Definition Synechococcus sp. JA-3-3Ab, complete genome.
Accession NC_007775
Length 2,932,766

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The map label for this gene is 86606627

Identifier: 86606627

GI number: 86606627

Start: 2003653

End: 2004384

Strand: Reverse

Name: 86606627

Synonym: CYA_1984

Alternate gene names: NA

Gene position: 2004384-2003653 (Counterclockwise)

Preceding gene: 86606628

Following gene: 86606620

Centisome position: 68.34

GC content: 60.52

Gene sequence:

>732_bases
ATGAATATTGAAGAACAGACAAGGATAGAGGTGTTAGCGTGGCTGAACAACCGTCCTATTCTGAGCGCGACGCCGCCTGC
GGGCTGGATCTGCTCACCAATGGCGAGGTCACGGTCGCTCAGCTTCTTTCTCAATCCGGCATGTAGCACTCCTGGTTGCG
GTAATCTGATGTCTGTTTCCATCCGCTCATTTCCTGCCTGTATCACCCAAGCTGTTGCCGCTCTTGTTGCCGGCGGGCCG
CCGAAAGGGACCTTGCGGGGCAAGCTGCGCCAGAGATCCCTGGGGTTGGCTGCCGCTTTGGTTTGGGGTCTGGCTCTCGT
TCGGGGGTTGGCAGCCCAGCCGATGTTAAAATCCCCACAAGGCTCCTTCGAGGGGAATGCAGCTCCTGTCCTGCCCTCAG
AGTCTGCCTTCCCCACCTCCACCCGCACAGGAGCCTTTCGAGTCGGCAATCGCACCCCTCACCCGATTCGGCTGGTGATC
TTGATGCGCAGCGGTGGACGGCTGCTCAACCCGGAAACGGCCCACTGGGACTTTGCGCCCGGAGAAGGGGGCAGCGAGGG
GCTGGTGCTGAGTTTGGGCGAGGAGCCATTGCAGATCGGCCCCGGCGATATTGTGGTGGCTTTTACCCTGGATGGAACCG
CTCGCTACTGGGGGCCGAACGTGGTGGGAGAGTCGCTGGCGCCCTTTTGGAATGAAGAGAGCGGCTTTTGGTCGATGATC
CTGCAGCCTTAG

Upstream 100 bases:

>100_bases
CCCGCAAGGGTGGAAATGCCGAGCGGTCAACCCCTAGAAGGATCCCAGCCGACTGCAGGTGGGAGGGGGGAGCGGTTTTC
GCCTTCCGAGAGAAGGTTGA

Downstream 100 bases:

>100_bases
AGGGCTCTGCGGGCGGCCTAGAAGCCCTTTTCAACCATTTTTGAAATTGCAGCCATTTGGGTTGGGGACAGGATGCTGTA
CCCATGGACAAATCTCTGCC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MNIEEQTRIEVLAWLNNRPILSATPPAGWICSPMARSRSLSFFLNPACSTPGCGNLMSVSIRSFPACITQAVAALVAGGP
PKGTLRGKLRQRSLGLAAALVWGLALVRGLAAQPMLKSPQGSFEGNAAPVLPSESAFPTSTRTGAFRVGNRTPHPIRLVI
LMRSGGRLLNPETAHWDFAPGEGGSEGLVLSLGEEPLQIGPGDIVVAFTLDGTARYWGPNVVGESLAPFWNEESGFWSMI
LQP

Sequences:

>Translated_243_residues
MNIEEQTRIEVLAWLNNRPILSATPPAGWICSPMARSRSLSFFLNPACSTPGCGNLMSVSIRSFPACITQAVAALVAGGP
PKGTLRGKLRQRSLGLAAALVWGLALVRGLAAQPMLKSPQGSFEGNAAPVLPSESAFPTSTRTGAFRVGNRTPHPIRLVI
LMRSGGRLLNPETAHWDFAPGEGGSEGLVLSLGEEPLQIGPGDIVVAFTLDGTARYWGPNVVGESLAPFWNEESGFWSMI
LQP
>Mature_243_residues
MNIEEQTRIEVLAWLNNRPILSATPPAGWICSPMARSRSLSFFLNPACSTPGCGNLMSVSIRSFPACITQAVAALVAGGP
PKGTLRGKLRQRSLGLAAALVWGLALVRGLAAQPMLKSPQGSFEGNAAPVLPSESAFPTSTRTGAFRVGNRTPHPIRLVI
LMRSGGRLLNPETAHWDFAPGEGGSEGLVLSLGEEPLQIGPGDIVVAFTLDGTARYWGPNVVGESLAPFWNEESGFWSMI
LQP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25770; Mature: 25770

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIEEQTRIEVLAWLNNRPILSATPPAGWICSPMARSRSLSFFLNPACSTPGCGNLMSVS
CCCCHHHHEEEEEEECCCCEEEECCCCCCEECCHHHCCCEEEEECCCCCCCCCCCEEEEH
IRSFPACITQAVAALVAGGPPKGTLRGKLRQRSLGLAAALVWGLALVRGLAAQPMLKSPQ
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GSFEGNAAPVLPSESAFPTSTRTGAFRVGNRTPHPIRLVILMRSGGRLLNPETAHWDFAP
CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEEECCCEECCCCCCCCCCCC
GEGGSEGLVLSLGEEPLQIGPGDIVVAFTLDGTARYWGPNVVGESLAPFWNEESGFWSMI
CCCCCCCEEEEECCCCCEECCCCEEEEEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEE
LQP
ECC
>Mature Secondary Structure
MNIEEQTRIEVLAWLNNRPILSATPPAGWICSPMARSRSLSFFLNPACSTPGCGNLMSVS
CCCCHHHHEEEEEEECCCCEEEECCCCCCEECCHHHCCCEEEEECCCCCCCCCCCEEEEH
IRSFPACITQAVAALVAGGPPKGTLRGKLRQRSLGLAAALVWGLALVRGLAAQPMLKSPQ
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GSFEGNAAPVLPSESAFPTSTRTGAFRVGNRTPHPIRLVILMRSGGRLLNPETAHWDFAP
CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEEECCCEECCCCCCCCCCCC
GEGGSEGLVLSLGEEPLQIGPGDIVVAFTLDGTARYWGPNVVGESLAPFWNEESGFWSMI
CCCCCCCEEEEECCCCCEECCCCEEEEEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEE
LQP
ECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA