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The map label for this gene is psbV

Identifier: 86606342

GI number: 86606342

Start: 1685534

End: 1686058

Strand: Reverse

Name: psbV

Synonym: CYA_1686

Alternate gene names: 86606342

Gene position: 1686058-1685534 (Counterclockwise)

Preceding gene: 86606343

Following gene: 86606341

Centisome position: 57.49

GC content: 62.67

Gene sequence:

>525_bases
ATGCCTGGGCAAACTCAAGGGGCAAAGCGGTGGCGGGTCCCGGGCCGTGGCTGGAGGTGGGCCGGGATCCTGCTTCTGGT
ATGGCTAGGGCTAGCTAGCCCAGCAGCAGGCCGCATTGATCCTTACGTGAGCCACTATCTGCGAACCACTGAGCCGATAG
AGCTGCCCTGGGATGCGGAAGGGCACATGCTCACCTTTACTCCAGAGCAACTTACCGACGGGAAAAATCGCTTTCAGTCC
GCCTGTCTGAACTGCCACGTGGGTGGCTCTACCCTACCGGCCCCCAACATTTCCCTGTCGCTCAAGGACTTGCGCGGCGC
CACCCCACCCCGCGACACCATTCAAGCCTTGGTGGAGTACCAACGGGATCCCCGCAGCTACGATGGCACCGAGGTTAGCT
ATGGCTGCCGCCCCGTGCCCCCCTCCTGGATGGATGATGAAGCGCTGCGCAACCTGGCTGCCTTTATCCTCAGGGCGGCT
CAAGTGGCTCCGGGCTGGGGATCCAACGCAATCGGAGGTGGCTGA

Upstream 100 bases:

>100_bases
TGAAGTTAATTGCCGGCTACATCCTAGTGCAGGCTAAGACCGTGCCCGGCTGGGGCGGCACCAAGAGCGAATCCCACAGT
GACCTTTCGGCCTATCTCTG

Downstream 100 bases:

>100_bases
GGAGTCGGGGTTTCCTCCGCCGCTCCTTGCAGGGGTGGTGGTAGCCTGGTGAAGAGGGAAGGTGGCGGCCATGCTCCAGA
ATATCCGCTCCATACTCCTG

Product: cytochrome c-550

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 173

Protein sequence:

>174_residues
MPGQTQGAKRWRVPGRGWRWAGILLLVWLGLASPAAGRIDPYVSHYLRTTEPIELPWDAEGHMLTFTPEQLTDGKNRFQS
ACLNCHVGGSTLPAPNISLSLKDLRGATPPRDTIQALVEYQRDPRSYDGTEVSYGCRPVPPSWMDDEALRNLAAFILRAA
QVAPGWGSNAIGGG

Sequences:

>Translated_174_residues
MPGQTQGAKRWRVPGRGWRWAGILLLVWLGLASPAAGRIDPYVSHYLRTTEPIELPWDAEGHMLTFTPEQLTDGKNRFQS
ACLNCHVGGSTLPAPNISLSLKDLRGATPPRDTIQALVEYQRDPRSYDGTEVSYGCRPVPPSWMDDEALRNLAAFILRAA
QVAPGWGSNAIGGG
>Mature_173_residues
PGQTQGAKRWRVPGRGWRWAGILLLVWLGLASPAAGRIDPYVSHYLRTTEPIELPWDAEGHMLTFTPEQLTDGKNRFQSA
CLNCHVGGSTLPAPNISLSLKDLRGATPPRDTIQALVEYQRDPRSYDGTEVSYGCRPVPPSWMDDEALRNLAAFILRAAQ
VAPGWGSNAIGGG

Specific function: Possible low-potential cytochrome c (Potential)

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Lumenal side (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family. PsbV subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSBV2_SYNJA (Q2JTY7)

Other databases:

- EMBL:   CP000239
- RefSeq:   YP_475105.1
- ProteinModelPortal:   Q2JTY7
- SMR:   Q2JTY7
- STRING:   Q2JTY7
- GeneID:   3897530
- GenomeReviews:   CP000239_GR
- KEGG:   cya:CYA_1686
- TIGR:   CYA_1686
- eggNOG:   NOG42755
- HOGENOM:   HBG285698
- OMA:   NCKNCHV
- ProtClustDB:   PRK13621
- BioCyc:   SSP321327:CYA_1686-MONOMER
- GO:   GO:0015979
- GO:   GO:0006810
- HAMAP:   MF_01378
- InterPro:   IPR009056
- InterPro:   IPR016003
- InterPro:   IPR017490
- Gene3D:   G3DSA:1.10.760.10
- PIRSF:   PIRSF005890
- TIGRFAMs:   TIGR03046

Pfam domain/function: SSF46626 Cytochrome_c

EC number: NA

Molecular weight: Translated: 19022; Mature: 18891

Theoretical pI: Translated: 8.06; Mature: 8.06

Prosite motif: PS51007 CYTC

Important sites: BINDING 82-82 BINDING 85-85

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGQTQGAKRWRVPGRGWRWAGILLLVWLGLASPAAGRIDPYVSHYLRTTEPIELPWDAE
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
GHMLTFTPEQLTDGKNRFQSACLNCHVGGSTLPAPNISLSLKDLRGATPPRDTIQALVEY
CCEEEECHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHCCCCCCHHHHHHHHHH
QRDPRSYDGTEVSYGCRPVPPSWMDDEALRNLAAFILRAAQVAPGWGSNAIGGG
HCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
PGQTQGAKRWRVPGRGWRWAGILLLVWLGLASPAAGRIDPYVSHYLRTTEPIELPWDAE
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
GHMLTFTPEQLTDGKNRFQSACLNCHVGGSTLPAPNISLSLKDLRGATPPRDTIQALVEY
CCEEEECHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHCCCCCCHHHHHHHHHH
QRDPRSYDGTEVSYGCRPVPPSWMDDEALRNLAAFILRAAQVAPGWGSNAIGGG
HCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA