Definition Synechococcus sp. JA-3-3Ab, complete genome.
Accession NC_007775
Length 2,932,766

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The map label for this gene is 86606587

Identifier: 86606587

GI number: 86606587

Start: 1951778

End: 1952932

Strand: Reverse

Name: 86606587

Synonym: CYA_1941

Alternate gene names: NA

Gene position: 1952932-1951778 (Counterclockwise)

Preceding gene: 86606588

Following gene: 86606586

Centisome position: 66.59

GC content: 63.2

Gene sequence:

>1155_bases
ATGGAAAGAACTCTAGAAGAAATTAACCGGCGCATTGCCAAAGGCCAGGTGCGGGTGTGGACGGCCCTGGAAGCCAAGGC
CAAGCTGGCCACCCTCAGCCTTGAGGAGGCCTTTGAGCAGGTGGATGTGGTAACCACGGGCACCTTTGAGCCGATGGAGT
CGTCGGGGGCCATCCTCAACCTGGGCCATACGGATCCGCCGATCAAGATTCGCCAGGCTTGGCTAAATGGGGTGCCCGCC
TATGCCGGCTTTGGCGCCGTGGATCTTTACCTAGGGGCAGCCCAGCCCAGCGAGCAAGCCGATCACCCCTACGGGGGCGG
CCACGTTATCGCCGATCTGGTGGCCGGCAAGCGGGTGCACCTGCGGGCTGTTGGCCAGGTAACCGACTGCTATCCCCGCG
CTGACTACGAGACCACCCTGACGCGGGATCAGCTCAACCAGTTCTACCTGTTCAACCCCCGCAACGCCTACCAAAACTTC
ATTGTCGGCGTCAACGGCGGGGATCGGCCCCTGTACACCTATTTGGGCCTGCTGGAGCCGCACCTGGGCAATGCCGTCTA
TTCCAATCCAGGTGAGCTCTCCCCCCTCCTCAACGACCCCCTCCTGCGCCGGGTGGGGATCGGCAGCCGCATCTTTCTGG
GGGGCGGCATCGGCTACATCGCCTGGGAAGGCACCCAACACTTCCCGCGGCAAAAACGGCTGCCCAACCAAACCCCCATC
GGCCCTGCCGCCACCTTGGCCCTCATTGGCGACGCCAAACAGATGCAAGCCGAATGGGTGCGGGGCTGCTACTTCCGCAA
CTACGGCCCCAGCTTGATGTTGGGGGTTGGGATCCCCATCCCCATCCTTTCCCCCGCCGATCTGGAGCCCATCGCCATCC
GGGATGAGGAGCTGGTGGCGCCGGTGATCGACTTTTCCATCCCCCGGCGGGTGCGCCCCACCTTTGGCCTGGTGAGCTAT
GCCCAGCTCAAATCCGGCCACATCACCCTCAACGGCCGCAAGGTGCGCACCGCTCCCCTGGCCAGCCTGCGCCGCTCGAT
GCAAGTTGCTGAGATCCTCAAACAATGGATTGTAAGCGGTCAGTTTACGCTCACCCAGCCGGTTGCTCCCCTATCCTTGG
ATCGGGAGTTTCTCGCCCAGAACCCCCACCCATAG

Upstream 100 bases:

>100_bases
CCTCGAGCGCCTTTGGGCTCTCTAAGCTATTGATATTGATTGGCGCTGTGGCCCCTCTGGGAGGGAGATCTGCCCAGACC
CTTGCCATCTTTTGAAGGCG

Downstream 100 bases:

>100_bases
TAGGAATCCCCATCTCCCAAACCGGCCATCGGATCCCTGGCAAGGGGTTGTCTTCCAGGCAGTTGCCGCTACCATTACGC
CTTAGGTGTTGCCGACAAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MERTLEEINRRIAKGQVRVWTALEAKAKLATLSLEEAFEQVDVVTTGTFEPMESSGAILNLGHTDPPIKIRQAWLNGVPA
YAGFGAVDLYLGAAQPSEQADHPYGGGHVIADLVAGKRVHLRAVGQVTDCYPRADYETTLTRDQLNQFYLFNPRNAYQNF
IVGVNGGDRPLYTYLGLLEPHLGNAVYSNPGELSPLLNDPLLRRVGIGSRIFLGGGIGYIAWEGTQHFPRQKRLPNQTPI
GPAATLALIGDAKQMQAEWVRGCYFRNYGPSLMLGVGIPIPILSPADLEPIAIRDEELVAPVIDFSIPRRVRPTFGLVSY
AQLKSGHITLNGRKVRTAPLASLRRSMQVAEILKQWIVSGQFTLTQPVAPLSLDREFLAQNPHP

Sequences:

>Translated_384_residues
MERTLEEINRRIAKGQVRVWTALEAKAKLATLSLEEAFEQVDVVTTGTFEPMESSGAILNLGHTDPPIKIRQAWLNGVPA
YAGFGAVDLYLGAAQPSEQADHPYGGGHVIADLVAGKRVHLRAVGQVTDCYPRADYETTLTRDQLNQFYLFNPRNAYQNF
IVGVNGGDRPLYTYLGLLEPHLGNAVYSNPGELSPLLNDPLLRRVGIGSRIFLGGGIGYIAWEGTQHFPRQKRLPNQTPI
GPAATLALIGDAKQMQAEWVRGCYFRNYGPSLMLGVGIPIPILSPADLEPIAIRDEELVAPVIDFSIPRRVRPTFGLVSY
AQLKSGHITLNGRKVRTAPLASLRRSMQVAEILKQWIVSGQFTLTQPVAPLSLDREFLAQNPHP
>Mature_384_residues
MERTLEEINRRIAKGQVRVWTALEAKAKLATLSLEEAFEQVDVVTTGTFEPMESSGAILNLGHTDPPIKIRQAWLNGVPA
YAGFGAVDLYLGAAQPSEQADHPYGGGHVIADLVAGKRVHLRAVGQVTDCYPRADYETTLTRDQLNQFYLFNPRNAYQNF
IVGVNGGDRPLYTYLGLLEPHLGNAVYSNPGELSPLLNDPLLRRVGIGSRIFLGGGIGYIAWEGTQHFPRQKRLPNQTPI
GPAATLALIGDAKQMQAEWVRGCYFRNYGPSLMLGVGIPIPILSPADLEPIAIRDEELVAPVIDFSIPRRVRPTFGLVSY
AQLKSGHITLNGRKVRTAPLASLRRSMQVAEILKQWIVSGQFTLTQPVAPLSLDREFLAQNPHP

Specific function: Unknown

COG id: COG1900

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000644
- InterPro:   IPR002708
- InterPro:   IPR016426
- ProDom:   PD011569 [H]

Pfam domain/function: PF00571 CBS; PF01837 DUF39 [H]

EC number: NA

Molecular weight: Translated: 42218; Mature: 42218

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERTLEEINRRIAKGQVRVWTALEAKAKLATLSLEEAFEQVDVVTTGTFEPMESSGAILN
CCHHHHHHHHHHHCCCEEEEEEECCHHHHHEEEHHHHHHHHCEEECCCCCCCCCCCCEEE
LGHTDPPIKIRQAWLNGVPAYAGFGAVDLYLGAAQPSEQADHPYGGGHVIADLVAGKRVH
CCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCEEE
LRAVGQVTDCYPRADYETTLTRDQLNQFYLFNPRNAYQNFIVGVNGGDRPLYTYLGLLEP
EEEECCHHHCCCCCCCCHHHHHHHCCEEEEECCCCCCCCEEEECCCCCCHHHHHHHHHCC
HLGNAVYSNPGELSPLLNDPLLRRVGIGSRIFLGGGIGYIAWEGTQHFPRQKRLPNQTPI
CCCCCEECCCCCCCHHHCCHHHHHHCCCCEEEEECCEEEEEECCCCCCCHHHCCCCCCCC
GPAATLALIGDAKQMQAEWVRGCYFRNYGPSLMLGVGIPIPILSPADLEPIAIRDEELVA
CHHHHEEECCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEECCHHHHH
PVIDFSIPRRVRPTFGLVSYAQLKSGHITLNGRKVRTAPLASLRRSMQVAEILKQWIVSG
HHHCCCCCCCCCCCHHHHHHHHHCCCEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHCC
QFTLTQPVAPLSLDREFLAQNPHP
CEEEECCCCCCCCCHHHHCCCCCC
>Mature Secondary Structure
MERTLEEINRRIAKGQVRVWTALEAKAKLATLSLEEAFEQVDVVTTGTFEPMESSGAILN
CCHHHHHHHHHHHCCCEEEEEEECCHHHHHEEEHHHHHHHHCEEECCCCCCCCCCCCEEE
LGHTDPPIKIRQAWLNGVPAYAGFGAVDLYLGAAQPSEQADHPYGGGHVIADLVAGKRVH
CCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCEEE
LRAVGQVTDCYPRADYETTLTRDQLNQFYLFNPRNAYQNFIVGVNGGDRPLYTYLGLLEP
EEEECCHHHCCCCCCCCHHHHHHHCCEEEEECCCCCCCCEEEECCCCCCHHHHHHHHHCC
HLGNAVYSNPGELSPLLNDPLLRRVGIGSRIFLGGGIGYIAWEGTQHFPRQKRLPNQTPI
CCCCCEECCCCCCCHHHCCHHHHHHCCCCEEEEECCEEEEEECCCCCCCHHHCCCCCCCC
GPAATLALIGDAKQMQAEWVRGCYFRNYGPSLMLGVGIPIPILSPADLEPIAIRDEELVA
CHHHHEEECCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEECCHHHHH
PVIDFSIPRRVRPTFGLVSYAQLKSGHITLNGRKVRTAPLASLRRSMQVAEILKQWIVSG
HHHCCCCCCCCCCCHHHHHHHHHCCCEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHCC
QFTLTQPVAPLSLDREFLAQNPHP
CEEEECCCCCCCCCHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]