| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86607535
Identifier: 86607535
GI number: 86607535
Start: 40889
End: 41899
Strand: Direct
Name: 86607535
Synonym: CYB_0033
Alternate gene names: NA
Gene position: 40889-41899 (Clockwise)
Preceding gene: 86607533
Following gene: 86607536
Centisome position: 1.34
GC content: 61.72
Gene sequence:
>1011_bases GTGCCGATTGCCAGCTTCCTGTGCCGGTTGGATCGCCAGACCCGCAGCTTCACGGGGCCTATTTACGCCGAACAGCCCCA GGTTGCCACCTGCAACCCCGGTCGCCTTACGCCTGCAGCAGCCCAAAAGATGATGGATCGGCTGAATTTTCTACGGCTGT TGCACCAGTTACCGCCGGTGAAGCTCAATCCTCAGTTCCTAGAAGCCGCCCAGCAAGCGGCCTTGATGCAGGTAGCCAAT GGTACTCTCAGCCACCAGCCGCCCCCTTCTTGGCGCTGCTTTACCCCTGCTGGGGAGGCGGGATCCCGCTTCAGCAACCT GGCGGTTGGGCCCATCCTAGAGCTGAACGGCCCCGATCCAGGCCGGGTGTTGGCGCGGCAGGTGGACATCTATTTTGCCG AGCCAGGTCGAGAAAACTTTGTGGATGTGGGGCATCGCCGCTGGAACCTGTATCCTCAGTACGCCCAGGGGGCCTACGGC ATTGTCTTTGACCCACGGGCTGGACGGGTGACCCAGGCCAACGCCAACTGGATCTTCGGTTTTGACGAGTCGGTGCCAGA TCCAGAGTTCATCGCCTTCCCGGAGAAAGACGGCTACCTCTACCGCCTAGAAGGGTTTTCCGGCCAGCCCCTGTCTGCCT ACCGCTGGTCTTTCTCGGTGCCCAGCCGTGGCGGCAAGGCTGATCTCAGCCAAGCCCAAGTCCGCATCACCGATGCCCTC AGCGGCGAGCCGGTGCCTGTTGGAGATCTCCGCGTGGGGGATCCCGCCTTTGGCCTGGAAACTTTGACCTACTCCGTGGG TTCGATCCAGCCCAATCGCAACTACACCTTTGAAATTAGCGGCATTCGCCTCAACGGTGGCCCCCCCCGCAGTTACCGCT ACACCACCGCTCTCTACGACTGCGATCCCCAAACTTCCCAACGGCCCGCACCCCTCACCGAAGGGCTGGGGATCCCGCCC CGTCTGCTCTGGCAGAGGGAGCCTTTCAACTCTTTCAACCCTCTCAACTAG
Upstream 100 bases:
>100_bases TCAGCTTTGGGCTTTGAGGATCGTGGGGATCTTTTGTCTTTGTCTGCTGGCGGCCTGTGGAGGATCCCCTACCTCGATGG AGCCACCGCGGGCAGGGGAA
Downstream 100 bases:
>100_bases CTTTTCCTCACCCCCAGCCCCTTTCCCAAAGGGGAGAGAGGAGTCTGCTGCTCCTGGAAGCTTGACTTTATGCATAAAGC GCAATTCGAGAATGACAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: SCP Family Protein; Secreted Protein
Number of amino acids: Translated: 336; Mature: 335
Protein sequence:
>336_residues MPIASFLCRLDRQTRSFTGPIYAEQPQVATCNPGRLTPAAAQKMMDRLNFLRLLHQLPPVKLNPQFLEAAQQAALMQVAN GTLSHQPPPSWRCFTPAGEAGSRFSNLAVGPILELNGPDPGRVLARQVDIYFAEPGRENFVDVGHRRWNLYPQYAQGAYG IVFDPRAGRVTQANANWIFGFDESVPDPEFIAFPEKDGYLYRLEGFSGQPLSAYRWSFSVPSRGGKADLSQAQVRITDAL SGEPVPVGDLRVGDPAFGLETLTYSVGSIQPNRNYTFEISGIRLNGGPPRSYRYTTALYDCDPQTSQRPAPLTEGLGIPP RLLWQREPFNSFNPLN
Sequences:
>Translated_336_residues MPIASFLCRLDRQTRSFTGPIYAEQPQVATCNPGRLTPAAAQKMMDRLNFLRLLHQLPPVKLNPQFLEAAQQAALMQVAN GTLSHQPPPSWRCFTPAGEAGSRFSNLAVGPILELNGPDPGRVLARQVDIYFAEPGRENFVDVGHRRWNLYPQYAQGAYG IVFDPRAGRVTQANANWIFGFDESVPDPEFIAFPEKDGYLYRLEGFSGQPLSAYRWSFSVPSRGGKADLSQAQVRITDAL SGEPVPVGDLRVGDPAFGLETLTYSVGSIQPNRNYTFEISGIRLNGGPPRSYRYTTALYDCDPQTSQRPAPLTEGLGIPP RLLWQREPFNSFNPLN >Mature_335_residues PIASFLCRLDRQTRSFTGPIYAEQPQVATCNPGRLTPAAAQKMMDRLNFLRLLHQLPPVKLNPQFLEAAQQAALMQVANG TLSHQPPPSWRCFTPAGEAGSRFSNLAVGPILELNGPDPGRVLARQVDIYFAEPGRENFVDVGHRRWNLYPQYAQGAYGI VFDPRAGRVTQANANWIFGFDESVPDPEFIAFPEKDGYLYRLEGFSGQPLSAYRWSFSVPSRGGKADLSQAQVRITDALS GEPVPVGDLRVGDPAFGLETLTYSVGSIQPNRNYTFEISGIRLNGGPPRSYRYTTALYDCDPQTSQRPAPLTEGLGIPPR LLWQREPFNSFNPLN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37259; Mature: 37128
Theoretical pI: Translated: 7.93; Mature: 7.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPIASFLCRLDRQTRSFTGPIYAEQPQVATCNPGRLTPAAAQKMMDRLNFLRLLHQLPPV CCHHHHHHHHHHHHHHCCCCEEECCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCC KLNPQFLEAAQQAALMQVANGTLSHQPPPSWRCFTPAGEAGSRFSNLAVGPILELNGPDP CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCHHHCEEECCEEECCCCCH GRVLARQVDIYFAEPGRENFVDVGHRRWNLYPQYAQGAYGIVFDPRAGRVTQANANWIFG HHEEEEEEEEEEECCCCCCHHHCCCEEECCCHHHCCCCEEEEECCCCCEEEECCCCEEEE FDESVPDPEFIAFPEKDGYLYRLEGFSGQPLSAYRWSFSVPSRGGKADLSQAQVRITDAL CCCCCCCCCEEEECCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECC SGEPVPVGDLRVGDPAFGLETLTYSVGSIQPNRNYTFEISGIRLNGGPPRSYRYTTALYD CCCCCCCCCEEECCCCCCHHHEEEHHCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEEEE CDPQTSQRPAPLTEGLGIPPRLLWQREPFNSFNPLN CCCCCCCCCCCHHCCCCCCHHHHEECCCCCCCCCCC >Mature Secondary Structure PIASFLCRLDRQTRSFTGPIYAEQPQVATCNPGRLTPAAAQKMMDRLNFLRLLHQLPPV CHHHHHHHHHHHHHHCCCCEEECCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCC KLNPQFLEAAQQAALMQVANGTLSHQPPPSWRCFTPAGEAGSRFSNLAVGPILELNGPDP CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCHHHCEEECCEEECCCCCH GRVLARQVDIYFAEPGRENFVDVGHRRWNLYPQYAQGAYGIVFDPRAGRVTQANANWIFG HHEEEEEEEEEEECCCCCCHHHCCCEEECCCHHHCCCCEEEEECCCCCEEEECCCCEEEE FDESVPDPEFIAFPEKDGYLYRLEGFSGQPLSAYRWSFSVPSRGGKADLSQAQVRITDAL CCCCCCCCCEEEECCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECC SGEPVPVGDLRVGDPAFGLETLTYSVGSIQPNRNYTFEISGIRLNGGPPRSYRYTTALYD CCCCCCCCCEEECCCCCCHHHEEEHHCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEEEE CDPQTSQRPAPLTEGLGIPPRLLWQREPFNSFNPLN CCCCCCCCCCCHHCCCCCCHHHHEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA