| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86607805
Identifier: 86607805
GI number: 86607805
Start: 319737
End: 321023
Strand: Reverse
Name: 86607805
Synonym: CYB_0306
Alternate gene names: NA
Gene position: 321023-319737 (Counterclockwise)
Preceding gene: 86607806
Following gene: 86607804
Centisome position: 10.54
GC content: 59.83
Gene sequence:
>1287_bases ATGAACAGGAAGCGACCGCTGGAGAGGGTTGTCTCTCTAGGGCTGGCTTTTGCCAGCTCGGCTCTTTTGGGTGCCTGCGG CGAGGATCCTGCTCCTTGGCTCCGCCAGTTTGGAACCCCTAGCTCCGACGAGGCCCACTCCATCGCTGTAGATGAGAGGG GAAACGCCTGGGTGGTGGGAGTTACCCACGGAACTCTTCCCAAGCAGGCCGGGGCAGGTGGGGGAGATGCCTTTGTGCGC AAGTACAACGCCCAAGGTAAGGAACTCTGGACCCGCCAGTTTGGAACTTCCAGTCTTGACGAAGCGCTAGCCGTAGCGGT GGACAGGTGGGGAAACGCCTGGGTGGCAGGGGTTACCTACAGGACTTTCCCCCACCAGGTCAGTGCCGGGGGGAAGGAAG CTTTCGTGCGCAGGTACAATCCCCAGGGCAGGGAACTCTGGACTCGTCGGTTCGGCAGTGGGGAGTTGGACGGGGTCACG GCTCTTGCCGTGAATGCAGAGGGCAACGTCTGGGTGGCGGGGGATGCCGTTCGCGGTAGCGGGACGGAGTCCTTAGCCCC TTCCGGCCAATCCAGGGGTAAAAGCTTTGTGCACAAGTATGACTCCAATGGCAACCTGCTCTGGACTCGAGAGCTCGAGC TCCATCGGCGGGCCGGTGCCCTGGCTGCCGACGAGGAGGGAAATGTCTGGGTGGTGGGATCCATTCAAGAAAGCCTTCCG GGACAGTCGGTCGCGTCAGCGGGACGGAGTCCCAGAGCGGGAGGCTTTGTGCGCAAATATGATCCCGAGGGCAACCAGCT CTGGCTTCGCCAGTTTTCAGGCGGGAGGGGTGACGGGGCTTTTTCCATCGCTGTAGGTGAGATGGGGAATGTCTGGATAG CGGGATTCATCCAAGAAGCTCCCACCGGCCAGGCAGGGGAGTACAGCGTTCTTGTGCAGCAGTACGATGCCTACGGCAAC CAACTCTGGAACCGCCAATTCCCAGGCAAACGGAGGGAACGAGTCCTGGCCATCGCTGTGGATGGAATCGGGAACATTTG GGTGGCAGGACATACCCAGGGAACCCCAGCGGGTCAGTTGCCTAGCGATGCCTTTGTGTGCCTTTACGACGTCAACGGCA ATGAACTCTGGAGCCACCAGTTTGGAACCCCTGACTTTGAATGGATCGGTTCTCTTGCTTCGGATAGAAGGGGAAATCTT TGGGTGGCGGGGGTAACTTGGGGAGCCTTTCCTGACCAACCCCGAGCCGGCATGAAAGATGCCTTTGTACTCAAATACGC TCGTTAG
Upstream 100 bases:
>100_bases TCAGTTATCCCGTGCTAACTTCTAGGCGGTACCCCCTTGTCAGGAAGCGCCGATCGCGGTAGCGGGACGGAGTCCTTTCC CGTCAGGGTGCCGTACGCAT
Downstream 100 bases:
>100_bases GCTGAGGCTTTGCCAGGGCGGGATCCCTCTGCGGCAGCTCAACACCCCAGTAGCCAGCAGAAAGCTGCCCCATGCTAGGC TCTAGGCGGTGCTGCCCTAG
Product: lipoprotein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 428; Mature: 428
Protein sequence:
>428_residues MNRKRPLERVVSLGLAFASSALLGACGEDPAPWLRQFGTPSSDEAHSIAVDERGNAWVVGVTHGTLPKQAGAGGGDAFVR KYNAQGKELWTRQFGTSSLDEALAVAVDRWGNAWVAGVTYRTFPHQVSAGGKEAFVRRYNPQGRELWTRRFGSGELDGVT ALAVNAEGNVWVAGDAVRGSGTESLAPSGQSRGKSFVHKYDSNGNLLWTRELELHRRAGALAADEEGNVWVVGSIQESLP GQSVASAGRSPRAGGFVRKYDPEGNQLWLRQFSGGRGDGAFSIAVGEMGNVWIAGFIQEAPTGQAGEYSVLVQQYDAYGN QLWNRQFPGKRRERVLAIAVDGIGNIWVAGHTQGTPAGQLPSDAFVCLYDVNGNELWSHQFGTPDFEWIGSLASDRRGNL WVAGVTWGAFPDQPRAGMKDAFVLKYAR
Sequences:
>Translated_428_residues MNRKRPLERVVSLGLAFASSALLGACGEDPAPWLRQFGTPSSDEAHSIAVDERGNAWVVGVTHGTLPKQAGAGGGDAFVR KYNAQGKELWTRQFGTSSLDEALAVAVDRWGNAWVAGVTYRTFPHQVSAGGKEAFVRRYNPQGRELWTRRFGSGELDGVT ALAVNAEGNVWVAGDAVRGSGTESLAPSGQSRGKSFVHKYDSNGNLLWTRELELHRRAGALAADEEGNVWVVGSIQESLP GQSVASAGRSPRAGGFVRKYDPEGNQLWLRQFSGGRGDGAFSIAVGEMGNVWIAGFIQEAPTGQAGEYSVLVQQYDAYGN QLWNRQFPGKRRERVLAIAVDGIGNIWVAGHTQGTPAGQLPSDAFVCLYDVNGNELWSHQFGTPDFEWIGSLASDRRGNL WVAGVTWGAFPDQPRAGMKDAFVLKYAR >Mature_428_residues MNRKRPLERVVSLGLAFASSALLGACGEDPAPWLRQFGTPSSDEAHSIAVDERGNAWVVGVTHGTLPKQAGAGGGDAFVR KYNAQGKELWTRQFGTSSLDEALAVAVDRWGNAWVAGVTYRTFPHQVSAGGKEAFVRRYNPQGRELWTRRFGSGELDGVT ALAVNAEGNVWVAGDAVRGSGTESLAPSGQSRGKSFVHKYDSNGNLLWTRELELHRRAGALAADEEGNVWVVGSIQESLP GQSVASAGRSPRAGGFVRKYDPEGNQLWLRQFSGGRGDGAFSIAVGEMGNVWIAGFIQEAPTGQAGEYSVLVQQYDAYGN QLWNRQFPGKRRERVLAIAVDGIGNIWVAGHTQGTPAGQLPSDAFVCLYDVNGNELWSHQFGTPDFEWIGSLASDRRGNL WVAGVTWGAFPDQPRAGMKDAFVLKYAR
Specific function: Unknown
COG id: COG3291
COG function: function code R; FOG: PKD repeat
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46197; Mature: 46197
Theoretical pI: Translated: 7.70; Mature: 7.70
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRKRPLERVVSLGLAFASSALLGACGEDPAPWLRQFGTPSSDEAHSIAVDERGNAWVVG CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCEEEEEECCCCEEEEE VTHGTLPKQAGAGGGDAFVRKYNAQGKELWTRQFGTSSLDEALAVAVDRWGNAWVAGVTY EECCCCCCCCCCCCCHHHHEECCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEE RTFPHQVSAGGKEAFVRRYNPQGRELWTRRFGSGELDGVTALAVNAEGNVWVAGDAVRGS ECCCCHHCCCCHHHHHCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCEEEEECCCCCC GTESLAPSGQSRGKSFVHKYDSNGNLLWTRELELHRRAGALAADEEGNVWVVGSIQESLP CCCCCCCCCHHCCCHHHEEECCCCCEEEEEEHHHHHHCCCEEECCCCCEEEEEEHHHHCC GQSVASAGRSPRAGGFVRKYDPEGNQLWLRQFSGGRGDGAFSIAVGEMGNVWIAGFIQEA CCHHHHCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCC PTGQAGEYSVLVQQYDAYGNQLWNRQFPGKRRERVLAIAVDGIGNIWVAGHTQGTPAGQL CCCCCCCEEHHHHHHHHHHHHHHCCCCCCHHHCEEEEEEECCCCCEEEEECCCCCCCCCC PSDAFVCLYDVNGNELWSHQFGTPDFEWIGSLASDRRGNLWVAGVTWGAFPDQPRAGMKD CCCCEEEEEECCCCEEECCCCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCC AFVLKYAR EEEEEECC >Mature Secondary Structure MNRKRPLERVVSLGLAFASSALLGACGEDPAPWLRQFGTPSSDEAHSIAVDERGNAWVVG CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCEEEEEECCCCEEEEE VTHGTLPKQAGAGGGDAFVRKYNAQGKELWTRQFGTSSLDEALAVAVDRWGNAWVAGVTY EECCCCCCCCCCCCCHHHHEECCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEE RTFPHQVSAGGKEAFVRRYNPQGRELWTRRFGSGELDGVTALAVNAEGNVWVAGDAVRGS ECCCCHHCCCCHHHHHCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCEEEEECCCCCC GTESLAPSGQSRGKSFVHKYDSNGNLLWTRELELHRRAGALAADEEGNVWVVGSIQESLP CCCCCCCCCHHCCCHHHEEECCCCCEEEEEEHHHHHHCCCEEECCCCCEEEEEEHHHHCC GQSVASAGRSPRAGGFVRKYDPEGNQLWLRQFSGGRGDGAFSIAVGEMGNVWIAGFIQEA CCHHHHCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCC PTGQAGEYSVLVQQYDAYGNQLWNRQFPGKRRERVLAIAVDGIGNIWVAGHTQGTPAGQL CCCCCCCEEHHHHHHHHHHHHHHCCCCCCHHHCEEEEEEECCCCCEEEEECCCCCCCCCC PSDAFVCLYDVNGNELWSHQFGTPDFEWIGSLASDRRGNLWVAGVTWGAFPDQPRAGMKD CCCCEEEEEECCCCEEECCCCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCC AFVLKYAR EEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA