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The map label for this gene is gid

Identifier: 86607553

GI number: 86607553

Start: 64391

End: 65770

Strand: Direct

Name: gid

Synonym: CYB_0051

Alternate gene names: 86607553

Gene position: 64391-65770 (Clockwise)

Preceding gene: 86607551

Following gene: 86607557

Centisome position: 2.11

GC content: 61.88

Gene sequence:

>1380_bases
ATGAACCCTCCAACTAACCCAAGGGCTTGCAGCCCGCTTGCACGAGCGGGATCCTTTGCCCCCATCCATGTTGTGGGCGG
GGGGTTGGCGGGGACAGAAGCTGCTTGGCAAATTGCCCAGGCAGGGTTGCCTGTCATCCTTTCGGAGATGCGCCCCGTGC
GTCAGAGCCCGGCCCATCACACCGATCAGTTGGGGGAGCTGGTGTGCAGCAACTCCTTTGGGGCTGCAGCCAGCGATCGG
GCGGCAGGGCTACTCAAGGAAGAACTGCGACAACTGGGATCCCTGGTGATCGCGACGGCGGATTGCCATGCAGTGCCGGC
AGGAGGGGCATTGGCAGTGGATCGGGCCCGCTTCAGCCAGGCTCTCACGGAAGCCATTCAAAACCATCCCCGCATCACCC
TGCGTCGGGAGGAGGTGACGGAGATCCCGGAGGGCATTGCCGTCCTCTGTACCGGCCCTCTGACCAGCGATCCCCTGGCC
AAGGCACTGCAAGCCTTTACGGGCCTGGAGTACCTGAGCTTTTTCGATGCTTCTAGCCCCATTGTTACCGGGGATTCGTT
GAACCGAGCGGTGGTGTTTCAGGCTTCCCGCTACGACAAGGGGGAAGCAGCCTATCTCAACTGCCCCATGACGGAAGCGG
AGTACGAACGGTTTTGGCGGGCGCTGGTGGAGGCAGAGCAGGCGCCCCTCAAGGATTTTGAACGGGAGGAGCGCAAGTTT
TTCGAGGGCTGCTTGCCGATTGAAGAAATGGCGCGCCGGGGCAAAGACACCCTCTGTTTCGGCCCCTTGAAGCCGGTGGG
GCTGGTGGATCCGCGCACGGGATCCCGTCCTTACGCGGTGGTGCAGTTGCGGCAAGAGGACAAAGCAGGGCAGCTGTGGA
ACTTGGTGGGCTTTCAAACCAACTTGAAATGGGGAGAACAGCAGCGGGTCTTTCGCCTCATCCCCGGCCTGGAACAGGCG
GAGTTTGTCCGCTTTGGGGTGATGCACCGCAATACATTTTTGAATTCGCCCCAGCTTCTGTGGCCGACCTTGCAATTCCG
TCGCCGACCCACGCTGTTTGCCGCCGGCCAGTTGGTGGGCACCGAGGGCTATGCCTGCGCGGTGGCAGGGGGATGGTTGG
CCGGACAGAACGCCGCCCGCCTGGCTCTGGGGTTGCCCTTGATCACGCTGCCCCCCGAAACGATGATGGGATCCCTGTTT
CAGTTCATCAGCAGCGCGGATCCCAGGCACTTTCAGCCGATGCCGGCCAATTTTGGGCTGTTGCCGGATTTGGAGGGGCG
CAAGCTTCGCAACAAGCAGGAGCGCTATGGCCGTTACCGGGATCGCGCTTTGGCTGCTCTGAAAACGACTGGGTTGGTGC
GCCAAGTGCAAACCGCCTAG

Upstream 100 bases:

>100_bases
GGTCGGGCCATGCTGATGGTTGGTATAGTGGGTCTGACCTGGGCCGTTTCCGGCCTCGGCAGGGTGCGTTCTATTCTTCT
CTTCCCTCCCGGAGGTTGTG

Downstream 100 bases:

>100_bases
GGGAGCTTGGAGCGTGTTCCCGACCATTGCGATCCAAGTCAAAGTCGAGATTGAGCGTTATCGTCATTTGAAACTAGGTT
GTGTTGATCTTTCATTTGAG

Product: tRNA (uracil-5-)-methyltransferase Gid

Products: NA

Alternate protein names: Folate-dependent tRNA (uracil-5-)-methyltransferase; Folate-dependent tRNA(M-5-U54)-methyltransferase

Number of amino acids: Translated: 459; Mature: 459

Protein sequence:

>459_residues
MNPPTNPRACSPLARAGSFAPIHVVGGGLAGTEAAWQIAQAGLPVILSEMRPVRQSPAHHTDQLGELVCSNSFGAAASDR
AAGLLKEELRQLGSLVIATADCHAVPAGGALAVDRARFSQALTEAIQNHPRITLRREEVTEIPEGIAVLCTGPLTSDPLA
KALQAFTGLEYLSFFDASSPIVTGDSLNRAVVFQASRYDKGEAAYLNCPMTEAEYERFWRALVEAEQAPLKDFEREERKF
FEGCLPIEEMARRGKDTLCFGPLKPVGLVDPRTGSRPYAVVQLRQEDKAGQLWNLVGFQTNLKWGEQQRVFRLIPGLEQA
EFVRFGVMHRNTFLNSPQLLWPTLQFRRRPTLFAAGQLVGTEGYACAVAGGWLAGQNAARLALGLPLITLPPETMMGSLF
QFISSADPRHFQPMPANFGLLPDLEGRKLRNKQERYGRYRDRALAALKTTGLVRQVQTA

Sequences:

>Translated_459_residues
MNPPTNPRACSPLARAGSFAPIHVVGGGLAGTEAAWQIAQAGLPVILSEMRPVRQSPAHHTDQLGELVCSNSFGAAASDR
AAGLLKEELRQLGSLVIATADCHAVPAGGALAVDRARFSQALTEAIQNHPRITLRREEVTEIPEGIAVLCTGPLTSDPLA
KALQAFTGLEYLSFFDASSPIVTGDSLNRAVVFQASRYDKGEAAYLNCPMTEAEYERFWRALVEAEQAPLKDFEREERKF
FEGCLPIEEMARRGKDTLCFGPLKPVGLVDPRTGSRPYAVVQLRQEDKAGQLWNLVGFQTNLKWGEQQRVFRLIPGLEQA
EFVRFGVMHRNTFLNSPQLLWPTLQFRRRPTLFAAGQLVGTEGYACAVAGGWLAGQNAARLALGLPLITLPPETMMGSLF
QFISSADPRHFQPMPANFGLLPDLEGRKLRNKQERYGRYRDRALAALKTTGLVRQVQTA
>Mature_459_residues
MNPPTNPRACSPLARAGSFAPIHVVGGGLAGTEAAWQIAQAGLPVILSEMRPVRQSPAHHTDQLGELVCSNSFGAAASDR
AAGLLKEELRQLGSLVIATADCHAVPAGGALAVDRARFSQALTEAIQNHPRITLRREEVTEIPEGIAVLCTGPLTSDPLA
KALQAFTGLEYLSFFDASSPIVTGDSLNRAVVFQASRYDKGEAAYLNCPMTEAEYERFWRALVEAEQAPLKDFEREERKF
FEGCLPIEEMARRGKDTLCFGPLKPVGLVDPRTGSRPYAVVQLRQEDKAGQLWNLVGFQTNLKWGEQQRVFRLIPGLEQA
EFVRFGVMHRNTFLNSPQLLWPTLQFRRRPTLFAAGQLVGTEGYACAVAGGWLAGQNAARLALGLPLITLPPETMMGSLF
QFISSADPRHFQPMPANFGLLPDLEGRKLRNKQERYGRYRDRALAALKTTGLVRQVQTA

Specific function: Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs

COG id: COG1206

COG function: function code J; NAD(FAD)-utilizing enzyme possibly involved in translation

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the MnmG family. TrmFO subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TRMFO_SYNJB (Q2JQ64)

Other databases:

- EMBL:   CP000240
- RefSeq:   YP_476315.1
- ProteinModelPortal:   Q2JQ64
- SMR:   Q2JQ64
- STRING:   Q2JQ64
- GeneID:   3899976
- GenomeReviews:   CP000240_GR
- KEGG:   cyb:CYB_0051
- TIGR:   CYB_0051
- eggNOG:   COG1206
- HOGENOM:   HBG285041
- OMA:   FEGCLPI
- ProtClustDB:   PRK05335
- BioCyc:   SSP321332:CYB_0051-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01037
- InterPro:   IPR004417
- InterPro:   IPR002218
- TIGRFAMs:   TIGR00137

Pfam domain/function: PF01134 GIDA

EC number: =2.1.1.74

Molecular weight: Translated: 50318; Mature: 50318

Theoretical pI: Translated: 8.39; Mature: 8.39

Prosite motif: PS01280 GIDA_1; PS01281 GIDA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPPTNPRACSPLARAGSFAPIHVVGGGLAGTEAAWQIAQAGLPVILSEMRPVRQSPAHH
CCCCCCCCCCCHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCH
TDQLGELVCSNSFGAAASDRAAGLLKEELRQLGSLVIATADCHAVPAGGALAVDRARFSQ
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCEEHHHHHHHH
ALTEAIQNHPRITLRREEVTEIPEGIAVLCTGPLTSDPLAKALQAFTGLEYLSFFDASSP
HHHHHHHCCCCEEEEHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCC
IVTGDSLNRAVVFQASRYDKGEAAYLNCPMTEAEYERFWRALVEAEQAPLKDFEREERKF
EEECCCCCEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
FEGCLPIEEMARRGKDTLCFGPLKPVGLVDPRTGSRPYAVVQLRQEDKAGQLWNLVGFQT
HHCCCCHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEHHHCEEC
NLKWGEQQRVFRLIPGLEQAEFVRFGVMHRNTFLNSPQLLWPTLQFRRRPTLFAAGQLVG
CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCEEECCEEEC
TEGYACAVAGGWLAGQNAARLALGLPLITLPPETMMGSLFQFISSADPRHFQPMPANFGL
CCCCEEEEECCCCCCCCHHHHHHCCCEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
LPDLEGRKLRNKQERYGRYRDRALAALKTTGLVRQVQTA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNPPTNPRACSPLARAGSFAPIHVVGGGLAGTEAAWQIAQAGLPVILSEMRPVRQSPAHH
CCCCCCCCCCCHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCH
TDQLGELVCSNSFGAAASDRAAGLLKEELRQLGSLVIATADCHAVPAGGALAVDRARFSQ
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCEEHHHHHHHH
ALTEAIQNHPRITLRREEVTEIPEGIAVLCTGPLTSDPLAKALQAFTGLEYLSFFDASSP
HHHHHHHCCCCEEEEHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCC
IVTGDSLNRAVVFQASRYDKGEAAYLNCPMTEAEYERFWRALVEAEQAPLKDFEREERKF
EEECCCCCEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
FEGCLPIEEMARRGKDTLCFGPLKPVGLVDPRTGSRPYAVVQLRQEDKAGQLWNLVGFQT
HHCCCCHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEHHHCEEC
NLKWGEQQRVFRLIPGLEQAEFVRFGVMHRNTFLNSPQLLWPTLQFRRRPTLFAAGQLVG
CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCEEECCEEEC
TEGYACAVAGGWLAGQNAARLALGLPLITLPPETMMGSLFQFISSADPRHFQPMPANFGL
CCCCEEEEECCCCCCCCHHHHHHCCCEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
LPDLEGRKLRNKQERYGRYRDRALAALKTTGLVRQVQTA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA