| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86607751
Identifier: 86607751
GI number: 86607751
Start: 267544
End: 268326
Strand: Direct
Name: 86607751
Synonym: CYB_0252
Alternate gene names: NA
Gene position: 267544-268326 (Clockwise)
Preceding gene: 86607750
Following gene: 86607753
Centisome position: 8.78
GC content: 62.2
Gene sequence:
>783_bases ATGCCTTTTATTAGCCTGTTGACGGATTTTGGCCTGCAGGATCCCTATGTGGGCATTATGAAAGGGGTGATTCATACCCT TTCCCCACAGGCTCAACTCATCGACCTCAGCCATGGGATCCCGCCTCAGGATGTGGCGGCGGCTCGCTTTGCCCTGATGA CGGCCTACCCCTATCTGCCGTCGGGCACCATTCACCTGGCCGTTGTGGATCCAGGGGTGGGGAGTAGCCGCCGGGCGGTA GCCATCCAAACCGAGACGGGCTTTTTGGTTGGCCCTGACAATGGCCTGTTCAGCGGCGTTTTGGCCCAAACTCCGGCGCT GGCTGCTGTGGAACTCAACCGGCCCCGCTATTGGCGCACCCCCTCTCCCAGCCGCACCTTTCATGGGCGGGATATTTTTG CCCCGGTTGCCGCTCATCTGGCCAACGGGATCCCTTTGGCGGAGCTGGGGGATCCCCTAGACGTAGCAGAACTAACCCGC TGGGAGTGGCCGCCACCCCAGATGGAGACCAACGGCTGTCGCGGCCTGGTCCAGGCCATCGACCACTTCGGCAACGGCAT CACCAACCTGCCCGGACATTGGGTGGAAGGTCGAAGCTGGAGCGCCTGGATCAAAGGGATCCCCGTCCGCTCCGTGGCCA CCTTTGCTGAGGGAGAAGTTGGGGAAGTGCTGGCCCTGGTGGGCAGCTCCGGCTGGGTGGAGATCGTGCAAAACCGAGGC AATGCCAGCCGTGCCTTGGGTTTCAAAGTGGGAGATGAGGTGCGCGTGCAGTGGAGCGGCTAG
Upstream 100 bases:
>100_bases AGCGCCCGCAACCTGCTCTTGCTGCCCGCTAGCCACCCCATCCATAAGCGCTGTTATCTTTTGGGATCCTTAAACTGGGA TCCTCAAGCCTCAAAAGGGT
Downstream 100 bases:
>100_bases ATCCCCTCGCCTGAAAAGAGAGGGAGAGACTGGGGATCCTAGGCAGGTTGGCTTTCCACCGTCACGGCTTCCGTCGGAGT AGTGGGGTTTGAGGCGCCCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 260; Mature: 259
Protein sequence:
>260_residues MPFISLLTDFGLQDPYVGIMKGVIHTLSPQAQLIDLSHGIPPQDVAAARFALMTAYPYLPSGTIHLAVVDPGVGSSRRAV AIQTETGFLVGPDNGLFSGVLAQTPALAAVELNRPRYWRTPSPSRTFHGRDIFAPVAAHLANGIPLAELGDPLDVAELTR WEWPPPQMETNGCRGLVQAIDHFGNGITNLPGHWVEGRSWSAWIKGIPVRSVATFAEGEVGEVLALVGSSGWVEIVQNRG NASRALGFKVGDEVRVQWSG
Sequences:
>Translated_260_residues MPFISLLTDFGLQDPYVGIMKGVIHTLSPQAQLIDLSHGIPPQDVAAARFALMTAYPYLPSGTIHLAVVDPGVGSSRRAV AIQTETGFLVGPDNGLFSGVLAQTPALAAVELNRPRYWRTPSPSRTFHGRDIFAPVAAHLANGIPLAELGDPLDVAELTR WEWPPPQMETNGCRGLVQAIDHFGNGITNLPGHWVEGRSWSAWIKGIPVRSVATFAEGEVGEVLALVGSSGWVEIVQNRG NASRALGFKVGDEVRVQWSG >Mature_259_residues PFISLLTDFGLQDPYVGIMKGVIHTLSPQAQLIDLSHGIPPQDVAAARFALMTAYPYLPSGTIHLAVVDPGVGSSRRAVA IQTETGFLVGPDNGLFSGVLAQTPALAAVELNRPRYWRTPSPSRTFHGRDIFAPVAAHLANGIPLAELGDPLDVAELTRW EWPPPQMETNGCRGLVQAIDHFGNGITNLPGHWVEGRSWSAWIKGIPVRSVATFAEGEVGEVLALVGSSGWVEIVQNRGN ASRALGFKVGDEVRVQWSG
Specific function: Unknown
COG id: COG1912
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002747 - InterPro: IPR023227 - InterPro: IPR023228 [H]
Pfam domain/function: PF01887 DUF62 [H]
EC number: NA
Molecular weight: Translated: 27886; Mature: 27755
Theoretical pI: Translated: 6.15; Mature: 6.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPFISLLTDFGLQDPYVGIMKGVIHTLSPQAQLIDLSHGIPPQDVAAARFALMTAYPYLP CCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC SGTIHLAVVDPGVGSSRRAVAIQTETGFLVGPDNGLFSGVLAQTPALAAVELNRPRYWRT CCEEEEEEECCCCCCCCEEEEEEECCCEEECCCCCHHHHHHHCCCCEEEEECCCCCEECC PSPSRTFHGRDIFAPVAAHLANGIPLAELGDPLDVAELTRWEWPPPQMETNGCRGLVQAI CCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHH DHFGNGITNLPGHWVEGRSWSAWIKGIPVRSVATFAEGEVGEVLALVGSSGWVEIVQNRG HHHCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCEEHHHCCC NASRALGFKVGDEVRVQWSG CCCCEEEEECCCEEEEEECC >Mature Secondary Structure PFISLLTDFGLQDPYVGIMKGVIHTLSPQAQLIDLSHGIPPQDVAAARFALMTAYPYLP CHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC SGTIHLAVVDPGVGSSRRAVAIQTETGFLVGPDNGLFSGVLAQTPALAAVELNRPRYWRT CCEEEEEEECCCCCCCCEEEEEEECCCEEECCCCCHHHHHHHCCCCEEEEECCCCCEECC PSPSRTFHGRDIFAPVAAHLANGIPLAELGDPLDVAELTRWEWPPPQMETNGCRGLVQAI CCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHH DHFGNGITNLPGHWVEGRSWSAWIKGIPVRSVATFAEGEVGEVLALVGSSGWVEIVQNRG HHHCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCEEHHHCCC NASRALGFKVGDEVRVQWSG CCCCEEEEECCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]