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The map label for this gene is yodC [H]

Identifier: 86607551

GI number: 86607551

Start: 62498

End: 63124

Strand: Direct

Name: yodC [H]

Synonym: CYB_0049

Alternate gene names: 86607551

Gene position: 62498-63124 (Clockwise)

Preceding gene: 86607548

Following gene: 86607553

Centisome position: 2.05

GC content: 59.17

Gene sequence:

>627_bases
ATGGACGCCCTAACTGCCCTGAAAGAGCGCATTTCCGCCGACAAATTGGATCCCAGCCGCCGTTTATCGGAAGCGGAGAT
CCGAGAGCTGGTGGCTTATGCTACGGAAGCTCCTTCTTCCTTCAACATTCAGCACTGGCGGTTTGTTGCGGTCACCGACC
CGGAAGACAAAGAGCGCCTCAAATCTCTGGCCTACAACCAACAGAAGGTGGCGGATGCATCGGTGGTGTTTATCATCCTG
GGGGATCTGCGGGGGTATGAGAAACTGCCTGAAATTGTGCAAAGAAGCGTTGCTGCCGGGATCCTCCCCCCCGAAAAAGC
GGAAGGCTGGGTGAACATGGCCCAGGCAACCTATCTCCACAATCCCACCTTGGCGCGGGATGAAGCGATTCGCTCTGGGG
CGATGGCTGCCATGGCGCTGATGATCGCGGCTCAGGCCAAGGGTTTGGTGAGCGGGCCGATGATCGGCTTTGATCCGGAA
GGGGTAAAGCGGGAGTTCGGCATTGCCGACCGCTACGTGCCGGTGATGCTGCTGGCGGTTGGATATGCGGCAGCGGGTAA
CCTGCCGCGCAAGCCTCGCTTGGGGGTGGATGAAGTTCTGGCCTTTGGGCGAGGGCGGGAGTTTTAG

Upstream 100 bases:

>100_bases
AAAGAAGACAGACCGTTTGAACACGGAATGTATAGCCATTTGCCAATCCTGCCCCTACCTTTGGGGGGAGCAGCCTTTCT
ACCGACACTTGAGGATCCCT

Downstream 100 bases:

>100_bases
CCCTAGGCTCAGGTGGGATCCCTGTCGCCCTCTCCTGGGCTCCTACCGGCATCAAGCCTTGAGAAAATGAACCAGCTGTT
GCAAGCGATCCCAAGCGGCA

Product: nitroreductase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MDALTALKERISADKLDPSRRLSEAEIRELVAYATEAPSSFNIQHWRFVAVTDPEDKERLKSLAYNQQKVADASVVFIIL
GDLRGYEKLPEIVQRSVAAGILPPEKAEGWVNMAQATYLHNPTLARDEAIRSGAMAAMALMIAAQAKGLVSGPMIGFDPE
GVKREFGIADRYVPVMLLAVGYAAAGNLPRKPRLGVDEVLAFGRGREF

Sequences:

>Translated_208_residues
MDALTALKERISADKLDPSRRLSEAEIRELVAYATEAPSSFNIQHWRFVAVTDPEDKERLKSLAYNQQKVADASVVFIIL
GDLRGYEKLPEIVQRSVAAGILPPEKAEGWVNMAQATYLHNPTLARDEAIRSGAMAAMALMIAAQAKGLVSGPMIGFDPE
GVKREFGIADRYVPVMLLAVGYAAAGNLPRKPRLGVDEVLAFGRGREF
>Mature_208_residues
MDALTALKERISADKLDPSRRLSEAEIRELVAYATEAPSSFNIQHWRFVAVTDPEDKERLKSLAYNQQKVADASVVFIIL
GDLRGYEKLPEIVQRSVAAGILPPEKAEGWVNMAQATYLHNPTLARDEAIRSGAMAAMALMIAAQAKGLVSGPMIGFDPE
GVKREFGIADRYVPVMLLAVGYAAAGNLPRKPRLGVDEVLAFGRGREF

Specific function: Putative nitroreductase that may contribute to the degradation of aromatic compounds (Potential) [H]

COG id: COG0778

COG function: function code C; Nitroreductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nitroreductase family [H]

Homologues:

Organism=Escherichia coli, GI1787243, Length=184, Percent_Identity=30.9782608695652, Blast_Score=77, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000415 [H]

Pfam domain/function: PF00881 Nitroreductase [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 22739; Mature: 22739

Theoretical pI: Translated: 6.56; Mature: 6.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDALTALKERISADKLDPSRRLSEAEIRELVAYATEAPSSFNIQHWRFVAVTDPEDKERL
CCHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCHHHHH
KSLAYNQQKVADASVVFIILGDLRGYEKLPEIVQRSVAAGILPPEKAEGWVNMAQATYLH
HHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
NPTLARDEAIRSGAMAAMALMIAAQAKGLVSGPMIGFDPEGVKREFGIADRYVPVMLLAV
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHH
GYAAAGNLPRKPRLGVDEVLAFGRGREF
HHHHCCCCCCCCCCCHHHHHHHCCCCCC
>Mature Secondary Structure
MDALTALKERISADKLDPSRRLSEAEIRELVAYATEAPSSFNIQHWRFVAVTDPEDKERL
CCHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCHHHHH
KSLAYNQQKVADASVVFIILGDLRGYEKLPEIVQRSVAAGILPPEKAEGWVNMAQATYLH
HHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
NPTLARDEAIRSGAMAAMALMIAAQAKGLVSGPMIGFDPEGVKREFGIADRYVPVMLLAV
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHH
GYAAAGNLPRKPRLGVDEVLAFGRGREF
HHHHCCCCCCCCCCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: Fmn (Potential) [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]