| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86606787
Identifier: 86606787
GI number: 86606787
Start: 2160096
End: 2161619
Strand: Reverse
Name: 86606787
Synonym: CYA_2147
Alternate gene names: NA
Gene position: 2161619-2160096 (Counterclockwise)
Preceding gene: 86606788
Following gene: 86606783
Centisome position: 73.71
GC content: 64.57
Gene sequence:
>1524_bases TTGGGCAAGCTGTGGGTTGGCATGGTGTTGTCGCGCTCCACTTGGCTGTGGTTGTTGACGGGGCTGGGCTTGGCGGCTCT CAGCCAATACCTGCAATGGGTTGAGGGCATCTACAGCTTTGTGGCTCCCTATTCGGTGCCGCTGGCGGATCTGGCGGTGG CCGGCATCCTGGGCGGAACAGTGGCGGCAGGGCTGGTGGCACGCCATTGGTGGCAACAGGTTCGCCGACCGCAACAGGAT CCCACCCCAGCGGCTAAGCCGCGGCGGCGGGTTAAGTTGACGCGGGATCAGGTGCAAGCAGATCTGCAGGATGTCGATCG CCTTATCCAGAAGCTGCAGGACGACATTAGCCGTCGCGCCTTGCAGGCCAAGGCGCGGGAGATCGATCGACGGCTGGCCC AGGAAGAATTGCACCTGGTGGTGTTCGGCACCGCTTCTGCCGGCAAAACCTCTCTCATCAACGCTCTGCTGGGGCAGCCT GTGGGGGAAACCGCTCCCACCCTGGGCACCACCCAGCAGGGATCCATTCACACCTATCAACTGGAGGGCTGGAGTGGCCC CATCTCCCTCACCGATACCCCTGGCCTGCTGACCATCGGCGGCGCCGGCGAGGCGGAGGCCCGCGCCCTGGCCCAGAAGG CGGATCTGTTGATTTTGGTGGTGGCTGGGGATCTGCTGGCCTCAGAATATGCCGAGCTGCTCGAGCTGGCCCGGCTGGGG AAATCCACCATCCTGGCCCTTAACAAGACGGATCAGATGTTGCCGGAGGAGGTGGAGATCATCTTGGCCCACCTGCGCCA GCGCACCGCCGGCGTCATTCCCCCTGAGCAGGTGGTGGCCATTGCCGCCGACCCGGAGCCCTTGAAGGTTCGCTACTGCT TCCCCGATGGCTCCAGACAAGAAACCTGGGAGCCGCAGCCCCCCGATACAGGCGCCCTGGTCCAGCAGATGGCCCGCCTG CTGCAGCAAAAGGGATCCCATCTGCGCCTGGCCAACGCCCTGTTGCAAACCCAAACCTTGAGCGAGGCCGTCCAACAGGC CCTGCGGGAAGAGCGCTACCACCAGGGTCGCCAGATCGTGGAGCGGATGCAGTGGGCCACCGCTGCTGCCCTGGCCGTGA CTCCCCTTCCGGCTTTGGATATGCTGGCGGGGGTGGTCATCCAGGCGCGCATGATCGGGGAGCTGCATCAGGTGTTCGAT CGCCGCATCACCCTGCAGCAGGCTCAACAAATGGCCCACAGCCTGGCGCAAATGATCGTGCAGCTTGGGGGACTGGAGCT GGCCACCCAGGCCCTGGGCTCTGCCCTCAAAGCCAGTCCCTGGATGCTCATGGGGATCCCGCTGCAGGCGGCCAGCGGAG CCTATCTGACGCGGGTGGCGGGGCTGAGCTACCTGGAGTGGCTGCAATCGGGGGATCCCTGGCAAGAGGAGCTCCTGCAA GAGCGGCTCAAGCAGCAGCTTCACAGCCGTTATCCGCTGGCCTTTCTCAAGCAATTGGCTCGCCAAGCCCACTCCAGCAG CTAG
Upstream 100 bases:
>100_bases GTCCTAAATTCGCGAACGCTTCTCTCGCCTTTGCAGATCTCTAGACTAGATAGATCTTCAGGGTTTGCCTGGGGATCAGG ATCTGTTCCCGATTGGGCAT
Downstream 100 bases:
>100_bases CCGAACAGCCCAAGCTCAGCTAGGGCCATTTCAAAAGCAAAAAACCCGTCGCTAGCCCAAAGCAACCCCCTCGGCGGCAT GGCCATTCGCCGGCAACTGG
Product: GTP-binding domain-containing protein
Products: NA
Alternate protein names: Membrane Associated GTPase; GTPase SAR1 And Related Small G Proteins; GTPase SAR1 And Related Small G Protein; GTPase SAR1-Like Protein
Number of amino acids: Translated: 507; Mature: 506
Protein sequence:
>507_residues MGKLWVGMVLSRSTWLWLLTGLGLAALSQYLQWVEGIYSFVAPYSVPLADLAVAGILGGTVAAGLVARHWWQQVRRPQQD PTPAAKPRRRVKLTRDQVQADLQDVDRLIQKLQDDISRRALQAKAREIDRRLAQEELHLVVFGTASAGKTSLINALLGQP VGETAPTLGTTQQGSIHTYQLEGWSGPISLTDTPGLLTIGGAGEAEARALAQKADLLILVVAGDLLASEYAELLELARLG KSTILALNKTDQMLPEEVEIILAHLRQRTAGVIPPEQVVAIAADPEPLKVRYCFPDGSRQETWEPQPPDTGALVQQMARL LQQKGSHLRLANALLQTQTLSEAVQQALREERYHQGRQIVERMQWATAAALAVTPLPALDMLAGVVIQARMIGELHQVFD RRITLQQAQQMAHSLAQMIVQLGGLELATQALGSALKASPWMLMGIPLQAASGAYLTRVAGLSYLEWLQSGDPWQEELLQ ERLKQQLHSRYPLAFLKQLARQAHSSS
Sequences:
>Translated_507_residues MGKLWVGMVLSRSTWLWLLTGLGLAALSQYLQWVEGIYSFVAPYSVPLADLAVAGILGGTVAAGLVARHWWQQVRRPQQD PTPAAKPRRRVKLTRDQVQADLQDVDRLIQKLQDDISRRALQAKAREIDRRLAQEELHLVVFGTASAGKTSLINALLGQP VGETAPTLGTTQQGSIHTYQLEGWSGPISLTDTPGLLTIGGAGEAEARALAQKADLLILVVAGDLLASEYAELLELARLG KSTILALNKTDQMLPEEVEIILAHLRQRTAGVIPPEQVVAIAADPEPLKVRYCFPDGSRQETWEPQPPDTGALVQQMARL LQQKGSHLRLANALLQTQTLSEAVQQALREERYHQGRQIVERMQWATAAALAVTPLPALDMLAGVVIQARMIGELHQVFD RRITLQQAQQMAHSLAQMIVQLGGLELATQALGSALKASPWMLMGIPLQAASGAYLTRVAGLSYLEWLQSGDPWQEELLQ ERLKQQLHSRYPLAFLKQLARQAHSSS >Mature_506_residues GKLWVGMVLSRSTWLWLLTGLGLAALSQYLQWVEGIYSFVAPYSVPLADLAVAGILGGTVAAGLVARHWWQQVRRPQQDP TPAAKPRRRVKLTRDQVQADLQDVDRLIQKLQDDISRRALQAKAREIDRRLAQEELHLVVFGTASAGKTSLINALLGQPV GETAPTLGTTQQGSIHTYQLEGWSGPISLTDTPGLLTIGGAGEAEARALAQKADLLILVVAGDLLASEYAELLELARLGK STILALNKTDQMLPEEVEIILAHLRQRTAGVIPPEQVVAIAADPEPLKVRYCFPDGSRQETWEPQPPDTGALVQQMARLL QQKGSHLRLANALLQTQTLSEAVQQALREERYHQGRQIVERMQWATAAALAVTPLPALDMLAGVVIQARMIGELHQVFDR RITLQQAQQMAHSLAQMIVQLGGLELATQALGSALKASPWMLMGIPLQAASGAYLTRVAGLSYLEWLQSGDPWQEELLQE RLKQQLHSRYPLAFLKQLARQAHSSS
Specific function: Unknown
COG id: COG1100
COG function: function code R; GTPase SAR1 and related small G proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55637; Mature: 55506
Theoretical pI: Translated: 7.86; Mature: 7.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGKLWVGMVLSRSTWLWLLTGLGLAALSQYLQWVEGIYSFVAPYSVPLADLAVAGILGGT CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH VAAGLVARHWWQQVRRPQQDPTPAAKPRRRVKLTRDQVQADLQDVDRLIQKLQDDISRRA HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LQAKAREIDRRLAQEELHLVVFGTASAGKTSLINALLGQPVGETAPTLGTTQQGSIHTYQ HHHHHHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEE LEGWSGPISLTDTPGLLTIGGAGEAEARALAQKADLLILVVAGDLLASEYAELLELARLG ECCCCCCEEECCCCCEEEECCCCCHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHHHCC KSTILALNKTDQMLPEEVEIILAHLRQRTAGVIPPEQVVAIAADPEPLKVRYCFPDGSRQ CHHEEEECCCHHHCHHHHHHHHHHHHHHHCCCCCHHHEEEEECCCCCEEEEEECCCCCCC ETWEPQPPDTGALVQQMARLLQQKGSHLRLANALLQTQTLSEAVQQALREERYHQGRQIV CCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ERMQWATAAALAVTPLPALDMLAGVVIQARMIGELHQVFDRRITLQQAQQMAHSLAQMIV HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QLGGLELATQALGSALKASPWMLMGIPLQAASGAYLTRVAGLSYLEWLQSGDPWQEELLQ HHCCHHHHHHHHHHHHHCCCCEEEECCHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH ERLKQQLHSRYPLAFLKQLARQAHSSS HHHHHHHHCCCCHHHHHHHHHHHCCCC >Mature Secondary Structure GKLWVGMVLSRSTWLWLLTGLGLAALSQYLQWVEGIYSFVAPYSVPLADLAVAGILGGT CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH VAAGLVARHWWQQVRRPQQDPTPAAKPRRRVKLTRDQVQADLQDVDRLIQKLQDDISRRA HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LQAKAREIDRRLAQEELHLVVFGTASAGKTSLINALLGQPVGETAPTLGTTQQGSIHTYQ HHHHHHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEE LEGWSGPISLTDTPGLLTIGGAGEAEARALAQKADLLILVVAGDLLASEYAELLELARLG ECCCCCCEEECCCCCEEEECCCCCHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHHHCC KSTILALNKTDQMLPEEVEIILAHLRQRTAGVIPPEQVVAIAADPEPLKVRYCFPDGSRQ CHHEEEECCCHHHCHHHHHHHHHHHHHHHCCCCCHHHEEEEECCCCCEEEEEECCCCCCC ETWEPQPPDTGALVQQMARLLQQKGSHLRLANALLQTQTLSEAVQQALREERYHQGRQIV CCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ERMQWATAAALAVTPLPALDMLAGVVIQARMIGELHQVFDRRITLQQAQQMAHSLAQMIV HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QLGGLELATQALGSALKASPWMLMGIPLQAASGAYLTRVAGLSYLEWLQSGDPWQEELLQ HHCCHHHHHHHHHHHHHCCCCEEEECCHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH ERLKQQLHSRYPLAFLKQLARQAHSSS HHHHHHHHCCCCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA