| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86606213
Identifier: 86606213
GI number: 86606213
Start: 1558160
End: 1559056
Strand: Reverse
Name: 86606213
Synonym: CYA_1549
Alternate gene names: NA
Gene position: 1559056-1558160 (Counterclockwise)
Preceding gene: 86606214
Following gene: 86606212
Centisome position: 53.16
GC content: 60.2
Gene sequence:
>897_bases ATGTTCAAAAGCCTGTTGATCGCCACCGATTGCCGCGATGGACTGCAGCGTTTTGGCAAATGCCTAGAAGAGCTTTACCT GAATGGGATTGAGCGCGTTGCCTTTGTGCATAGCGTCGCTCGGCAGGACGACGACATTGGCCTTCCCGAAGACCTCACCC CCAAAGTGCAGGCGCAACAGGCTCGCTTACACAAGGTGTTGAGCGCCGTTCCTGCAGGGCTGGAAGTCGAAGTCTTGGTG CAGGCGGGCAAGGCGGTGGATCTGATTTTAAGAGGGATCCAAACCTGCAGCTCCGACTTGCTAATCACAGGCATGGGGAT CCACGATCTGCTCACCGAAAAACTGTTTGGAAGCACCACCTTGGAGCTGCTGCCGAAGCTGACCATCCCGGTAATGGTGA TGCGTCCGCAACTCATCGCCGCCTTTACTCTGGAAGAATTGCGCCTGCGCAGCCGCCACCTATTTCGCTCCCTCCTAGTG CCTTTTGACTTTGAGGAGCCCCGCCGGCAGCTCCTCAGCCGTCTTGGCCAACTGCTGCCAGGAACTTCCCAGTGTCAGGC CATTACGCTGCTCTATGTGGTGGATCCCAGCGCCCGCCGCAACCAGGGATCGCCGGCAGAAGAGCTCAAGCGCAGGGCCG AGGCCGACTTGGCCCGGTTAGTCGAACCGCTGGTCGAGCAGGTAAAACCGGTGCAGTTGCGGGCCTTGGTGCGGGTGGGA TCCCCGCTTCAGGAAATCCTAGCCACCGCCGCCGATGAGGACATGACCGCCATTGCCACCGCCTCGCCGCGGGTGGGCAG CTTCTGGGAGTGGTCGGTTCGCAGCCTCACTGGCGAGATCCTGCGGCAAAGTTGGCATCCGGTGTTGTTTTTCCCGCGCG GGTCTTTGGCCCAGTAG
Upstream 100 bases:
>100_bases GACTCCTTTCAAGGACAGGTCCGGGGTGCGAGGTGTTAGCCTGAGATTGCCCCCCTAGGGCAGGTCGCTGTTGCTGGCTA CCCCCTCTGCCTAAAGCCAT
Downstream 100 bases:
>100_bases AGCCGCTCCATCCCCTTGCTATGCCCGACCCAACCCAAACCTTGTGGGAACTGTTCCAAGCGGTGGCCCAAGGGCAGCTC TCTGCCGAGCAAGCCCTGCA
Product: universal stress protein
Products: NA
Alternate protein names: Universal Stress Protein; Universal Stress Protein Family; UspA Domain-Containing Protein; Universal Stress Protein Family Protein
Number of amino acids: Translated: 298; Mature: 298
Protein sequence:
>298_residues MFKSLLIATDCRDGLQRFGKCLEELYLNGIERVAFVHSVARQDDDIGLPEDLTPKVQAQQARLHKVLSAVPAGLEVEVLV QAGKAVDLILRGIQTCSSDLLITGMGIHDLLTEKLFGSTTLELLPKLTIPVMVMRPQLIAAFTLEELRLRSRHLFRSLLV PFDFEEPRRQLLSRLGQLLPGTSQCQAITLLYVVDPSARRNQGSPAEELKRRAEADLARLVEPLVEQVKPVQLRALVRVG SPLQEILATAADEDMTAIATASPRVGSFWEWSVRSLTGEILRQSWHPVLFFPRGSLAQ
Sequences:
>Translated_298_residues MFKSLLIATDCRDGLQRFGKCLEELYLNGIERVAFVHSVARQDDDIGLPEDLTPKVQAQQARLHKVLSAVPAGLEVEVLV QAGKAVDLILRGIQTCSSDLLITGMGIHDLLTEKLFGSTTLELLPKLTIPVMVMRPQLIAAFTLEELRLRSRHLFRSLLV PFDFEEPRRQLLSRLGQLLPGTSQCQAITLLYVVDPSARRNQGSPAEELKRRAEADLARLVEPLVEQVKPVQLRALVRVG SPLQEILATAADEDMTAIATASPRVGSFWEWSVRSLTGEILRQSWHPVLFFPRGSLAQ >Mature_298_residues MFKSLLIATDCRDGLQRFGKCLEELYLNGIERVAFVHSVARQDDDIGLPEDLTPKVQAQQARLHKVLSAVPAGLEVEVLV QAGKAVDLILRGIQTCSSDLLITGMGIHDLLTEKLFGSTTLELLPKLTIPVMVMRPQLIAAFTLEELRLRSRHLFRSLLV PFDFEEPRRQLLSRLGQLLPGTSQCQAITLLYVVDPSARRNQGSPAEELKRRAEADLARLVEPLVEQVKPVQLRALVRVG SPLQEILATAADEDMTAIATASPRVGSFWEWSVRSLTGEILRQSWHPVLFFPRGSLAQ
Specific function: Unknown
COG id: COG0589
COG function: function code T; Universal stress protein UspA and related nucleotide-binding proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33156; Mature: 33156
Theoretical pI: Translated: 7.04; Mature: 7.04
Prosite motif: PS01039 SBP_BACTERIAL_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFKSLLIATDCRDGLQRFGKCLEELYLNGIERVAFVHSVARQDDDIGLPEDLTPKVQAQQ CCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH ARLHKVLSAVPAGLEVEVLVQAGKAVDLILRGIQTCSSDLLITGMGIHDLLTEKLFGSTT HHHHHHHHHCCCCCEEHHHHHCCHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHCCHH LELLPKLTIPVMVMRPQLIAAFTLEELRLRSRHLFRSLLVPFDFEEPRRQLLSRLGQLLP HHHHHHHCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC GTSQCQAITLLYVVDPSARRNQGSPAEELKRRAEADLARLVEPLVEQVKPVQLRALVRVG CCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC SPLQEILATAADEDMTAIATASPRVGSFWEWSVRSLTGEILRQSWHPVLFFPRGSLAQ CHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC >Mature Secondary Structure MFKSLLIATDCRDGLQRFGKCLEELYLNGIERVAFVHSVARQDDDIGLPEDLTPKVQAQQ CCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH ARLHKVLSAVPAGLEVEVLVQAGKAVDLILRGIQTCSSDLLITGMGIHDLLTEKLFGSTT HHHHHHHHHCCCCCEEHHHHHCCHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHCCHH LELLPKLTIPVMVMRPQLIAAFTLEELRLRSRHLFRSLLVPFDFEEPRRQLLSRLGQLLP HHHHHHHCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC GTSQCQAITLLYVVDPSARRNQGSPAEELKRRAEADLARLVEPLVEQVKPVQLRALVRVG CCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC SPLQEILATAADEDMTAIATASPRVGSFWEWSVRSLTGEILRQSWHPVLFFPRGSLAQ CHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA