Definition Synechococcus sp. JA-3-3Ab, complete genome.
Accession NC_007775
Length 2,932,766

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The map label for this gene is 86605938

Identifier: 86605938

GI number: 86605938

Start: 1268403

End: 1269422

Strand: Reverse

Name: 86605938

Synonym: CYA_1255

Alternate gene names: NA

Gene position: 1269422-1268403 (Counterclockwise)

Preceding gene: 86605939

Following gene: 86605937

Centisome position: 43.28

GC content: 58.82

Gene sequence:

>1020_bases
ATGCTGAGGCCCAGTCTTTTGTTGTCCGGATCGGCGCTTTTGGGTTTGCTGTCTTGGCTGTGTTTGAGCGGCGAATGCGG
CTGGTTGGCTTCCCTGCGCAAGGGACGGGGCGCTGTCCCTGAAGTTGCCTCGGCGCCAGCGCAGAGTGTTCAAGTGACGG
CATTTGCCGATGAACCCGATCCTGAGCTCCTGCTCAGGCAACAAGCCCAACTGCAAGCCCAAGTACGGCAGCTTGAGCAG
CGCTCTCAGGCGCATCAGTTGCTGGCGCAGCGGGGGATCCCTCTTTCCACCCAGGCTGGCGAGCGTTTTCACTTGAATCG
CGTCTATCTGGCGCGGCTAGCTCAGTTTCTGGAACAAGAGCCGGGGAACGCGCAGCTCTATCTGCAGCGGGCTCAATACT
TCTGGGATCGGTTGCAGAGCGATCCCCTGGCCTTGCCCGAGCCGGAGCAGGCGGCTGTCGTTGATCACCTGATGCGCAGA
GCGCTACAGGATCTGGACATTGCCATTGCTTTGGATCCCTATTTGCCTGAAGCTTACTTGCTCAAGGCCAGAATACAACA
CGAGTATTTTGGGGAGCTGCAGCAGGCTTTGGCAACTTTGTCCCCTCTGGATCGCATTGCCTATCGCAACCCCCAACTCC
ACTTGTTGCGCTCTCGCATCTGGGCCGAACAGGGACATCTGGAATCGGCGTTTGATGTGTCGCACCTGGCCATCGAGCTG
GCCAAGCAAAACCAAAGCTCTGCCGATCTTTTCGATGCTTATGTCCATCGCGGCCTGATGTGGGCCAGCATTTGCGACTT
CAACTTGGCCGTTCAGGATTTCAGCCGAGCTATCGAGGTGCAGCCGCAGCAAGCCGAGGGCTACTACCACCGCGGCATGG
CACGCGCCTATCAGGGAGAGGATAGGGCCGGTGCCGCTGCCGATCTGGGCCGTGCTTTGACGCTGTGGCAGGCTGCAGGC
AGAGGATCCCCAGAGCTGCTGGAATATGTAGAAGCAGTACGGATGGAACTGTTGCGGTAA

Upstream 100 bases:

>100_bases
GTGGCGCAGGACGGGCATTGCCGAAAGTCTGGACACTGCGGCTGTGGCGAACTAGCTTAGAGGCAACTCTTTTTTCAAGC
TATTTCGTGGGGTGGGATCC

Downstream 100 bases:

>100_bases
CTCCACTGCTAGCTGGTTTTCTGCTGCGGATCTTTGTCTGGGCTATTGAGTAGAGAGGTTGCGGGTTTGGCGTCTTTGGG
CAAGGGGCGTTTGGCAAGTT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MLRPSLLLSGSALLGLLSWLCLSGECGWLASLRKGRGAVPEVASAPAQSVQVTAFADEPDPELLLRQQAQLQAQVRQLEQ
RSQAHQLLAQRGIPLSTQAGERFHLNRVYLARLAQFLEQEPGNAQLYLQRAQYFWDRLQSDPLALPEPEQAAVVDHLMRR
ALQDLDIAIALDPYLPEAYLLKARIQHEYFGELQQALATLSPLDRIAYRNPQLHLLRSRIWAEQGHLESAFDVSHLAIEL
AKQNQSSADLFDAYVHRGLMWASICDFNLAVQDFSRAIEVQPQQAEGYYHRGMARAYQGEDRAGAAADLGRALTLWQAAG
RGSPELLEYVEAVRMELLR

Sequences:

>Translated_339_residues
MLRPSLLLSGSALLGLLSWLCLSGECGWLASLRKGRGAVPEVASAPAQSVQVTAFADEPDPELLLRQQAQLQAQVRQLEQ
RSQAHQLLAQRGIPLSTQAGERFHLNRVYLARLAQFLEQEPGNAQLYLQRAQYFWDRLQSDPLALPEPEQAAVVDHLMRR
ALQDLDIAIALDPYLPEAYLLKARIQHEYFGELQQALATLSPLDRIAYRNPQLHLLRSRIWAEQGHLESAFDVSHLAIEL
AKQNQSSADLFDAYVHRGLMWASICDFNLAVQDFSRAIEVQPQQAEGYYHRGMARAYQGEDRAGAAADLGRALTLWQAAG
RGSPELLEYVEAVRMELLR
>Mature_339_residues
MLRPSLLLSGSALLGLLSWLCLSGECGWLASLRKGRGAVPEVASAPAQSVQVTAFADEPDPELLLRQQAQLQAQVRQLEQ
RSQAHQLLAQRGIPLSTQAGERFHLNRVYLARLAQFLEQEPGNAQLYLQRAQYFWDRLQSDPLALPEPEQAAVVDHLMRR
ALQDLDIAIALDPYLPEAYLLKARIQHEYFGELQQALATLSPLDRIAYRNPQLHLLRSRIWAEQGHLESAFDVSHLAIEL
AKQNQSSADLFDAYVHRGLMWASICDFNLAVQDFSRAIEVQPQQAEGYYHRGMARAYQGEDRAGAAADLGRALTLWQAAG
RGSPELLEYVEAVRMELLR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38053; Mature: 38053

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRPSLLLSGSALLGLLSWLCLSGECGWLASLRKGRGAVPEVASAPAQSVQVTAFADEPD
CCCCCHHHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHCCCCCCEEEEEECCCCC
PELLLRQQAQLQAQVRQLEQRSQAHQLLAQRGIPLSTQAGERFHLNRVYLARLAQFLEQE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
PGNAQLYLQRAQYFWDRLQSDPLALPEPEQAAVVDHLMRRALQDLDIAIALDPYLPEAYL
CCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHH
LKARIQHEYFGELQQALATLSPLDRIAYRNPQLHLLRSRIWAEQGHLESAFDVSHLAIEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
AKQNQSSADLFDAYVHRGLMWASICDFNLAVQDFSRAIEVQPQQAEGYYHRGMARAYQGE
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHCCC
DRAGAAADLGRALTLWQAAGRGSPELLEYVEAVRMELLR
CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLRPSLLLSGSALLGLLSWLCLSGECGWLASLRKGRGAVPEVASAPAQSVQVTAFADEPD
CCCCCHHHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHCCCCCCEEEEEECCCCC
PELLLRQQAQLQAQVRQLEQRSQAHQLLAQRGIPLSTQAGERFHLNRVYLARLAQFLEQE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
PGNAQLYLQRAQYFWDRLQSDPLALPEPEQAAVVDHLMRRALQDLDIAIALDPYLPEAYL
CCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHH
LKARIQHEYFGELQQALATLSPLDRIAYRNPQLHLLRSRIWAEQGHLESAFDVSHLAIEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
AKQNQSSADLFDAYVHRGLMWASICDFNLAVQDFSRAIEVQPQQAEGYYHRGMARAYQGE
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHCCC
DRAGAAADLGRALTLWQAAGRGSPELLEYVEAVRMELLR
CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA