number: 86607847

Start: 368129

End: 369076

Strand: Direct

Name: gpsA

Synonym: CYB_0350

Alternate gene names: 86607847

Gene position: 368129-369076 (Clockwise)

Preceding gene: 86607844

Following gene: 86607849

Centisome position: 12.08

GC content: 63.19

Gene sequence:

>948_bases
ATGAACACTAGCGCAGAAGGCCAAAGCCCAACATCCCCGCAAAGCGTTGCCATTTTGGGAGCCGGGGCTTGGGGAAGTAC
CCTGGCGATGCTGGCTCAGGGGCAAGGGCACCGGGTGCGGGTTTGGAATCGCCGCAAGGGCCTGGATTTGGCAGAAGTGC
TCCAGGGATCCCAAATCCTCATCTCAGCCGTCTCTATGGCGGGGGTACGCCCTGTGGTGGAAGCGGTGCGCCAGGTGGGG
ATCCCACCGCAGGCAATTTTGGTCTCGGCCACCAAAGGGTTGGATCCACTGCAGCTTCTGACCCCTACCCAAATCTGGGG
GGCCACTTTCCCGGAGCAGCCTCTGGTAGTGCTTTCGGGGCCTAATCTTTCGGCGGAGATCCGCCAAGGCTTGCCGGCAG
CGGCAGTGGTGGCCAGCCGGGATCCCTGGGCCGCTGTGCAGGTGCAGTATGCCCTTTCCTCGGAGCGGTTCCGCCTCTAT
ACCAGCAGCGATCCGCTGGGAGTGGAGCTAGGCGGCACCCTGAAAAATGTTATCGCCATCGCTGTTGGCGTGTGTGATGG
CTTGCAACTGGGGGCCAATGCCCGTGCGGCTCTGGTTACCCGCGGCCTGGCAGAGATGATCCGGGTGGGATCCAAGCTGG
GGGCACGGGCAGAAACCTTCAACGGCCTGTCGGGGTTGGGGGATCTGCTGGCCACCTGCCACAGCCGCTTGAGCCGCAAC
TACCGAGTGGGCTACGGGCTAGGCCAGGGCCAACCCTTGTCGCAGATTTTGGCGGAGATCGAGGGCACCGCCGAAGGGGT
TTACACCGCTCCCGTCGTGGTCGAGATCGCTGCCCAGCACGGCATTCAGGTGCCCATCACCCAGGAAGTGCATCTGTTGT
TGCAAGGGCAGACCACCCCCACCGCCGCCCTCACCCGCCTGATGGAACGTCAACTGACTTCGGAATAG

Upstream 100 bases:

>100_bases
TACTAACCTTTGTCGCCGGTCTTCCCTTTGCCGGCGCAGGCTTTTTGAGAGGCATCCTACGAAGAAAGCTTAAGAGAAAG
TCTGCGGGTGAACAGATTAG

Downstream 100 bases:

>100_bases
GCTGCCTTCACTTCTCCCAAAGGAGGAGGGGGGTTTCTGGCATAACCGCAAATCTGCGGATGAGGAAAGTTGTTCCGCAC
TCTATCAGGATTTTTGCAGA

Product: NAD(P)H-dependent glycerol-3-phosphate dehydrogenase

Products: NA

Alternate protein names: NAD(P)H-dependent glycerol-3-phosphate dehydrogenase

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MNTSAEGQSPTSPQSVAILGAGAWGSTLAMLAQGQGHRVRVWNRRKGLDLAEVLQGSQILISAVSMAGVRPVVEAVRQVG
IPPQAILVSATKGLDPLQLLTPTQIWGATFPEQPLVVLSGPNLSAEIRQGLPAAAVVASRDPWAAVQVQYALSSERFRLY
TSSDPLGVELGGTLKNVIAIAVGVCDGLQLGANARAALVTRGLAEMIRVGSKLGARAETFNGLSGLGDLLATCHSRLSRN
YRVGYGLGQGQPLSQILAEIEGTAEGVYTAPVVVEIAAQHGIQVPITQEVHLLLQGQTTPTAALTRLMERQLTSE

Sequences:

>Translated_315_residues
MNTSAEGQSPTSPQSVAILGAGAWGSTLAMLAQGQGHRVRVWNRRKGLDLAEVLQGSQILISAVSMAGVRPVVEAVRQVG
IPPQAILVSATKGLDPLQLLTPTQIWGATFPEQPLVVLSGPNLSAEIRQGLPAAAVVASRDPWAAVQVQYALSSERFRLY
TSSDPLGVELGGTLKNVIAIAVGVCDGLQLGANARAALVTRGLAEMIRVGSKLGARAETFNGLSGLGDLLATCHSRLSRN
YRVGYGLGQGQPLSQILAEIEGTAEGVYTAPVVVEIAAQHGIQVPITQEVHLLLQGQTTPTAALTRLMERQLTSE
>Mature_315_residues
MNTSAEGQSPTSPQSVAILGAGAWGSTLAMLAQGQGHRVRVWNRRKGLDLAEVLQGSQILISAVSMAGVRPVVEAVRQVG
IPPQAILVSATKGLDPLQLLTPTQIWGATFPEQPLVVLSGPNLSAEIRQGLPAAAVVASRDPWAAVQVQYALSSERFRLY
TSSDPLGVELGGTLKNVIAIAVGVCDGLQLGANARAALVTRGLAEMIRVGSKLGARAETFNGLSGLGDLLATCHSRLSRN
YRVGYGLGQGQPLSQILAEIEGTAEGVYTAPVVVEIAAQHGIQVPITQEVHLLLQGQTTPTAALTRLMERQLTSE

Specific function: De novo phospholipid biosynthesis; glycerol-3 phosphate formation. [C]

COG id: COG0240

COG function: function code C; Glycerol-3-phosphate dehydrogenase

Gene ontology:

Cell location: Cytoplasm (Probable)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family

Homologues:

Organism=Homo sapiens, GI24307999, Length=333, Percent_Identity=24.9249249249249, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI33695088, Length=292, Percent_Identity=23.972602739726, Blast_Score=82, Evalue=8e-16,
Organism=Escherichia coli, GI1790037, Length=322, Percent_Identity=37.5776397515528, Blast_Score=176, Evalue=1e-45,
Organism=Caenorhabditis elegans, GI32564399, Length=343, Percent_Identity=25.9475218658892, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI32564403, Length=349, Percent_Identity=26.0744985673352, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI193210136, Length=349, Percent_Identity=26.0744985673352, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI193210134, Length=312, Percent_Identity=26.2820512820513, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17507425, Length=350, Percent_Identity=25.1428571428571, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI22026922, Length=284, Percent_Identity=25, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI17136202, Length=336, Percent_Identity=24.4047619047619, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI17136204, Length=337, Percent_Identity=24.3323442136499, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI17136200, Length=337, Percent_Identity=24.3323442136499, Blast_Score=80, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): GPDA_SYNJB (Q2JPE4)

Other databases:

- EMBL:   CP000240
- RefSeq:   YP_476609.1
- ProteinModelPortal:   Q2JPE4
- SMR:   Q2JPE4
- STRING:   Q2JPE4
- GeneID:   3901638
- GenomeReviews:   CP000240_GR
- KEGG:   cyb:CYB_0350
- TIGR:   CYB_0350
- eggNOG:   COG0240
- HOGENOM:   HBG586392
- OMA:   NYRVGYG
- ProtClustDB:   PRK14619
- BioCyc:   SSP321332:CYB_0350-MONOMER
- HAMAP:   MF_00394
- InterPro:   IPR008927
- InterPro:   IPR013328
- InterPro:   IPR006168
- InterPro:   IPR006109
- InterPro:   IPR011128
- InterPro:   IPR016040
- Gene3D:   G3DSA:3.40.50.720
- Gene3D:   G3DSA:1.10.1040.10
- PANTHER:   PTHR11728
- PIRSF:   PIRSF000114

Pfam domain/function: PF07479 NAD_Gly3P_dh_C; PF01210 NAD_Gly3P_dh_N; SSF48179 6DGDH_C_like

EC number: =1.1.1.94

Molecular weight: Translated: 32969; Mature: 32969

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: PS00957 NAD_G3PDH

Important sites: ACT_SITE 175-175 BINDING 92-92 BINDING 92-92 BINDING 124-124 BINDING 239-239 BINDING 265-265

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MNTSAEGQSPTSPQSVAILGAGAWGSTLAMLAQGQGHRVRVWNRRKGLDLAEVLQGSQIL
CCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHCCCHHH
ISAVSMAGVRPVVEAVRQVGIPPQAILVSATKGLDPLQLLTPTQIWGATFPEQPLVVLSG
HHHHHHHCCHHHHHHHHHCCCCCHHEEEEECCCCCCHHHCCCHHHHCCCCCCCCEEEEEC
PNLSAEIRQGLPAAAVVASRDPWAAVQVQYALSSERFRLYTSSDPLGVELGGTLKNVIAI
CCCHHHHHCCCCCEEEEECCCCCEEEEEEEEECCCEEEEEECCCCCCEEECHHHHHHHHH
AVGVCDGLQLGANARAALVTRGLAEMIRVGSKLGARAETFNGLSGLGDLLATCHSRLSRN
HHHHHCCCEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHCCC
YRVGYGLGQGQPLSQILAEIEGTAEGVYTAPVVVEIAAQHGIQVPITQEVHLLLQGQTTP
EEEEECCCCCCCHHHHHHHHCCCCCCEEECHHHEEEHHHCCCCCCCCCCEEEEEECCCCH
TAALTRLMERQLTSE
HHHHHHHHHHHHCCC
>Mature Secondary Structure
MNTSAEGQSPTSPQSVAILGAGAWGSTLAMLAQGQGHRVRVWNRRKGLDLAEVLQGSQIL
CCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHCCCHHH
ISAVSMAGVRPVVEAVRQVGIPPQAILVSATKGLDPLQLLTPTQIWGATFPEQPLVVLSG
HHHHHHHCCHHHHHHHHHCCCCCHHEEEEECCCCCCHHHCCCHHHHCCCCCCCCEEEEEC
PNLSAEIRQGLPAAAVVASRDPWAAVQVQYALSSERFRLYTSSDPLGVELGGTLKNVIAI
CCCHHHHHCCCCCEEEEECCCCCEEEEEEEEECCCEEEEEECCCCCCEEECHHHHHHHHH
AVGVCDGLQLGANARAALVTRGLAEMIRVGSKLGARAETFNGLSGLGDLLATCHSRLSRN
HHHHHCCCEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHCCC
YRVGYGLGQGQPLSQILAEIEGTAEGVYTAPVVVEIAAQHGIQVPITQEVHLLLQGQTTP
EEEEECCCCCCCHHHHHHHHCCCCCCEEECHHHEEEHHHCCCCCCCCCCEEEEEECCCCH
TAALTRLMERQLTSE
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA