| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86607505
Identifier: 86607505
GI number: 86607505
Start: 1493
End: 2317
Strand: Direct
Name: 86607505
Synonym: CYB_0002
Alternate gene names: NA
Gene position: 1493-2317 (Clockwise)
Preceding gene: 86607504
Following gene: 86607509
Centisome position: 0.05
GC content: 59.64
Gene sequence:
>825_bases TTGAGGTGTTGTTGCCGCGCTGTGGAGCACCTCCAGCCTTGCCCGTCTGCGTGGAGAATCCCTCGGAAAGCGGCTACAGT AGGGACGCGATGCATGGGGTTGCAGGCGGTGAGACAGTCTGGCAAAGGGCTTCCCCTGGGTATGCTGCTCCTCTGGGCTG GACTGGTGCCTGGGTGGCCAGTTTGGGCCAATTCCACGCAAGCCAGCATTCAGGATCCGGCGCCGGCCACGCTCTCAGCC GCTTTGGATTTGGGCTTGGATAGCCAACTTTTGGAAGGCAGCCCCGTGTTGCGCCGCTGGCTGCAAAACCCGCCCCATCT CCTGGAAGAAATCCGCAACACCCCTGTCTTGCCCACGCGCTTGCAGGCCGGTTTTGAGTCCTCTTCGCACTGGCGAATCA GCCTACAAGACTTGCGTCTGGGAGATCGCCTCACCCTCAGCGGTGACTATCGCCAATCTTCCGAACATCCCGAAGTGCGC CAGTACGGGTCGGAAATGCGTTACTTTCTGGCCCCCATGGGATCCCGTTTTAATCTGGCGCCACAACTGGGGTATCGGGC TTTGGAACAAAAGAACCGCAGCCTCAGTGGAGTTAGCTATGGGGCTTTTGCTGTTTTGGCCTTGGCTCCGGGAGGTGTAG ATTTGACCGGCAGCTACAGTTGGGTTGCCCCCCAGGAGCCGGAAGAAGGACAGGCCACCCTGGCGGAGCTCACTGCTGCC TACGCCATTAGCCCTTCCTTTCGTCTTTCTGCTCGCTATAGCCTGCGCAACTCGACCCTGGATCGGGAGTTTAGCTTTGG CGTTGGGCTGGAGTGGATCCCATAG
Upstream 100 bases:
>100_bases AGTCTGCAATTTGAACGGCAACTGCAAAAATTGGTCGAGCGCTTGCGGGTGGTTGCCAACAGCCGGAGCAGCTAGGCTTT CTGTTGTCGCTGGGCCGTCT
Downstream 100 bases:
>100_bases AGTGCCCCCTCACTCCTAGTCTCTCTCTTGGTGGAAGAGGGGAGCCAGGGATCGGCATGACTTGGATTGGGGTAATGGCT CCGACATCGACTCGATGGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 274; Mature: 274
Protein sequence:
>274_residues MRCCCRAVEHLQPCPSAWRIPRKAATVGTRCMGLQAVRQSGKGLPLGMLLLWAGLVPGWPVWANSTQASIQDPAPATLSA ALDLGLDSQLLEGSPVLRRWLQNPPHLLEEIRNTPVLPTRLQAGFESSSHWRISLQDLRLGDRLTLSGDYRQSSEHPEVR QYGSEMRYFLAPMGSRFNLAPQLGYRALEQKNRSLSGVSYGAFAVLALAPGGVDLTGSYSWVAPQEPEEGQATLAELTAA YAISPSFRLSARYSLRNSTLDREFSFGVGLEWIP
Sequences:
>Translated_274_residues MRCCCRAVEHLQPCPSAWRIPRKAATVGTRCMGLQAVRQSGKGLPLGMLLLWAGLVPGWPVWANSTQASIQDPAPATLSA ALDLGLDSQLLEGSPVLRRWLQNPPHLLEEIRNTPVLPTRLQAGFESSSHWRISLQDLRLGDRLTLSGDYRQSSEHPEVR QYGSEMRYFLAPMGSRFNLAPQLGYRALEQKNRSLSGVSYGAFAVLALAPGGVDLTGSYSWVAPQEPEEGQATLAELTAA YAISPSFRLSARYSLRNSTLDREFSFGVGLEWIP >Mature_274_residues MRCCCRAVEHLQPCPSAWRIPRKAATVGTRCMGLQAVRQSGKGLPLGMLLLWAGLVPGWPVWANSTQASIQDPAPATLSA ALDLGLDSQLLEGSPVLRRWLQNPPHLLEEIRNTPVLPTRLQAGFESSSHWRISLQDLRLGDRLTLSGDYRQSSEHPEVR QYGSEMRYFLAPMGSRFNLAPQLGYRALEQKNRSLSGVSYGAFAVLALAPGGVDLTGSYSWVAPQEPEEGQATLAELTAA YAISPSFRLSARYSLRNSTLDREFSFGVGLEWIP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30120; Mature: 30120
Theoretical pI: Translated: 8.47; Mature: 8.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRCCCRAVEHLQPCPSAWRIPRKAATVGTRCMGLQAVRQSGKGLPLGMLLLWAGLVPGWP CCHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCC VWANSTQASIQDPAPATLSAALDLGLDSQLLEGSPVLRRWLQNPPHLLEEIRNTPVLPTR CCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHCCCHHHHHHHCCCHHHHHHHHCCCCCCHH LQAGFESSSHWRISLQDLRLGDRLTLSGDYRQSSEHPEVRQYGSEMRYFLAPMGSRFNLA HHHCCCCCCCEEEEEHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC PQLGYRALEQKNRSLSGVSYGAFAVLALAPGGVDLTGSYSWVAPQEPEEGQATLAELTAA HHHHHHHHHHHCCCCCCCCHHHEEEEEECCCCEEECCCEEECCCCCCCCHHHHHHHHHHH YAISPSFRLSARYSLRNSTLDREFSFGVGLEWIP HHCCCCEEEEEEEHHHCCCCCCCCCCCCCCEECC >Mature Secondary Structure MRCCCRAVEHLQPCPSAWRIPRKAATVGTRCMGLQAVRQSGKGLPLGMLLLWAGLVPGWP CCHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCC VWANSTQASIQDPAPATLSAALDLGLDSQLLEGSPVLRRWLQNPPHLLEEIRNTPVLPTR CCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHCCCHHHHHHHCCCHHHHHHHHCCCCCCHH LQAGFESSSHWRISLQDLRLGDRLTLSGDYRQSSEHPEVRQYGSEMRYFLAPMGSRFNLA HHHCCCCCCCEEEEEHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC PQLGYRALEQKNRSLSGVSYGAFAVLALAPGGVDLTGSYSWVAPQEPEEGQATLAELTAA HHHHHHHHHHHCCCCCCCCHHHEEEEEECCCCEEECCCEEECCCCCCCCHHHHHHHHHHH YAISPSFRLSARYSLRNSTLDREFSFGVGLEWIP HHCCCCEEEEEEEHHHCCCCCCCCCCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA