| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86607543
Identifier: 86607543
GI number: 86607543
Start: 51934
End: 52434
Strand: Direct
Name: 86607543
Synonym: CYB_0042
Alternate gene names: NA
Gene position: 51934-52434 (Clockwise)
Preceding gene: 86607542
Following gene: 86607548
Centisome position: 1.7
GC content: 51.1
Gene sequence:
>501_bases ATGACTCTGTTTCAGTTTGAGCAAGATTTTGCCGACTCTCTGCGATGCATCCCCATGACCTTGCGCCTAAAGCTGGATTT GTGCGGGATCAAGCTCAAGCTCCATCAATGGGCCAAGTTTTCCTTAGAAGAGCGGCGGAAGTGTGTTGATTGGCCCTCTG AATCTCCACAGGATCTAGAAGAACTCCGCAACCATCTGCGCCATTTGGTTCGCTCCATCTGCCACGAAGAGGCGCAAGAG ATTCCCATTGATCCCCAGCCTGAATGGCAAAATCCCAACCAGATCCCAATGGCTGTCCAACAAAAAGCTCAAGACCTGGG GATCCGGCTTGCCCTCGATTTCTGGAGAAACTTGCACGATATCCAGAGATTTGCCTTGCTGAAGTTGAGCCGATCCCATC ACGAAAACAAAAATTTCTTGCCCGCTCTGCGAGAGTTTGGCCTGAAGATGGCGAGGGATGGTGATTGCAGTTACTGTAAA CTACCCGGCTCCGACCGCTAA
Upstream 100 bases:
>100_bases CCAGCCGGAATTAAAAGCCTGTGCCGTTGCTCTTGAGAAAGCCGACCCACCGCTCAAGCAATCCCCTCAACTCTAGATTT GGTTCCTAATCGAGGTTCCC
Downstream 100 bases:
>100_bases GCGATACGGAGCGGGCTTTCAGTAGCCCTGAGCCTGTTCTGCTCTACCAGAGAACAAAACAAGCCCGGACCTCTAGGCTG GTTTACGACAGCCCCCAAGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 166; Mature: 165
Protein sequence:
>166_residues MTLFQFEQDFADSLRCIPMTLRLKLDLCGIKLKLHQWAKFSLEERRKCVDWPSESPQDLEELRNHLRHLVRSICHEEAQE IPIDPQPEWQNPNQIPMAVQQKAQDLGIRLALDFWRNLHDIQRFALLKLSRSHHENKNFLPALREFGLKMARDGDCSYCK LPGSDR
Sequences:
>Translated_166_residues MTLFQFEQDFADSLRCIPMTLRLKLDLCGIKLKLHQWAKFSLEERRKCVDWPSESPQDLEELRNHLRHLVRSICHEEAQE IPIDPQPEWQNPNQIPMAVQQKAQDLGIRLALDFWRNLHDIQRFALLKLSRSHHENKNFLPALREFGLKMARDGDCSYCK LPGSDR >Mature_165_residues TLFQFEQDFADSLRCIPMTLRLKLDLCGIKLKLHQWAKFSLEERRKCVDWPSESPQDLEELRNHLRHLVRSICHEEAQEI PIDPQPEWQNPNQIPMAVQQKAQDLGIRLALDFWRNLHDIQRFALLKLSRSHHENKNFLPALREFGLKMARDGDCSYCKL PGSDR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19629; Mature: 19498
Theoretical pI: Translated: 7.51; Mature: 7.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 3.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLFQFEQDFADSLRCIPMTLRLKLDLCGIKLKLHQWAKFSLEERRKCVDWPSESPQDLE CCCCHHHHHHHHCHHHCCHHEEEEEEHHCEEHHHHHHHHCCHHHHHHHCCCCCCCHHHHH ELRNHLRHLVRSICHEEAQEIPIDPQPEWQNPNQIPMAVQQKAQDLGIRLALDFWRNLHD HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH IQRFALLKLSRSHHENKNFLPALREFGLKMARDGDCSYCKLPGSDR HHHHHHHHHHHHHCCCCCHHHHHHHHCCHHCCCCCCCEEECCCCCC >Mature Secondary Structure TLFQFEQDFADSLRCIPMTLRLKLDLCGIKLKLHQWAKFSLEERRKCVDWPSESPQDLE CCCHHHHHHHHCHHHCCHHEEEEEEHHCEEHHHHHHHHCCHHHHHHHCCCCCCCHHHHH ELRNHLRHLVRSICHEEAQEIPIDPQPEWQNPNQIPMAVQQKAQDLGIRLALDFWRNLHD HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH IQRFALLKLSRSHHENKNFLPALREFGLKMARDGDCSYCKLPGSDR HHHHHHHHHHHHHCCCCCHHHHHHHHCCHHCCCCCCCEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA