| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86606627
Identifier: 86606627
GI number: 86606627
Start: 2003653
End: 2004384
Strand: Reverse
Name: 86606627
Synonym: CYA_1984
Alternate gene names: NA
Gene position: 2004384-2003653 (Counterclockwise)
Preceding gene: 86606628
Following gene: 86606620
Centisome position: 68.34
GC content: 60.52
Gene sequence:
>732_bases ATGAATATTGAAGAACAGACAAGGATAGAGGTGTTAGCGTGGCTGAACAACCGTCCTATTCTGAGCGCGACGCCGCCTGC GGGCTGGATCTGCTCACCAATGGCGAGGTCACGGTCGCTCAGCTTCTTTCTCAATCCGGCATGTAGCACTCCTGGTTGCG GTAATCTGATGTCTGTTTCCATCCGCTCATTTCCTGCCTGTATCACCCAAGCTGTTGCCGCTCTTGTTGCCGGCGGGCCG CCGAAAGGGACCTTGCGGGGCAAGCTGCGCCAGAGATCCCTGGGGTTGGCTGCCGCTTTGGTTTGGGGTCTGGCTCTCGT TCGGGGGTTGGCAGCCCAGCCGATGTTAAAATCCCCACAAGGCTCCTTCGAGGGGAATGCAGCTCCTGTCCTGCCCTCAG AGTCTGCCTTCCCCACCTCCACCCGCACAGGAGCCTTTCGAGTCGGCAATCGCACCCCTCACCCGATTCGGCTGGTGATC TTGATGCGCAGCGGTGGACGGCTGCTCAACCCGGAAACGGCCCACTGGGACTTTGCGCCCGGAGAAGGGGGCAGCGAGGG GCTGGTGCTGAGTTTGGGCGAGGAGCCATTGCAGATCGGCCCCGGCGATATTGTGGTGGCTTTTACCCTGGATGGAACCG CTCGCTACTGGGGGCCGAACGTGGTGGGAGAGTCGCTGGCGCCCTTTTGGAATGAAGAGAGCGGCTTTTGGTCGATGATC CTGCAGCCTTAG
Upstream 100 bases:
>100_bases CCCGCAAGGGTGGAAATGCCGAGCGGTCAACCCCTAGAAGGATCCCAGCCGACTGCAGGTGGGAGGGGGGAGCGGTTTTC GCCTTCCGAGAGAAGGTTGA
Downstream 100 bases:
>100_bases AGGGCTCTGCGGGCGGCCTAGAAGCCCTTTTCAACCATTTTTGAAATTGCAGCCATTTGGGTTGGGGACAGGATGCTGTA CCCATGGACAAATCTCTGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 243; Mature: 243
Protein sequence:
>243_residues MNIEEQTRIEVLAWLNNRPILSATPPAGWICSPMARSRSLSFFLNPACSTPGCGNLMSVSIRSFPACITQAVAALVAGGP PKGTLRGKLRQRSLGLAAALVWGLALVRGLAAQPMLKSPQGSFEGNAAPVLPSESAFPTSTRTGAFRVGNRTPHPIRLVI LMRSGGRLLNPETAHWDFAPGEGGSEGLVLSLGEEPLQIGPGDIVVAFTLDGTARYWGPNVVGESLAPFWNEESGFWSMI LQP
Sequences:
>Translated_243_residues MNIEEQTRIEVLAWLNNRPILSATPPAGWICSPMARSRSLSFFLNPACSTPGCGNLMSVSIRSFPACITQAVAALVAGGP PKGTLRGKLRQRSLGLAAALVWGLALVRGLAAQPMLKSPQGSFEGNAAPVLPSESAFPTSTRTGAFRVGNRTPHPIRLVI LMRSGGRLLNPETAHWDFAPGEGGSEGLVLSLGEEPLQIGPGDIVVAFTLDGTARYWGPNVVGESLAPFWNEESGFWSMI LQP >Mature_243_residues MNIEEQTRIEVLAWLNNRPILSATPPAGWICSPMARSRSLSFFLNPACSTPGCGNLMSVSIRSFPACITQAVAALVAGGP PKGTLRGKLRQRSLGLAAALVWGLALVRGLAAQPMLKSPQGSFEGNAAPVLPSESAFPTSTRTGAFRVGNRTPHPIRLVI LMRSGGRLLNPETAHWDFAPGEGGSEGLVLSLGEEPLQIGPGDIVVAFTLDGTARYWGPNVVGESLAPFWNEESGFWSMI LQP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25770; Mature: 25770
Theoretical pI: Translated: 8.68; Mature: 8.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIEEQTRIEVLAWLNNRPILSATPPAGWICSPMARSRSLSFFLNPACSTPGCGNLMSVS CCCCHHHHEEEEEEECCCCEEEECCCCCCEECCHHHCCCEEEEECCCCCCCCCCCEEEEH IRSFPACITQAVAALVAGGPPKGTLRGKLRQRSLGLAAALVWGLALVRGLAAQPMLKSPQ HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC GSFEGNAAPVLPSESAFPTSTRTGAFRVGNRTPHPIRLVILMRSGGRLLNPETAHWDFAP CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEEECCCEECCCCCCCCCCCC GEGGSEGLVLSLGEEPLQIGPGDIVVAFTLDGTARYWGPNVVGESLAPFWNEESGFWSMI CCCCCCCEEEEECCCCCEECCCCEEEEEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEE LQP ECC >Mature Secondary Structure MNIEEQTRIEVLAWLNNRPILSATPPAGWICSPMARSRSLSFFLNPACSTPGCGNLMSVS CCCCHHHHEEEEEEECCCCEEEECCCCCCEECCHHHCCCEEEEECCCCCCCCCCCEEEEH IRSFPACITQAVAALVAGGPPKGTLRGKLRQRSLGLAAALVWGLALVRGLAAQPMLKSPQ HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC GSFEGNAAPVLPSESAFPTSTRTGAFRVGNRTPHPIRLVILMRSGGRLLNPETAHWDFAP CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEEECCCEECCCCCCCCCCCC GEGGSEGLVLSLGEEPLQIGPGDIVVAFTLDGTARYWGPNVVGESLAPFWNEESGFWSMI CCCCCCCEEEEECCCCCEECCCCEEEEEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEE LQP ECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA