| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is yfkN [H]
Identifier: 86607773
GI number: 86607773
Start: 288323
End: 290380
Strand: Direct
Name: yfkN [H]
Synonym: CYB_0274
Alternate gene names: 86607773
Gene position: 288323-290380 (Clockwise)
Preceding gene: 86607772
Following gene: 86607774
Centisome position: 9.46
GC content: 61.9
Gene sequence:
>2058_bases ATGAAACCAGCTTGCCGTGCTCGAGGGTCTGCCCCTGCCAAGAGATGGCTCCCGGATTGGCTGAACCCTCTGGCCAGGTC CCTGTGGGTCGGGTTGTGGTGTTTGGTGCTGAGCCTGGCCAGCGCCTGCGGTAGCAGCAGCTCGGTTCCCCCAACCGGCG GAGGGGCTGGGTTTATCGCCTCGGATCCCAATGTGGCTCTCTCGACTCAGCCGCCCGCTTTTACCCTGCAAATCCTACAT GCCAGCGACTTGGAAGCCTCGATCGCTGCCGTACAAGATGCGCCGCGCTTCTCGGCGGTGGTGAATGCTCTGCGCCCCCA ATTCCCAAATACGGTGGTGCTCTCCAGTGGGGACAACTATATCCCCAGCCCCTTCTACAATGCCAGCACGGATCGGTCTC TGCAAGGCCGTTACAACCTCACCCCTGGCAAAGCCGATATCGAGATCATCAACGCCATTGGCTTTGAGGCGGCTGCCTTC GGCAACCACGAGTTCGACCAAGGCACGCGCCAGATTCGCGATCTAATTCGGCCCGACACGGGCCGCGGCTACGCTGGGGC TCGTTTTCCCTACTTGAGCGCCAACCTCAGCTTCAGCGGTACCGGCGAATTGGCTAGCTCTGACTTTGCTGCTGATGGTC AAGAGGCCAGCTCTATCCGCGGCAAGATCGCCAAGACGGCGGTGATCACGGTAGGAGGGCAGCGGATCGGTCTGGTGGGA GCCACCACCACCCGTTTGGCGGCCATCTCTAGCCCCGGCCCCGAGGTGAGGGTAGAAGGCAGGGTGGACGATACTGACCA GGTGAGTGCCGCTCTAATCCAGGGCTTCGTCGATCAACTCACCGCTCAGGGCATCAACAAAATTATCCTCCTAGCCCATC TGCAACAGTTGCAAAACGAGGTAGCCCTGGCCAGCCAATTGCGAAATGTGGACATCATCATTGCCGGCGGATCCCACCGG GTGATCGCCAAGCCCACCGATCGCCTGCGCACTGATTTGCCCGATACCCGCAGGGGTGACTACCCCATCTTGCGCTCCTC CGCCAGTGGTCAACCGGTGGCGGTGGTCAACACCGGCTCCAACTATCGCTACGTGGGCCGCCTGGTGGTCAGCTTTGACG CCAACGGGGTTATTGCCCGCATTGACCCGGTGAGCGGTGCCTATGCCACCGACGACCAAGGGGTAGCAGCTGTCAGGGGC ACCCCCAATCCCGACGTAGTGCGGATAGCCAACGAAATTGGCAACATCATCCGCACCAAAGATGGCCGCACCTTCGGCTC CACCACCCAATTTCTCAACGGCCTGCGGGCAGAGGTGCGCACCGAGGAAACCAACCTGGGCAACCTCACTGCCGATGCCA ACTTGGCCTACGCCAGAACGGTCGATCCTTCTACGGTTATCTCCCTGAAAAATGGCGGTGGCATTCGCGCTCCCATTGGG GCTACCACCGGCGGCGGCGGCGGTGAGCCGGTGCGGCGCATCCCACCGGTGGCTAACCCTGAAGCCGGCAAGCAGTCCGG TCAAATCTCTCAGCTGGACATCGAAACGGCCCTTGCTTTTAACAACGGCCTCTCTCTGTTGACCGTCACCGCTGAGGAAC TGAAGCAGATAGTGGAACACGGGGTGGCGCAAACCCAGCCGGGAGCTACGCCGGGCCGCTTCCCCCAAATTGGCGGCTTT GCCTTTAGCTTTGATCCCTCGCGGCCACCGGGATCCCGCGTCCTCTCCTTGCGGGTGGATACGCCCACAGGTCGGGATGT GGTGGTGCGCAACGGCCAAGTGCAAGGGGATCCCAGACGCACCTTCCGCCTGGTGACCCTGGACTTCTTGGCCAACGGTG GGGATGACTATCCCTTCCCTCGCCTGTCCAACCCCAACCGGGTGAACTTGGCCCCCAGTTCCGGCATCACCTTCGATACC CCCGGCAGCGAGCAAGATGCCTTGGCTCGGTATTTGCGGCAGATCGGCGTGTTCACCCAAGCAGACACCCCGCCTGCCCA GGATACCCGCATCCAGAATCTGTCGGCCCGCCCCGATACGGTGCTGCAAGGGCTGTAG
Upstream 100 bases:
>100_bases TTGACCTAACCTTAAACAGGTCATAGCGAAACCCCAATCCCAGCCTTGGTAACGTGAACGCGGATGCGTCCTCTCTTGTG GATGGAGTGAAGGAATTGTC
Downstream 100 bases:
>100_bases ATTGGGTTAATGGACTGAGGCGGATGGATCCGGAGGAGTAGGGATTCCGATGCCAGACTCACTTCTTGCAAAAGGGGAGA GTGGCTTGGGTTAATTCCCT
Product: 5'-nucleotidase domain-containing protein
Products: NA
Alternate protein names: 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase; 5'-nucleotidase [H]
Number of amino acids: Translated: 685; Mature: 685
Protein sequence:
>685_residues MKPACRARGSAPAKRWLPDWLNPLARSLWVGLWCLVLSLASACGSSSSVPPTGGGAGFIASDPNVALSTQPPAFTLQILH ASDLEASIAAVQDAPRFSAVVNALRPQFPNTVVLSSGDNYIPSPFYNASTDRSLQGRYNLTPGKADIEIINAIGFEAAAF GNHEFDQGTRQIRDLIRPDTGRGYAGARFPYLSANLSFSGTGELASSDFAADGQEASSIRGKIAKTAVITVGGQRIGLVG ATTTRLAAISSPGPEVRVEGRVDDTDQVSAALIQGFVDQLTAQGINKIILLAHLQQLQNEVALASQLRNVDIIIAGGSHR VIAKPTDRLRTDLPDTRRGDYPILRSSASGQPVAVVNTGSNYRYVGRLVVSFDANGVIARIDPVSGAYATDDQGVAAVRG TPNPDVVRIANEIGNIIRTKDGRTFGSTTQFLNGLRAEVRTEETNLGNLTADANLAYARTVDPSTVISLKNGGGIRAPIG ATTGGGGGEPVRRIPPVANPEAGKQSGQISQLDIETALAFNNGLSLLTVTAEELKQIVEHGVAQTQPGATPGRFPQIGGF AFSFDPSRPPGSRVLSLRVDTPTGRDVVVRNGQVQGDPRRTFRLVTLDFLANGGDDYPFPRLSNPNRVNLAPSSGITFDT PGSEQDALARYLRQIGVFTQADTPPAQDTRIQNLSARPDTVLQGL
Sequences:
>Translated_685_residues MKPACRARGSAPAKRWLPDWLNPLARSLWVGLWCLVLSLASACGSSSSVPPTGGGAGFIASDPNVALSTQPPAFTLQILH ASDLEASIAAVQDAPRFSAVVNALRPQFPNTVVLSSGDNYIPSPFYNASTDRSLQGRYNLTPGKADIEIINAIGFEAAAF GNHEFDQGTRQIRDLIRPDTGRGYAGARFPYLSANLSFSGTGELASSDFAADGQEASSIRGKIAKTAVITVGGQRIGLVG ATTTRLAAISSPGPEVRVEGRVDDTDQVSAALIQGFVDQLTAQGINKIILLAHLQQLQNEVALASQLRNVDIIIAGGSHR VIAKPTDRLRTDLPDTRRGDYPILRSSASGQPVAVVNTGSNYRYVGRLVVSFDANGVIARIDPVSGAYATDDQGVAAVRG TPNPDVVRIANEIGNIIRTKDGRTFGSTTQFLNGLRAEVRTEETNLGNLTADANLAYARTVDPSTVISLKNGGGIRAPIG ATTGGGGGEPVRRIPPVANPEAGKQSGQISQLDIETALAFNNGLSLLTVTAEELKQIVEHGVAQTQPGATPGRFPQIGGF AFSFDPSRPPGSRVLSLRVDTPTGRDVVVRNGQVQGDPRRTFRLVTLDFLANGGDDYPFPRLSNPNRVNLAPSSGITFDT PGSEQDALARYLRQIGVFTQADTPPAQDTRIQNLSARPDTVLQGL >Mature_685_residues MKPACRARGSAPAKRWLPDWLNPLARSLWVGLWCLVLSLASACGSSSSVPPTGGGAGFIASDPNVALSTQPPAFTLQILH ASDLEASIAAVQDAPRFSAVVNALRPQFPNTVVLSSGDNYIPSPFYNASTDRSLQGRYNLTPGKADIEIINAIGFEAAAF GNHEFDQGTRQIRDLIRPDTGRGYAGARFPYLSANLSFSGTGELASSDFAADGQEASSIRGKIAKTAVITVGGQRIGLVG ATTTRLAAISSPGPEVRVEGRVDDTDQVSAALIQGFVDQLTAQGINKIILLAHLQQLQNEVALASQLRNVDIIIAGGSHR VIAKPTDRLRTDLPDTRRGDYPILRSSASGQPVAVVNTGSNYRYVGRLVVSFDANGVIARIDPVSGAYATDDQGVAAVRG TPNPDVVRIANEIGNIIRTKDGRTFGSTTQFLNGLRAEVRTEETNLGNLTADANLAYARTVDPSTVISLKNGGGIRAPIG ATTGGGGGEPVRRIPPVANPEAGKQSGQISQLDIETALAFNNGLSLLTVTAEELKQIVEHGVAQTQPGATPGRFPQIGGF AFSFDPSRPPGSRVLSLRVDTPTGRDVVVRNGQVQGDPRRTFRLVTLDFLANGGDDYPFPRLSNPNRVNLAPSSGITFDT PGSEQDALARYLRQIGVFTQADTPPAQDTRIQNLSARPDTVLQGL
Specific function: Catalyzes the release of inorganic phosphate from 2',3'- cyclic nucleotides through consecutive 2',3'-phosphodiesterase and 3'- (or 2') nucleotidase activities. Also possesses a 5'- nucleotidase activity. Does not catalyze the release of inorganic phospha
COG id: COG0737
COG function: function code F; 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases
Gene ontology:
Cell location: Secreted, cell wall; Peptidoglycan-anchor (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the 5'-nucleotidase family [H]
Homologues:
Organism=Homo sapiens, GI4505467, Length=577, Percent_Identity=27.209705372617, Blast_Score=147, Evalue=3e-35, Organism=Drosophila melanogaster, GI19922446, Length=524, Percent_Identity=24.236641221374, Blast_Score=129, Evalue=7e-30, Organism=Drosophila melanogaster, GI24654424, Length=524, Percent_Identity=24.236641221374, Blast_Score=129, Evalue=7e-30, Organism=Drosophila melanogaster, GI19922444, Length=533, Percent_Identity=24.577861163227, Blast_Score=122, Evalue=8e-28, Organism=Drosophila melanogaster, GI28573524, Length=635, Percent_Identity=23.9370078740157, Blast_Score=119, Evalue=5e-27, Organism=Drosophila melanogaster, GI221329836, Length=578, Percent_Identity=24.7404844290657, Blast_Score=105, Evalue=1e-22, Organism=Drosophila melanogaster, GI24641187, Length=581, Percent_Identity=23.2358003442341, Blast_Score=99, Evalue=1e-20,
Paralogues:
None
Copy number: 60 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008334 - InterPro: IPR006146 - InterPro: IPR006179 - InterPro: IPR019931 - InterPro: IPR004843 - InterPro: IPR001899 [H]
Pfam domain/function: PF02872 5_nucleotid_C; PF00149 Metallophos [H]
EC number: =3.1.3.6; =3.1.4.16; =3.1.3.5 [H]
Molecular weight: Translated: 72321; Mature: 72321
Theoretical pI: Translated: 8.42; Mature: 8.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.1 %Met (Translated Protein) 0.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.1 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPACRARGSAPAKRWLPDWLNPLARSLWVGLWCLVLSLASACGSSSSVPPTGGGAGFIA CCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEE SDPNVALSTQPPAFTLQILHASDLEASIAAVQDAPRFSAVVNALRPQFPNTVVLSSGDNY CCCCEEEECCCCCEEEEEEECCCCHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEECCCCC IPSPFYNASTDRSLQGRYNLTPGKADIEIINAIGFEAAAFGNHEFDQGTRQIRDLIRPDT CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEECCCCCHHHHHHHHHHHHCCCC GRGYAGARFPYLSANLSFSGTGELASSDFAADGQEASSIRGKIAKTAVITVGGQRIGLVG CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHEEEEEEEECCCEEEEEE ATTTRLAAISSPGPEVRVEGRVDDTDQVSAALIQGFVDQLTAQGINKIILLAHLQQLQNE CCHHHEEEECCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VALASQLRNVDIIIAGGSHRVIAKPTDRLRTDLPDTRRGDYPILRSSASGQPVAVVNTGS HHHHHHHCCEEEEEECCCCEEEECCHHHHHCCCCCCCCCCCCEEECCCCCCCEEEEECCC NYRYVGRLVVSFDANGVIARIDPVSGAYATDDQGVAAVRGTPNPDVVRIANEIGNIIRTK CEEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHEECC DGRTFGSTTQFLNGLRAEVRTEETNLGNLTADANLAYARTVDPSTVISLKNGGGIRAPIG CCCCCCCHHHHHHHHHHHHCCCCCCCCCEEECCCEEEEEECCCCEEEEEECCCCEECCCC ATTGGGGGEPVRRIPPVANPEAGKQSGQISQLDIETALAFNNGLSLLTVTAEELKQIVEH CCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEEEHHEEEEECCCCEEEEECHHHHHHHHHC GVAQTQPGATPGRFPQIGGFAFSFDPSRPPGSRVLSLRVDTPTGRDVVVRNGQVQGDPRR CCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCC TFRLVTLDFLANGGDDYPFPRLSNPNRVNLAPSSGITFDTPGSEQDALARYLRQIGVFTQ EEEEEEEEEECCCCCCCCCCCCCCCCEEEECCCCCEEECCCCCHHHHHHHHHHHHCCEEC ADTPPAQDTRIQNLSARPDTVLQGL CCCCCCCCCHHCCCCCCCHHHHCCC >Mature Secondary Structure MKPACRARGSAPAKRWLPDWLNPLARSLWVGLWCLVLSLASACGSSSSVPPTGGGAGFIA CCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEE SDPNVALSTQPPAFTLQILHASDLEASIAAVQDAPRFSAVVNALRPQFPNTVVLSSGDNY CCCCEEEECCCCCEEEEEEECCCCHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEECCCCC IPSPFYNASTDRSLQGRYNLTPGKADIEIINAIGFEAAAFGNHEFDQGTRQIRDLIRPDT CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEECCCCCHHHHHHHHHHHHCCCC GRGYAGARFPYLSANLSFSGTGELASSDFAADGQEASSIRGKIAKTAVITVGGQRIGLVG CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHEEEEEEEECCCEEEEEE ATTTRLAAISSPGPEVRVEGRVDDTDQVSAALIQGFVDQLTAQGINKIILLAHLQQLQNE CCHHHEEEECCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VALASQLRNVDIIIAGGSHRVIAKPTDRLRTDLPDTRRGDYPILRSSASGQPVAVVNTGS HHHHHHHCCEEEEEECCCCEEEECCHHHHHCCCCCCCCCCCCEEECCCCCCCEEEEECCC NYRYVGRLVVSFDANGVIARIDPVSGAYATDDQGVAAVRGTPNPDVVRIANEIGNIIRTK CEEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHEECC DGRTFGSTTQFLNGLRAEVRTEETNLGNLTADANLAYARTVDPSTVISLKNGGGIRAPIG CCCCCCCHHHHHHHHHHHHCCCCCCCCCEEECCCEEEEEECCCCEEEEEECCCCEECCCC ATTGGGGGEPVRRIPPVANPEAGKQSGQISQLDIETALAFNNGLSLLTVTAEELKQIVEH CCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEEEHHEEEEECCCCEEEEECHHHHHHHHHC GVAQTQPGATPGRFPQIGGFAFSFDPSRPPGSRVLSLRVDTPTGRDVVVRNGQVQGDPRR CCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCC TFRLVTLDFLANGGDDYPFPRLSNPNRVNLAPSSGITFDTPGSEQDALARYLRQIGVFTQ EEEEEEEEEECCCCCCCCCCCCCCCCEEEECCCCCEEECCCCCHHHHHHHHHHHHCCEEC ADTPPAQDTRIQNLSARPDTVLQGL CCCCCCCCCHHCCCCCCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8969503; 9384377 [H]