| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86606231
Identifier: 86606231
GI number: 86606231
Start: 1576088
End: 1577257
Strand: Reverse
Name: 86606231
Synonym: CYA_1566
Alternate gene names: NA
Gene position: 1577257-1576088 (Counterclockwise)
Preceding gene: 86606240
Following gene: 86606225
Centisome position: 53.78
GC content: 65.73
Gene sequence:
>1170_bases ATGAATCCACAGAATTTGTCGCGGGTGCTGTGCCTGAGCAATGGCCACGGGGAAGATGAGGTGGGCAGTCGCATCGCCCT GGCCCTGACCGGCCTGGGGATCTCGGTGCAAGCCCTGCCGATTGTGGGGGAAGGCACCGCCTATTGCCGCCGCGGCATCC CGCTGCTGCCCCTGACCCAGGTGATGCCTTCAGGGGGATTTATCTATCAAGATTGGCGGCAGTTGTGGCGGGATCTGCGC GCTGGCTTGCTGGGCCTGACGGGGCGGCAACTGGCTTTGGTTCGCCGGGCGGCGGCTCAGGTCGAGCTGGTGCTGGCGGT GGGGGACATTGTGCCTTTGTTAATGGCCTGGTGGAGCGGCAGCCCCTACGTCTTCGTGGGCACAGCCAAGTCGGACTATT ATTGGCGGGACGAACAAGGGCCCTACCGACGCGCTTGGCTGGGACAGCCGGTTTCCGATTACCTGCCCTGGGAGCGCTGG CTCATGGCCCGCAGGCGCTGTCGCGGCTCCTTCTTGCGAGATGAGCTGACGGCCACCGCTCTGCAAAAACGGGGCCTCCG GGCTTTCTACCTGGGCAACCCGATGATGGATGACCTGGAGCCGCGGGGAGAATTGCCTTTGGATCCCGACCGGCCCGCGG TGCTGCTGCTGCCGGGATCCCGCCCGCCGGAAGCCTACCGCAACTGGGCCTTGATGATGCAGGTGGTAGAGCAACTGCCG CCGGAAATCCAAGTTTACGCCGCCCTCAGCCCTAACCTGGAGCGGAACCCCCTTCAAGAGCGGATCCCTGCTCGACGCCG CGACCTGCTCCTGGTGTGGGGAGATTTTGGCACCTGTGCTCACCGGGCAACAGCGGTGCTGGCCATGGCGGGGACGGCCA CGGAACAATGCGTGGGCCTAGGGAAGCCGGTGGTCACCCTGCCGGGGGAGGGGCCGCAATTTACCCCCCGCTTTGCCGAA GCTCAAACCCGTCTCCTGGGATCCGCAGTCCACCTCACTTCACCCCAGCAGGCCCCTGCCGTGCTCTGCCGGATTCTGAG CCGCCTGGCCAGCGATCCCGCTTACGCCGACCAACTGCGAGCCCACGGGCAGCGGCGTATGGGATCCCCTGGCGCTGCTC AGCGCATTGCCGCCCAGATTAAAGCCTGGCTCCCCAACCCCGCTGGCTAA
Upstream 100 bases:
>100_bases TCTATTTTAAGAAGAGATTTTTGGTAAGCTACAGGGTTCTGCTCGTTTAGCTCGAATGGAGGCGGCAACACCCCAGAGTT GAACTCCCATCCTCTACCCA
Downstream 100 bases:
>100_bases GTCCGCCCCACCCTCTCCATCAAGTCGTCCAGCTCTGCGTAGTCCGGCAGCGCCGTGTCGATGGGCTGACCTTGGCGCAG CACCACCCGGTCGTGCTGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 389; Mature: 389
Protein sequence:
>389_residues MNPQNLSRVLCLSNGHGEDEVGSRIALALTGLGISVQALPIVGEGTAYCRRGIPLLPLTQVMPSGGFIYQDWRQLWRDLR AGLLGLTGRQLALVRRAAAQVELVLAVGDIVPLLMAWWSGSPYVFVGTAKSDYYWRDEQGPYRRAWLGQPVSDYLPWERW LMARRRCRGSFLRDELTATALQKRGLRAFYLGNPMMDDLEPRGELPLDPDRPAVLLLPGSRPPEAYRNWALMMQVVEQLP PEIQVYAALSPNLERNPLQERIPARRRDLLLVWGDFGTCAHRATAVLAMAGTATEQCVGLGKPVVTLPGEGPQFTPRFAE AQTRLLGSAVHLTSPQQAPAVLCRILSRLASDPAYADQLRAHGQRRMGSPGAAQRIAAQIKAWLPNPAG
Sequences:
>Translated_389_residues MNPQNLSRVLCLSNGHGEDEVGSRIALALTGLGISVQALPIVGEGTAYCRRGIPLLPLTQVMPSGGFIYQDWRQLWRDLR AGLLGLTGRQLALVRRAAAQVELVLAVGDIVPLLMAWWSGSPYVFVGTAKSDYYWRDEQGPYRRAWLGQPVSDYLPWERW LMARRRCRGSFLRDELTATALQKRGLRAFYLGNPMMDDLEPRGELPLDPDRPAVLLLPGSRPPEAYRNWALMMQVVEQLP PEIQVYAALSPNLERNPLQERIPARRRDLLLVWGDFGTCAHRATAVLAMAGTATEQCVGLGKPVVTLPGEGPQFTPRFAE AQTRLLGSAVHLTSPQQAPAVLCRILSRLASDPAYADQLRAHGQRRMGSPGAAQRIAAQIKAWLPNPAG >Mature_389_residues MNPQNLSRVLCLSNGHGEDEVGSRIALALTGLGISVQALPIVGEGTAYCRRGIPLLPLTQVMPSGGFIYQDWRQLWRDLR AGLLGLTGRQLALVRRAAAQVELVLAVGDIVPLLMAWWSGSPYVFVGTAKSDYYWRDEQGPYRRAWLGQPVSDYLPWERW LMARRRCRGSFLRDELTATALQKRGLRAFYLGNPMMDDLEPRGELPLDPDRPAVLLLPGSRPPEAYRNWALMMQVVEQLP PEIQVYAALSPNLERNPLQERIPARRRDLLLVWGDFGTCAHRATAVLAMAGTATEQCVGLGKPVVTLPGEGPQFTPRFAE AQTRLLGSAVHLTSPQQAPAVLCRILSRLASDPAYADQLRAHGQRRMGSPGAAQRIAAQIKAWLPNPAG
Specific function: Unknown
COG id: COG4370
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42932; Mature: 42932
Theoretical pI: Translated: 9.69; Mature: 9.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNPQNLSRVLCLSNGHGEDEVGSRIALALTGLGISVQALPIVGEGTAYCRRGIPLLPLTQ CCCHHCCEEEEECCCCCCHHHHCEEEEEEECCCCEEEEEEEECCCHHHHHCCCCCCCHHH VMPSGGFIYQDWRQLWRDLRAGLLGLTGRQLALVRRAAAQVELVLAVGDIVPLLMAWWSG HCCCCCEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC SPYVFVGTAKSDYYWRDEQGPYRRAWLGQPVSDYLPWERWLMARRRCRGSFLRDELTATA CCEEEEECCCCCCEECCCCCCHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH LQKRGLRAFYLGNPMMDDLEPRGELPLDPDRPAVLLLPGSRPPEAYRNWALMMQVVEQLP HHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCC PEIQVYAALSPNLERNPLQERIPARRRDLLLVWGDFGTCAHRATAVLAMAGTATEQCVGL CCEEEEEEECCCCCCCCHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCHHHHHHC GKPVVTLPGEGPQFTPRFAEAQTRLLGSAVHLTSPQQAPAVLCRILSRLASDPAYADQLR CCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH AHGQRRMGSPGAAQRIAAQIKAWLPNPAG HHHHHHCCCCCHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MNPQNLSRVLCLSNGHGEDEVGSRIALALTGLGISVQALPIVGEGTAYCRRGIPLLPLTQ CCCHHCCEEEEECCCCCCHHHHCEEEEEEECCCCEEEEEEEECCCHHHHHCCCCCCCHHH VMPSGGFIYQDWRQLWRDLRAGLLGLTGRQLALVRRAAAQVELVLAVGDIVPLLMAWWSG HCCCCCEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC SPYVFVGTAKSDYYWRDEQGPYRRAWLGQPVSDYLPWERWLMARRRCRGSFLRDELTATA CCEEEEECCCCCCEECCCCCCHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH LQKRGLRAFYLGNPMMDDLEPRGELPLDPDRPAVLLLPGSRPPEAYRNWALMMQVVEQLP HHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCC PEIQVYAALSPNLERNPLQERIPARRRDLLLVWGDFGTCAHRATAVLAMAGTATEQCVGL CCEEEEEEECCCCCCCCHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCHHHHHHC GKPVVTLPGEGPQFTPRFAEAQTRLLGSAVHLTSPQQAPAVLCRILSRLASDPAYADQLR CCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH AHGQRRMGSPGAAQRIAAQIKAWLPNPAG HHHHHHCCCCCHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA