| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is eda
Identifier: 86606285
GI number: 86606285
Start: 1628283
End: 1629023
Strand: Reverse
Name: eda
Synonym: CYA_1625
Alternate gene names: 86606285
Gene position: 1629023-1628283 (Counterclockwise)
Preceding gene: 86606287
Following gene: 86606284
Centisome position: 55.55
GC content: 62.89
Gene sequence:
>741_bases ATGGTGTTTGAGGGTTCTGAACAGAGCTTCAGAGAGGGATGGCGGCACCCCTGGCTACTCCATTTGTGGCAGCAGCCCCT GATCGCGGTGATCCGCCTCTCGGCCAGCCCGGCCCAAGCCCTTGAGGGATCCACCCTGGCCATCCGGGCCGGGATCCGCC ACATTGAGATCACTCCCCAAGTTCCCCGGTATCTGGAGTTGATTGCCCAACTGCGGCAAGACTACCCGCATTGCTGGGTA GGGGTGGGCACGGTTTTAAATCGGCAGATGGCAGAGCAGGCTTGGCAGGCGGGAGCCCAATTCTATGTTTGCCCCTTTGC GGACGAGAGCATCATCCGCTGGGGTCGGGAAGCAGGGCTGCCCATTGTGCCCGGCGCCCTCACCCCCGGCGAGATCTGGA GGGCCTGGCAGGCCGGGGCAACGGCAGTAAAGGTGTTTCCGGCAGAAAGCCTTGGCGGATCCCGTTACCTGCGCCATCTG CAACCGGTGCTGGGATCCCTGCCTTTGATCCCAACTGGGGGGGTTACCTTGGCCAATGCAGCAGAATATCTGCAGGCAGG GGCCTGGGCTGTCGGCATCGCCGGGGATCTCTTCCCGGCGGAGCTTCTTTCCCAGCAAGGGGTTGATCCAGACAGTTGCC GGCAAGAGCTGGAAAATCGGCTGCGGCAAACGCTACAACAGCTTGCCAGCCAGAGGGTCGCCGCAGCCTGGCCCGAACTT CCGGGTGAACCCCCAGAGTAG
Upstream 100 bases:
>100_bases CATTGTTTTACCGTCGGGCTGTTTGGTTATTTTTAATTGCAATTAAACTTAAAATCAACCCAAGCAAGGTAGAAATCGAT GAGAGAGGGCTTTTCCACAG
Downstream 100 bases:
>100_bases GGGGCGCGTTGACGCTCCCCGCACTTGAGTGGGGAGATGGCCGAGCACCCTGGCAGCAAACTTTGGAGGGCGCTGCCCAG CCGCACCCCCGACATCCCTC
Product: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase
Products: NA
Alternate protein names: KDPG-aldolase; Phospho-2-dehydro-3-deoxygluconate aldolase; Phospho-2-keto-3-deoxygluconate aldolase [H]
Number of amino acids: Translated: 246; Mature: 246
Protein sequence:
>246_residues MVFEGSEQSFREGWRHPWLLHLWQQPLIAVIRLSASPAQALEGSTLAIRAGIRHIEITPQVPRYLELIAQLRQDYPHCWV GVGTVLNRQMAEQAWQAGAQFYVCPFADESIIRWGREAGLPIVPGALTPGEIWRAWQAGATAVKVFPAESLGGSRYLRHL QPVLGSLPLIPTGGVTLANAAEYLQAGAWAVGIAGDLFPAELLSQQGVDPDSCRQELENRLRQTLQQLASQRVAAAWPEL PGEPPE
Sequences:
>Translated_246_residues MVFEGSEQSFREGWRHPWLLHLWQQPLIAVIRLSASPAQALEGSTLAIRAGIRHIEITPQVPRYLELIAQLRQDYPHCWV GVGTVLNRQMAEQAWQAGAQFYVCPFADESIIRWGREAGLPIVPGALTPGEIWRAWQAGATAVKVFPAESLGGSRYLRHL QPVLGSLPLIPTGGVTLANAAEYLQAGAWAVGIAGDLFPAELLSQQGVDPDSCRQELENRLRQTLQQLASQRVAAAWPEL PGEPPE >Mature_246_residues MVFEGSEQSFREGWRHPWLLHLWQQPLIAVIRLSASPAQALEGSTLAIRAGIRHIEITPQVPRYLELIAQLRQDYPHCWV GVGTVLNRQMAEQAWQAGAQFYVCPFADESIIRWGREAGLPIVPGALTPGEIWRAWQAGATAVKVFPAESLGGSRYLRHL QPVLGSLPLIPTGGVTLANAAEYLQAGAWAVGIAGDLFPAELLSQQGVDPDSCRQELENRLRQTLQQLASQRVAAAWPEL PGEPPE
Specific function: KEY ENZYME IN THE ENTNER-DOUDOROFF PATHWAY. PARTICIPATES IN THE REGULATION OF THE INTRACELLULAR LEVEL OF GLYOXYLATE. [C]
COG id: COG0800
COG function: function code G; 2-keto-3-deoxy-6-phosphogluconate aldolase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the KHG/KDPG aldolase family [H]
Homologues:
Organism=Escherichia coli, GI48994954, Length=182, Percent_Identity=32.967032967033, Blast_Score=85, Evalue=4e-18, Organism=Escherichia coli, GI1788156, Length=163, Percent_Identity=31.9018404907975, Blast_Score=84, Evalue=1e-17,
Paralogues:
None
Copy number: 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000887 - InterPro: IPR013785 [H]
Pfam domain/function: PF01081 Aldolase [H]
EC number: =4.1.2.14 [H]
Molecular weight: Translated: 27047; Mature: 27047
Theoretical pI: Translated: 5.64; Mature: 5.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVFEGSEQSFREGWRHPWLLHLWQQPLIAVIRLSASPAQALEGSTLAIRAGIRHIEITPQ CCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCEEEEECCCEEEEECCC VPRYLELIAQLRQDYPHCWVGVGTVLNRQMAEQAWQAGAQFYVCPFADESIIRWGREAGL CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCC PIVPGALTPGEIWRAWQAGATAVKVFPAESLGGSRYLRHLQPVLGSLPLIPTGGVTLANA CCCCCCCCHHHHHHHHHCCCCEEEEECCHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHH AEYLQAGAWAVGIAGDLFPAELLSQQGVDPDSCRQELENRLRQTLQQLASQRVAAAWPEL HHHHHHCCEEEECCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC PGEPPE CCCCCC >Mature Secondary Structure MVFEGSEQSFREGWRHPWLLHLWQQPLIAVIRLSASPAQALEGSTLAIRAGIRHIEITPQ CCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCEEEEECCCEEEEECCC VPRYLELIAQLRQDYPHCWVGVGTVLNRQMAEQAWQAGAQFYVCPFADESIIRWGREAGL CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCC PIVPGALTPGEIWRAWQAGATAVKVFPAESLGGSRYLRHLQPVLGSLPLIPTGGVTLANA CCCCCCCCHHHHHHHHHCCCCEEEEECCHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHH AEYLQAGAWAVGIAGDLFPAELLSQQGVDPDSCRQELENRLRQTLQQLASQRVAAAWPEL HHHHHHCCEEEECCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC PGEPPE CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 6988426; 7161801; 974067 [H]