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The map label for this gene is ctaD

Identifier: 86606179

GI number: 86606179

Start: 1521127

End: 1522836

Strand: Reverse

Name: ctaD

Synonym: CYA_1513

Alternate gene names: 86606179

Gene position: 1522836-1521127 (Counterclockwise)

Preceding gene: 86606180

Following gene: 86606178

Centisome position: 51.92

GC content: 59.36

Gene sequence:

>1710_bases
ATGACCCAGCTACAGGACAATCCCACCCTTGCCGCTGCCCCCAAAGCCAGCCTGGATCCTCCCGCCGAGCCTTGGTGGCG
CTTTTTTACCTTCTCCACCGATCACAAGGTCATTGGGATCCAGTATTTGGTGACCACCTTTTTCTTCTACTTGGTGGGGG
GAGCGCTGGCCACAGCGGTACGGGCGGAGCTGGCTACCCCAGAGGCGGACTTTCTCGGCTTTGAGCGCTACAACGGGGCC
TTTACCCTGCACGCCACGATCATGATCTTTTTGTGGATCGTGCCGGCTTTGATGGGGGGCTTTGGCAACTACCTGGTGCC
GCTGATGATCGGGGCGCGGGACATGGCCTTTCCCAAGCTGAACGCCGTCGCCTTTTGGCTGGTTCCACCCAGTGGCCTTT
TGCTGCTGGCCAGCTTGTTTATCGAGGCCCCCTCAGCTGGCTGGACCTCGTATCCGCCGCTGAGCCTCATCAGTGGCAAG
GTGGGAGAAGAGCTCTGGATCTTGAGCATTTTGCTGGCCGGAACCTCTTCGATCCTGGGGGCCGTGAACTTCATCACCAC
CATCCTCAAGATGCGCCTGCCCGGCATGAAGATGGAGGGTATGCCCTTGTTCTGCTGGGCGATGCTGGCCGCTTCCATCA
TCACGCTCATTGCAACGCCGGTTCTGGCGGGGGCGCTGATCCTGCTCAGCTTTGACCTGTTGGCGGGCACGGCTTTCTTC
AACCCCAGCGGCGGCGGGGATCCGGTGGTGTACCAGCACATGTTCTGGTTTTACTCCCACCCGGCGGTGTACATCATGGT
TTTGCCGGTGTTCGGCATGATCTCGGAGATCTTGCCGGTGCACGCCCGCAAGCCCATCTTTGCCTACAAAGCCATTGCCT
ACTCCAGCTTGGCCATCTGTTTTTTGGGCTTGATTGTCTGGGTTCACCACATGTTTACCAGCGGCACTCCCGACTGGATG
CGGGTGTTTTTCATGATCGCCACCATGGCCATTGCCGTTCCCACCGGGATCAAGGTGTTTAGCTGGCTGGCGACTCTCTG
GGGCGGCAAGATCCACTTCCGCTCGGCCATGTTGTTTGGCATGGGCTTTATCTCCATGTTCGTCATCGGCGGCTTGAGCG
GGATCATCCTTGCTTCGGTGCCGTTGGATATCCACGTCCACGACACCTACTTTGTGGTGGCCCACCTACACTACGTGTTG
TTTGGCGGCAGCGTCTTTGGCATCTATGCCGGCCTCTACCACTGGTTCCCCAAGATGACCGGGCGGCTGCTGAACGAGTT
CTGGGGGCGGGTGCATTTTGTGTTGACCTTTGTCGGCTTCAACATGTGCTTTTTGCCGATGCACAAGCTGGGCCTGATGG
GCATGCCCCGCCGCGTGGCCCAGTACGACCCGCAATTTGCCGACCTCAACTGGATTAGCTCCGTGGGGGCTTTTGTTCTA
GCCATTTCCACGCTGCCCTTCTTGGTGAACGCCATCTACTCCTGGGTGGCCGGGCCCAAGGCCGGCGACAACCCCTGGCA
GGCTCTAACCCTGGAGTGGGCGACTTCTTCCCCGCCGCCTGCCCACAACTTCTACGGGGATCCCATTCTGCTGACCGGCC
CCTACGACTACGGCCTGCACAGCAAGGAGACTTTGGATTACTTTGCCGCCCAGTTGCAGAGCTTGCGGGAGCTGGCGTTG
GCGGAAGCAGAGCCTACGACTTCTTCTTAG

Upstream 100 bases:

>100_bases
AAGTTCACCGGCAACGTTTGGGCCTCTCGCCGGCTGAGCTGGCCTCTCTCCAACTCCCCCTTGACGCACATTCTGGTGAC
GCCAGTAGGAGCTTCTTGCC

Downstream 100 bases:

>100_bases
CAGGGGGTCTCCATCTTCTACTCACCGGGCATTCCAGTCTTGATCCCGGCTGGGCTGGCCACACCGTCTCAGGAATTCTA
AGGTTCGATTGGTTTATTTT

Product: cytochrome c oxidase, subunit I

Products: NA

Alternate protein names: Cytochrome aa3 subunit 1; Cytochrome c oxidase polypeptide I; Oxidase aa(3) subunit 1 [H]

Number of amino acids: Translated: 569; Mature: 568

Protein sequence:

>569_residues
MTQLQDNPTLAAAPKASLDPPAEPWWRFFTFSTDHKVIGIQYLVTTFFFYLVGGALATAVRAELATPEADFLGFERYNGA
FTLHATIMIFLWIVPALMGGFGNYLVPLMIGARDMAFPKLNAVAFWLVPPSGLLLLASLFIEAPSAGWTSYPPLSLISGK
VGEELWILSILLAGTSSILGAVNFITTILKMRLPGMKMEGMPLFCWAMLAASIITLIATPVLAGALILLSFDLLAGTAFF
NPSGGGDPVVYQHMFWFYSHPAVYIMVLPVFGMISEILPVHARKPIFAYKAIAYSSLAICFLGLIVWVHHMFTSGTPDWM
RVFFMIATMAIAVPTGIKVFSWLATLWGGKIHFRSAMLFGMGFISMFVIGGLSGIILASVPLDIHVHDTYFVVAHLHYVL
FGGSVFGIYAGLYHWFPKMTGRLLNEFWGRVHFVLTFVGFNMCFLPMHKLGLMGMPRRVAQYDPQFADLNWISSVGAFVL
AISTLPFLVNAIYSWVAGPKAGDNPWQALTLEWATSSPPPAHNFYGDPILLTGPYDYGLHSKETLDYFAAQLQSLRELAL
AEAEPTTSS

Sequences:

>Translated_569_residues
MTQLQDNPTLAAAPKASLDPPAEPWWRFFTFSTDHKVIGIQYLVTTFFFYLVGGALATAVRAELATPEADFLGFERYNGA
FTLHATIMIFLWIVPALMGGFGNYLVPLMIGARDMAFPKLNAVAFWLVPPSGLLLLASLFIEAPSAGWTSYPPLSLISGK
VGEELWILSILLAGTSSILGAVNFITTILKMRLPGMKMEGMPLFCWAMLAASIITLIATPVLAGALILLSFDLLAGTAFF
NPSGGGDPVVYQHMFWFYSHPAVYIMVLPVFGMISEILPVHARKPIFAYKAIAYSSLAICFLGLIVWVHHMFTSGTPDWM
RVFFMIATMAIAVPTGIKVFSWLATLWGGKIHFRSAMLFGMGFISMFVIGGLSGIILASVPLDIHVHDTYFVVAHLHYVL
FGGSVFGIYAGLYHWFPKMTGRLLNEFWGRVHFVLTFVGFNMCFLPMHKLGLMGMPRRVAQYDPQFADLNWISSVGAFVL
AISTLPFLVNAIYSWVAGPKAGDNPWQALTLEWATSSPPPAHNFYGDPILLTGPYDYGLHSKETLDYFAAQLQSLRELAL
AEAEPTTSS
>Mature_568_residues
TQLQDNPTLAAAPKASLDPPAEPWWRFFTFSTDHKVIGIQYLVTTFFFYLVGGALATAVRAELATPEADFLGFERYNGAF
TLHATIMIFLWIVPALMGGFGNYLVPLMIGARDMAFPKLNAVAFWLVPPSGLLLLASLFIEAPSAGWTSYPPLSLISGKV
GEELWILSILLAGTSSILGAVNFITTILKMRLPGMKMEGMPLFCWAMLAASIITLIATPVLAGALILLSFDLLAGTAFFN
PSGGGDPVVYQHMFWFYSHPAVYIMVLPVFGMISEILPVHARKPIFAYKAIAYSSLAICFLGLIVWVHHMFTSGTPDWMR
VFFMIATMAIAVPTGIKVFSWLATLWGGKIHFRSAMLFGMGFISMFVIGGLSGIILASVPLDIHVHDTYFVVAHLHYVLF
GGSVFGIYAGLYHWFPKMTGRLLNEFWGRVHFVLTFVGFNMCFLPMHKLGLMGMPRRVAQYDPQFADLNWISSVGAFVLA
ISTLPFLVNAIYSWVAGPKAGDNPWQALTLEWATSSPPPAHNFYGDPILLTGPYDYGLHSKETLDYFAAQLQSLRELALA
EAEPTTSS

Specific function: Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome

COG id: COG0843

COG function: function code C; Heme/copper-type cytochrome/quinol oxidases, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the heme-copper respiratory oxidase family [H]

Homologues:

Organism=Homo sapiens, GI251831109, Length=502, Percent_Identity=47.609561752988, Blast_Score=408, Evalue=1e-114,
Organism=Escherichia coli, GI1786634, Length=509, Percent_Identity=42.6326129666012, Blast_Score=388, Evalue=1e-109,
Organism=Saccharomyces cerevisiae, GI6226519, Length=521, Percent_Identity=41.4587332053743, Blast_Score=404, Evalue=1e-113,
Organism=Saccharomyces cerevisiae, GI6226524, Length=318, Percent_Identity=43.7106918238994, Blast_Score=268, Evalue=2e-72,
Organism=Saccharomyces cerevisiae, GI6226523, Length=246, Percent_Identity=40.2439024390244, Blast_Score=175, Evalue=1e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000883
- InterPro:   IPR014241 [H]

Pfam domain/function: PF00115 COX1 [H]

EC number: =1.9.3.1 [H]

Molecular weight: Translated: 62640; Mature: 62508

Theoretical pI: Translated: 7.00; Mature: 7.00

Prosite motif: PS50855 COX1 ; PS00077 COX1_CUB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQLQDNPTLAAAPKASLDPPAEPWWRFFTFSTDHKVIGIQYLVTTFFFYLVGGALATAV
CCCCCCCCCEEECCCCCCCCCCCCHHEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHH
RAELATPEADFLGFERYNGAFTLHATIMIFLWIVPALMGGFGNYLVPLMIGARDMAFPKL
HHHHCCCCHHHCCHHHCCCEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCC
NAVAFWLVPPSGLLLLASLFIEAPSAGWTSYPPLSLISGKVGEELWILSILLAGTSSILG
CEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHH
AVNFITTILKMRLPGMKMEGMPLFCWAMLAASIITLIATPVLAGALILLSFDLLAGTAFF
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
NPSGGGDPVVYQHMFWFYSHPAVYIMVLPVFGMISEILPVHARKPIFAYKAIAYSSLAIC
CCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
FLGLIVWVHHMFTSGTPDWMRVFFMIATMAIAVPTGIKVFSWLATLWGGKIHFRSAMLFG
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHH
MGFISMFVIGGLSGIILASVPLDIHVHDTYFVVAHLHYVLFGGSVFGIYAGLYHWFPKMT
HHHHHHHHHHCCHHHHHEECCEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
GRLLNEFWGRVHFVLTFVGFNMCFLPMHKLGLMGMPRRVAQYDPQFADLNWISSVGAFVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCHHHHHHHHHHHH
AISTLPFLVNAIYSWVAGPKAGDNPWQALTLEWATSSPPPAHNFYGDPILLTGPYDYGLH
HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCC
SKETLDYFAAQLQSLRELALAEAEPTTSS
CHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TQLQDNPTLAAAPKASLDPPAEPWWRFFTFSTDHKVIGIQYLVTTFFFYLVGGALATAV
CCCCCCCCEEECCCCCCCCCCCCHHEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHH
RAELATPEADFLGFERYNGAFTLHATIMIFLWIVPALMGGFGNYLVPLMIGARDMAFPKL
HHHHCCCCHHHCCHHHCCCEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCC
NAVAFWLVPPSGLLLLASLFIEAPSAGWTSYPPLSLISGKVGEELWILSILLAGTSSILG
CEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHH
AVNFITTILKMRLPGMKMEGMPLFCWAMLAASIITLIATPVLAGALILLSFDLLAGTAFF
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
NPSGGGDPVVYQHMFWFYSHPAVYIMVLPVFGMISEILPVHARKPIFAYKAIAYSSLAIC
CCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
FLGLIVWVHHMFTSGTPDWMRVFFMIATMAIAVPTGIKVFSWLATLWGGKIHFRSAMLFG
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHH
MGFISMFVIGGLSGIILASVPLDIHVHDTYFVVAHLHYVLFGGSVFGIYAGLYHWFPKMT
HHHHHHHHHHCCHHHHHEECCEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
GRLLNEFWGRVHFVLTFVGFNMCFLPMHKLGLMGMPRRVAQYDPQFADLNWISSVGAFVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCHHHHHHHHHHHH
AISTLPFLVNAIYSWVAGPKAGDNPWQALTLEWATSSPPPAHNFYGDPILLTGPYDYGLH
HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCC
SKETLDYFAAQLQSLRELALAEAEPTTSS
CHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8387368; 8905231 [H]