| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is rpoA
Identifier: 86606119
GI number: 86606119
Start: 1456191
End: 1457186
Strand: Reverse
Name: rpoA
Synonym: CYA_1451
Alternate gene names: 86606119
Gene position: 1457186-1456191 (Counterclockwise)
Preceding gene: 86606120
Following gene: 86606118
Centisome position: 49.69
GC content: 59.14
Gene sequence:
>996_bases ATGATGCAGACCAGCCGAACCCTCCACAATCTGGGCAGCAAAGCCGCTTCTAGTGCTGCTCCCTACCAGACCGAGTGCGT CGAATCCCATCAGGAAGCCAATGGCGTTCACTACGGCAAATTTGCCCTGGGGCCACTGGAGCGGGGTCAAGGGATCACGG TGGGCAACGCCCTGCGGCGGGTGTTGCTCTCCAACCTAGAAGGGACGGCAGTAACCGCTGTACGCATTGCCGGGGTGACC CACGAGTTTTCCACGGTGCCGGGGGTGCGGGAAGACGTGATGGAGATCCTACTCAACATGAAGGAGCTGGTGCTGCGCTC CAACGCTCCCGACACGCAGGTGGGCCGTTTGGTGGCACAAGGGCCGGGAGAGGTGACCGCCGAGAAGCTGCAATTGCCCA GCGAGGTGGAAGTGATCAACCCCCGCCATCACATTGCCACCTTGGCGGAAGGGGCGATCCTGGAAATGGAGTTCATGATT GGCCGCGGACGTGGCTACCGTGCCGTCGATTACTCCGACAGCAAATCGATGGCCATCGACTTTCTCCAGATCGACTCCGT CTTCATGCCGGTGCGCAAAGTCAACTACACCGTTGAGGCGGCGCGGGTGGGACAATCTCTGGAAAAAGATCGCCTAATTT TGGAGATTTGGACCAACGGCAGCCTCACCCCCCAGGAGGCCCTCAGCCAGGCGGCTCGCATTTTGGTGGGCCTGTTCTCG CCGCTGCAGGAGGTCAGCTTCGACACCCCGCCAGAGCCCCGGCAAGCTGAGGATAACCAGAAGAACCAGATCCCCATCGA AGAGCTGCAGCTCTCGGTACGGGCTTACAACTGCCTGAAGCGCGCTCAAATCAATACGGTGGCGGATCTATTGGTTTATA CCGAAGAGGATTTGCTGGAGATCAAAAACTTCGGCCAAAAATCCGCGGAAGAGGTGGTGCAAGCTTTGAAGAACCGCCTA GGCCTAACCTTGCCCCGCGAAAGGAGCAAGACGTAG
Upstream 100 bases:
>100_bases GCGCTGGCGACAGGCTTGCCCTCCTGCAGGATGTGAGGCATGGCCTCCAGTCTTCTAAGTTCTCCAAACAGATGTTGAGC CAGACGGACGGGGCTACTCT
Downstream 100 bases:
>100_bases AGCCTTGCCGGCTCGCTGCGGCAAAACCGGTCAACATCTCCACAGGACACAAGATAAAAGGCAGAGGCTACTATGCGTCA CCGCCGTCGTACCCCTCACC
Product: DNA-directed RNA polymerase subunit alpha
Products: NA
Alternate protein names: RNAP subunit alpha; RNA polymerase subunit alpha; Transcriptase subunit alpha [H]
Number of amino acids: Translated: 331; Mature: 331
Protein sequence:
>331_residues MMQTSRTLHNLGSKAASSAAPYQTECVESHQEANGVHYGKFALGPLERGQGITVGNALRRVLLSNLEGTAVTAVRIAGVT HEFSTVPGVREDVMEILLNMKELVLRSNAPDTQVGRLVAQGPGEVTAEKLQLPSEVEVINPRHHIATLAEGAILEMEFMI GRGRGYRAVDYSDSKSMAIDFLQIDSVFMPVRKVNYTVEAARVGQSLEKDRLILEIWTNGSLTPQEALSQAARILVGLFS PLQEVSFDTPPEPRQAEDNQKNQIPIEELQLSVRAYNCLKRAQINTVADLLVYTEEDLLEIKNFGQKSAEEVVQALKNRL GLTLPRERSKT
Sequences:
>Translated_331_residues MMQTSRTLHNLGSKAASSAAPYQTECVESHQEANGVHYGKFALGPLERGQGITVGNALRRVLLSNLEGTAVTAVRIAGVT HEFSTVPGVREDVMEILLNMKELVLRSNAPDTQVGRLVAQGPGEVTAEKLQLPSEVEVINPRHHIATLAEGAILEMEFMI GRGRGYRAVDYSDSKSMAIDFLQIDSVFMPVRKVNYTVEAARVGQSLEKDRLILEIWTNGSLTPQEALSQAARILVGLFS PLQEVSFDTPPEPRQAEDNQKNQIPIEELQLSVRAYNCLKRAQINTVADLLVYTEEDLLEIKNFGQKSAEEVVQALKNRL GLTLPRERSKT >Mature_331_residues MMQTSRTLHNLGSKAASSAAPYQTECVESHQEANGVHYGKFALGPLERGQGITVGNALRRVLLSNLEGTAVTAVRIAGVT HEFSTVPGVREDVMEILLNMKELVLRSNAPDTQVGRLVAQGPGEVTAEKLQLPSEVEVINPRHHIATLAEGAILEMEFMI GRGRGYRAVDYSDSKSMAIDFLQIDSVFMPVRKVNYTVEAARVGQSLEKDRLILEIWTNGSLTPQEALSQAARILVGLFS PLQEVSFDTPPEPRQAEDNQKNQIPIEELQLSVRAYNCLKRAQINTVADLLVYTEEDLLEIKNFGQKSAEEVVQALKNRL GLTLPRERSKT
Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates [H]
COG id: COG0202
COG function: function code K; DNA-directed RNA polymerase, alpha subunit/40 kD subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the RNA polymerase alpha chain family [H]
Homologues:
Organism=Escherichia coli, GI1789690, Length=294, Percent_Identity=40.8163265306122, Blast_Score=202, Evalue=3e-53,
Paralogues:
None
Copy number: 850 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 560 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 6847 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 7,000 Molecules/Cell In: Glucose minimal media
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011261 - InterPro: IPR011262 - InterPro: IPR009025 - InterPro: IPR011263 - InterPro: IPR003583 - InterPro: IPR011260 - InterPro: IPR011773 - ProDom: PD001179 [H]
Pfam domain/function: PF01000 RNA_pol_A_bac; PF03118 RNA_pol_A_CTD; PF01193 RNA_pol_L [H]
EC number: =2.7.7.6 [H]
Molecular weight: Translated: 36515; Mature: 36515
Theoretical pI: Translated: 5.48; Mature: 5.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMQTSRTLHNLGSKAASSAAPYQTECVESHQEANGVHYGKFALGPLERGQGITVGNALRR CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEECCEECCCCCCCCCCCHHHHHHH VLLSNLEGTAVTAVRIAGVTHEFSTVPGVREDVMEILLNMKELVLRSNAPDTQVGRLVAQ HHHHCCCCCEEEEEEEECCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC GPGEVTAEKLQLPSEVEVINPRHHIATLAEGAILEMEFMIGRGRGYRAVDYSDSKSMAID CCCCHHHHHHCCCCCCEEECCHHHHHHHHCCCEEEEEEEEECCCCCEEECCCCCCCCEEH FLQIDSVFMPVRKVNYTVEAARVGQSLEKDRLILEIWTNGSLTPQEALSQAARILVGLFS HHHHHHHHHHHHHHCHHHHHHHHCCHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH PLQEVSFDTPPEPRQAEDNQKNQIPIEELQLSVRAYNCLKRAQINTVADLLVYTEEDLLE HHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH IKNFGQKSAEEVVQALKNRLGLTLPRERSKT HHHCCCHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MMQTSRTLHNLGSKAASSAAPYQTECVESHQEANGVHYGKFALGPLERGQGITVGNALRR CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEECCEECCCCCCCCCCCHHHHHHH VLLSNLEGTAVTAVRIAGVTHEFSTVPGVREDVMEILLNMKELVLRSNAPDTQVGRLVAQ HHHHCCCCCEEEEEEEECCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC GPGEVTAEKLQLPSEVEVINPRHHIATLAEGAILEMEFMIGRGRGYRAVDYSDSKSMAID CCCCHHHHHHCCCCCCEEECCHHHHHHHHCCCEEEEEEEEECCCCCEEECCCCCCCCEEH FLQIDSVFMPVRKVNYTVEAARVGQSLEKDRLILEIWTNGSLTPQEALSQAARILVGLFS HHHHHHHHHHHHHHCHHHHHHHHCCHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH PLQEVSFDTPPEPRQAEDNQKNQIPIEELQLSVRAYNCLKRAQINTVADLLVYTEEDLLE HHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH IKNFGQKSAEEVVQALKNRLGLTLPRERSKT HHHCCCHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA