Definition Synechococcus sp. JA-3-3Ab, complete genome.
Accession NC_007775
Length 2,932,766

Click here to switch to the map view.

The map label for this gene is 86606630

Identifier: 86606630

GI number: 86606630

Start: 2006475

End: 2007128

Strand: Reverse

Name: 86606630

Synonym: CYA_1987

Alternate gene names: NA

Gene position: 2007128-2006475 (Counterclockwise)

Preceding gene: 86606633

Following gene: 86606629

Centisome position: 68.44

GC content: 58.56

Gene sequence:

>654_bases
ATGACCGCGACCCAAGTTTCTGCCGAAGAGTTGTTTCGGGCCGCCTACGAAAATCGCTACACCTGGGATCCCGACTTTCC
GGGCTACAGCGCCGAGGTCACCTACTGGGATGGGGAGCGCACTTTTGTGGGCCAGGTGCGAGTGGGGGCAGACCTAAAAG
CGACGGTTACGGGCGTGGAGGATGAGGAAGCCCGGAAAGCCATTCACAATCAACTTTGGGAGATTGCCGTTCACCGGGTG
CGCCGCAGCTTCGCCGAGACCCACGGGAACAACACTTTTCGCTATGGCCAGATCCTACCCGATGGCACCGTGGAGATCCT
GGTGGGCGGCAAAGCCGAAGGGGATCGCTACCACGTGCGCGACAACCAAGTTACCATGGTGCATCGGCATATTCACGGTA
TGGTGGTTACTATTCACACCTTCAGCAGCCATGACACGGGCGAAGGCTACCTCTCCCACCGCTACGACTCCGTCTATCAC
GACGCCAAGACTGGCGAGCAGAAGGGTGGGCGCAGCCAATTTGAAGATCTCTACACCAAAGTGGGCAAGTACTATATCCT
CTCGGAGCGGCGCATTCAAACAGAGACGGAAACCGGCCCTGTGGAAAAGCGCTTTACCTTCCGCAACCTGGCGTTGCTGG
ATGCGGGGGCCTGA

Upstream 100 bases:

>100_bases
CAGGTTCCTGCCGCGGGCGGCTAGGGGGATAGCCTGGCAGCAAGGGGCAGTATGATGGATGGTCATGAGAAGCGCTTGCC
AGTAAGACAGGAGACACTCG

Downstream 100 bases:

>100_bases
TTGGCCAAAGGCCAACGGAAAGCCCGATAATCTCATTTGTGGCAGCAACGCCCCCCTTAGATAGAAGAAGTGGGGGATCC
TGAGCTATGCTTTGAGTATT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MTATQVSAEELFRAAYENRYTWDPDFPGYSAEVTYWDGERTFVGQVRVGADLKATVTGVEDEEARKAIHNQLWEIAVHRV
RRSFAETHGNNTFRYGQILPDGTVEILVGGKAEGDRYHVRDNQVTMVHRHIHGMVVTIHTFSSHDTGEGYLSHRYDSVYH
DAKTGEQKGGRSQFEDLYTKVGKYYILSERRIQTETETGPVEKRFTFRNLALLDAGA

Sequences:

>Translated_217_residues
MTATQVSAEELFRAAYENRYTWDPDFPGYSAEVTYWDGERTFVGQVRVGADLKATVTGVEDEEARKAIHNQLWEIAVHRV
RRSFAETHGNNTFRYGQILPDGTVEILVGGKAEGDRYHVRDNQVTMVHRHIHGMVVTIHTFSSHDTGEGYLSHRYDSVYH
DAKTGEQKGGRSQFEDLYTKVGKYYILSERRIQTETETGPVEKRFTFRNLALLDAGA
>Mature_216_residues
TATQVSAEELFRAAYENRYTWDPDFPGYSAEVTYWDGERTFVGQVRVGADLKATVTGVEDEEARKAIHNQLWEIAVHRVR
RSFAETHGNNTFRYGQILPDGTVEILVGGKAEGDRYHVRDNQVTMVHRHIHGMVVTIHTFSSHDTGEGYLSHRYDSVYHD
AKTGEQKGGRSQFEDLYTKVGKYYILSERRIQTETETGPVEKRFTFRNLALLDAGA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24764; Mature: 24632

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTATQVSAEELFRAAYENRYTWDPDFPGYSAEVTYWDGERTFVGQVRVGADLKATVTGVE
CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCEEEEEEEEECCCCEEEEECCC
DEEARKAIHNQLWEIAVHRVRRSFAETHGNNTFRYGQILPDGTVEILVGGKAEGDRYHVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEECCCCCCCEEEEC
DNQVTMVHRHIHGMVVTIHTFSSHDTGEGYLSHRYDSVYHDAKTGEQKGGRSQFEDLYTK
CCCEEEEEEECCEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
VGKYYILSERRIQTETETGPVEKRFTFRNLALLDAGA
HCCEEEEECCEECCCCCCCCCHHHEEEHEEEEEECCC
>Mature Secondary Structure 
TATQVSAEELFRAAYENRYTWDPDFPGYSAEVTYWDGERTFVGQVRVGADLKATVTGVE
CCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCEEEEEEEEECCCCEEEEECCC
DEEARKAIHNQLWEIAVHRVRRSFAETHGNNTFRYGQILPDGTVEILVGGKAEGDRYHVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEECCCCCCCEEEEC
DNQVTMVHRHIHGMVVTIHTFSSHDTGEGYLSHRYDSVYHDAKTGEQKGGRSQFEDLYTK
CCCEEEEEEECCEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
VGKYYILSERRIQTETETGPVEKRFTFRNLALLDAGA
HCCEEEEECCEECCCCCCCCCHHHEEEHEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA