Click here to switch to the map view.

The map label for this gene is psbA-2

Identifier: 86606403

GI number: 86606403

Start: 1753541

End: 1754599

Strand: Reverse

Name: psbA-2

Synonym: CYA_1748

Alternate gene names: 86606403

Gene position: 1754599-1753541 (Counterclockwise)

Preceding gene: 86606404

Following gene: 86606398

Centisome position: 59.83

GC content: 61.38

Gene sequence:

>1059_bases
ATGAGTGTGGTTGTTCGGCGCTCCGCTGCCGCACGGCGGCTATGGAGCTGGGAAAGTTTTTGTCAATGGATCACTAGCAC
CGAAAATCGGCTTTACATCGGCTGGTTTGGCGTATTGATGATCCCGACCTTGTTGGCGGCAACCTTTTGTTTTGTGATTG
CCTTCATTGCTGCGCCACCGGTGGATGTGGACGGGATCCGCGAGCCGGTGATTGGCTCCCTGCTGGGTGGCAACAACCTC
ATTTCTGCGGCGGTGGTGCCCACCTCAGCCGCCATCGCCTTGCACTTCTACCCCATCTGGGAAGCTGCCTCTTTGGAGGA
GTGGCTCTACAACGGCGGCCCCTACCAGCTCATCGTGTTTCACTTCCTCATCGGGGTGTGGTGCTACCTGGGCCGGCAGT
GGGAGCTGAGCTATCGCTTGGGCATGCGTCCCTGGATTGCGGTGGCGTTTTCCGCTCCGGCGGCGGCGGCTACGGCAGTG
CTCCTGGTCTACCCCATTGGCCAGGGCAGTTTCTCAGAGGGGCTGCCGCTAGGGATTGCCGGCACCTTCTACTTCATGCT
GGCTTTCCAGGCGGAGCACAATATCCTCATGCACCCTGCTAGCTGGCTGGGGGTGGCCGGCGTCTTTGGCGGCGCTCTGC
TGGCCTCCCTGCACGGCTCCCTGGTGATCTCCAGCCTAATCCGCGAGACCTCGGAAGAAGAGTCACAAAATGCCGGCTAC
CGCTTTGGCCAGCAGGAGGTCACCTACAACTTCCTGGCCGGCCACTACGCCTTCTTGGGGCGGTTGGGGATCCCCAGCCT
TGGCTGGCGCAACAGCCGCTCTGTCCACTTCTGGATGGCGGCCCTGCCTACCTTAGGGATCTGGGCGGCGGCAATCGGCA
TCGGCCTCATGGCCTTTAACCTCAATGGCTTTAACTTCAACCAGTCCATCCTGGACAGCCAAGGCCGGTTCATCCCTACC
TACGCCGATCTCCTCAACCGCGCCAACTTGGGGATCCAGGCCATGCACGCCCCCAATGCCCACCACTTCCCCCTGTTGCT
GGCGGCCAAAGCGGACTAG

Upstream 100 bases:

>100_bases
AGGAGAAGAATCCCCAGGACAAGGCTGAGTCATTTCCTGAGGTCACTCTGCCAAGCGCAAGTGGAAGAAAGCTCTCTTCA
AATTTTCTAGGAGTTGGCCT

Downstream 100 bases:

>100_bases
GGTTGGCTCCGTCTTTAGCCGGTGTGCCCGGTATAGCAAGGAGCAACTACCTGCAGCTCGCGGGGAAGTCACGCCTGTGG
AGATCCCTCTGGCGGGGTAG

Product: photosystem II protein D1

Products: NA

Alternate protein names: 32 kDa thylakoid membrane protein 2; Photosystem II protein D1 2

Number of amino acids: Translated: 352; Mature: 351

Protein sequence:

>352_residues
MSVVVRRSAAARRLWSWESFCQWITSTENRLYIGWFGVLMIPTLLAATFCFVIAFIAAPPVDVDGIREPVIGSLLGGNNL
ISAAVVPTSAAIALHFYPIWEAASLEEWLYNGGPYQLIVFHFLIGVWCYLGRQWELSYRLGMRPWIAVAFSAPAAAATAV
LLVYPIGQGSFSEGLPLGIAGTFYFMLAFQAEHNILMHPASWLGVAGVFGGALLASLHGSLVISSLIRETSEEESQNAGY
RFGQQEVTYNFLAGHYAFLGRLGIPSLGWRNSRSVHFWMAALPTLGIWAAAIGIGLMAFNLNGFNFNQSILDSQGRFIPT
YADLLNRANLGIQAMHAPNAHHFPLLLAAKAD

Sequences:

>Translated_352_residues
MSVVVRRSAAARRLWSWESFCQWITSTENRLYIGWFGVLMIPTLLAATFCFVIAFIAAPPVDVDGIREPVIGSLLGGNNL
ISAAVVPTSAAIALHFYPIWEAASLEEWLYNGGPYQLIVFHFLIGVWCYLGRQWELSYRLGMRPWIAVAFSAPAAAATAV
LLVYPIGQGSFSEGLPLGIAGTFYFMLAFQAEHNILMHPASWLGVAGVFGGALLASLHGSLVISSLIRETSEEESQNAGY
RFGQQEVTYNFLAGHYAFLGRLGIPSLGWRNSRSVHFWMAALPTLGIWAAAIGIGLMAFNLNGFNFNQSILDSQGRFIPT
YADLLNRANLGIQAMHAPNAHHFPLLLAAKAD
>Mature_351_residues
SVVVRRSAAARRLWSWESFCQWITSTENRLYIGWFGVLMIPTLLAATFCFVIAFIAAPPVDVDGIREPVIGSLLGGNNLI
SAAVVPTSAAIALHFYPIWEAASLEEWLYNGGPYQLIVFHFLIGVWCYLGRQWELSYRLGMRPWIAVAFSAPAAAATAVL
LVYPIGQGSFSEGLPLGIAGTFYFMLAFQAEHNILMHPASWLGVAGVFGGALLASLHGSLVISSLIRETSEEESQNAGYR
FGQQEVTYNFLAGHYAFLGRLGIPSLGWRNSRSVHFWMAALPTLGIWAAAIGIGLMAFNLNGFNFNQSILDSQGRFIPTY
ADLLNRANLGIQAMHAPNAHHFPLLLAAKAD

Specific function: This is one of the two reaction center proteins of photosystem II

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the reaction center pufL/M/psbA/D family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSBA2_SYNJA (Q2JTT0)

Other databases:

- EMBL:   CP000239
- RefSeq:   YP_475166.1
- ProteinModelPortal:   Q2JTT0
- SMR:   Q2JTT0
- STRING:   Q2JTT0
- GeneID:   3898542
- GenomeReviews:   CP000239_GR
- KEGG:   cya:CYA_1748
- TIGR:   CYA_1748
- eggNOG:   NOG04871
- HOGENOM:   HBG284766
- OMA:   GQGSFSE
- ProtClustDB:   CLSK892431
- BioCyc:   SSP321327:CYA_1748-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_01379
- InterPro:   IPR000484
- InterPro:   IPR005867
- Gene3D:   G3DSA:1.20.85.10
- TIGRFAMs:   TIGR01151

Pfam domain/function: PF00124 Photo_RC; SSF81483 Photo_RC_L/M

EC number: NA

Molecular weight: Translated: 38485; Mature: 38354

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: PS00244 REACTION_CENTER

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x152d4534)-; HASH(0x15829630)-; HASH(0x15277538)-; HASH(0x139cf93c)-; HASH(0x14e3177c)-;

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVVVRRSAAARRLWSWESFCQWITSTENRLYIGWFGVLMIPTLLAATFCFVIAFIAAPP
CCEEEECHHHHHHHHCHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCC
VDVDGIREPVIGSLLGGNNLISAAVVPTSAAIALHFYPIWEAASLEEWLYNGGPYQLIVF
CCCCCCHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEECCCCCCHHHHHHCCCCHHHHHH
HFLIGVWCYLGRQWELSYRLGMRPWIAVAFSAPAAAATAVLLVYPIGQGSFSEGLPLGIA
HHHHHHHHHHCCEEEEEEECCCCCEEEEEECCCHHHHEEEEEEEECCCCCCCCCCCCCHH
GTFYFMLAFQAEHNILMHPASWLGVAGVFGGALLASLHGSLVISSLIRETSEEESQNAGY
HHHHHHHHEECCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RFGQQEVTYNFLAGHYAFLGRLGIPSLGWRNSRSVHFWMAALPTLGIWAAAIGIGLMAFN
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHEEEEE
LNGFNFNQSILDSQGRFIPTYADLLNRANLGIQAMHAPNAHHFPLLLAAKAD
CCCCCCCHHHHCCCCCEECHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCH
>Mature Secondary Structure 
SVVVRRSAAARRLWSWESFCQWITSTENRLYIGWFGVLMIPTLLAATFCFVIAFIAAPP
CEEEECHHHHHHHHCHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCC
VDVDGIREPVIGSLLGGNNLISAAVVPTSAAIALHFYPIWEAASLEEWLYNGGPYQLIVF
CCCCCCHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEECCCCCCHHHHHHCCCCHHHHHH
HFLIGVWCYLGRQWELSYRLGMRPWIAVAFSAPAAAATAVLLVYPIGQGSFSEGLPLGIA
HHHHHHHHHHCCEEEEEEECCCCCEEEEEECCCHHHHEEEEEEEECCCCCCCCCCCCCHH
GTFYFMLAFQAEHNILMHPASWLGVAGVFGGALLASLHGSLVISSLIRETSEEESQNAGY
HHHHHHHHEECCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RFGQQEVTYNFLAGHYAFLGRLGIPSLGWRNSRSVHFWMAALPTLGIWAAAIGIGLMAFN
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHEEEEE
LNGFNFNQSILDSQGRFIPTYADLLNRANLGIQAMHAPNAHHFPLLLAAKAD
CCCCCCCHHHHCCCCCEECHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA