| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86606800
Identifier: 86606800
GI number: 86606800
Start: 2173121
End: 2173669
Strand: Reverse
Name: 86606800
Synonym: CYA_2160
Alternate gene names: NA
Gene position: 2173669-2173121 (Counterclockwise)
Preceding gene: 86606801
Following gene: 86606799
Centisome position: 74.12
GC content: 56.1
Gene sequence:
>549_bases ATGGCGGTAGCTTTCTCCCCACACAGCCCTACTTCTACCCGTACCGGCGAGCTGTACTTACATCTACAGTTGGGGGTAGA CTGTCGGGCCCTTTTGCCCATGGCATTTGCCCAGGAAGCTCTAATTGTTGGCCCGCACCACTTTACCCTTCTCCCCAACC AGCCCGCATGGGTGCTGGGCTTGTTCAACTATCGCAATCGCATTCTCTGGGGACTGGATCTGCCGCAATTTCTCGGCCTA GAGCCCTTGGACTTTGGGCAGCCCGAACACCACTTGGTGGTGATGCGCCCAGAATTTGGGGGCTCTGCATCGCCAGTGCG AACAGGCTTGGGCCTGGCAACCCAACACGTGAAAGGAGTAGCTCGAGTGCCCGCCGAGGAGATCCAACCCTTAACAAAAG CCCAGGCAGCACAAAACAACTTTCGACTGGAGAACTTCTACGACTCTTGCAAAGGGCTGGTGTTGGAAGGGGATGAGCCT CTCTGGGTGCTCGACCCTCTTGCCATTGTCCAAAAGCTCAACTCAGTTGATTCCTCGGCAAACCCTTGA
Upstream 100 bases:
>100_bases CACTCCTGTCCTTGCTGAGCTGCGCCTCCAGTTAGGATCCCTGTGATTATCACGAATTGTTCTTAGGAGATGTCTTAGAA TTGGCAGAGCGAGAACGGCA
Downstream 100 bases:
>100_bases TCTTGATCTTGGCGACCTTTTCCCTGACTTACCCTCACTTAAAGGCAAAATTCTATGGTTTCCTTCCGTCCCCTCTTTCT CAGGCCTGCTCCATCTTCCC
Product: CheW domain-containing protein
Products: NA
Alternate protein names: CheW Domain-Containing Protein
Number of amino acids: Translated: 182; Mature: 181
Protein sequence:
>182_residues MAVAFSPHSPTSTRTGELYLHLQLGVDCRALLPMAFAQEALIVGPHHFTLLPNQPAWVLGLFNYRNRILWGLDLPQFLGL EPLDFGQPEHHLVVMRPEFGGSASPVRTGLGLATQHVKGVARVPAEEIQPLTKAQAAQNNFRLENFYDSCKGLVLEGDEP LWVLDPLAIVQKLNSVDSSANP
Sequences:
>Translated_182_residues MAVAFSPHSPTSTRTGELYLHLQLGVDCRALLPMAFAQEALIVGPHHFTLLPNQPAWVLGLFNYRNRILWGLDLPQFLGL EPLDFGQPEHHLVVMRPEFGGSASPVRTGLGLATQHVKGVARVPAEEIQPLTKAQAAQNNFRLENFYDSCKGLVLEGDEP LWVLDPLAIVQKLNSVDSSANP >Mature_181_residues AVAFSPHSPTSTRTGELYLHLQLGVDCRALLPMAFAQEALIVGPHHFTLLPNQPAWVLGLFNYRNRILWGLDLPQFLGLE PLDFGQPEHHLVVMRPEFGGSASPVRTGLGLATQHVKGVARVPAEEIQPLTKAQAAQNNFRLENFYDSCKGLVLEGDEPL WVLDPLAIVQKLNSVDSSANP
Specific function: Unknown
COG id: COG0835
COG function: function code NT; Chemotaxis signal transduction protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19994; Mature: 19863
Theoretical pI: Translated: 6.14; Mature: 6.14
Prosite motif: PS50851 CHEW
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVAFSPHSPTSTRTGELYLHLQLGVDCRALLPMAFAQEALIVGPHHFTLLPNQPAWVLG CEEEECCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHCCEEEECCCEEEECCCCCEEEEE LFNYRNRILWGLDLPQFLGLEPLDFGQPEHHLVVMRPEFGGSASPVRTGLGLATQHVKGV EECCCCEEEECCCCHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCHHHCCCHHHHHHHHH ARVPAEEIQPLTKAQAAQNNFRLENFYDSCKGLVLEGDEPLWVLDPLAIVQKLNSVDSSA HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCEEEECCCCEEEECHHHHHHHHHHCCCCC NP CC >Mature Secondary Structure AVAFSPHSPTSTRTGELYLHLQLGVDCRALLPMAFAQEALIVGPHHFTLLPNQPAWVLG EEEECCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHCCEEEECCCEEEECCCCCEEEEE LFNYRNRILWGLDLPQFLGLEPLDFGQPEHHLVVMRPEFGGSASPVRTGLGLATQHVKGV EECCCCEEEECCCCHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCHHHCCCHHHHHHHHH ARVPAEEIQPLTKAQAAQNNFRLENFYDSCKGLVLEGDEPLWVLDPLAIVQKLNSVDSSA HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCEEEECCCCEEEECHHHHHHHHHHCCCCC NP CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA