| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86605938
Identifier: 86605938
GI number: 86605938
Start: 1268403
End: 1269422
Strand: Reverse
Name: 86605938
Synonym: CYA_1255
Alternate gene names: NA
Gene position: 1269422-1268403 (Counterclockwise)
Preceding gene: 86605939
Following gene: 86605937
Centisome position: 43.28
GC content: 58.82
Gene sequence:
>1020_bases ATGCTGAGGCCCAGTCTTTTGTTGTCCGGATCGGCGCTTTTGGGTTTGCTGTCTTGGCTGTGTTTGAGCGGCGAATGCGG CTGGTTGGCTTCCCTGCGCAAGGGACGGGGCGCTGTCCCTGAAGTTGCCTCGGCGCCAGCGCAGAGTGTTCAAGTGACGG CATTTGCCGATGAACCCGATCCTGAGCTCCTGCTCAGGCAACAAGCCCAACTGCAAGCCCAAGTACGGCAGCTTGAGCAG CGCTCTCAGGCGCATCAGTTGCTGGCGCAGCGGGGGATCCCTCTTTCCACCCAGGCTGGCGAGCGTTTTCACTTGAATCG CGTCTATCTGGCGCGGCTAGCTCAGTTTCTGGAACAAGAGCCGGGGAACGCGCAGCTCTATCTGCAGCGGGCTCAATACT TCTGGGATCGGTTGCAGAGCGATCCCCTGGCCTTGCCCGAGCCGGAGCAGGCGGCTGTCGTTGATCACCTGATGCGCAGA GCGCTACAGGATCTGGACATTGCCATTGCTTTGGATCCCTATTTGCCTGAAGCTTACTTGCTCAAGGCCAGAATACAACA CGAGTATTTTGGGGAGCTGCAGCAGGCTTTGGCAACTTTGTCCCCTCTGGATCGCATTGCCTATCGCAACCCCCAACTCC ACTTGTTGCGCTCTCGCATCTGGGCCGAACAGGGACATCTGGAATCGGCGTTTGATGTGTCGCACCTGGCCATCGAGCTG GCCAAGCAAAACCAAAGCTCTGCCGATCTTTTCGATGCTTATGTCCATCGCGGCCTGATGTGGGCCAGCATTTGCGACTT CAACTTGGCCGTTCAGGATTTCAGCCGAGCTATCGAGGTGCAGCCGCAGCAAGCCGAGGGCTACTACCACCGCGGCATGG CACGCGCCTATCAGGGAGAGGATAGGGCCGGTGCCGCTGCCGATCTGGGCCGTGCTTTGACGCTGTGGCAGGCTGCAGGC AGAGGATCCCCAGAGCTGCTGGAATATGTAGAAGCAGTACGGATGGAACTGTTGCGGTAA
Upstream 100 bases:
>100_bases GTGGCGCAGGACGGGCATTGCCGAAAGTCTGGACACTGCGGCTGTGGCGAACTAGCTTAGAGGCAACTCTTTTTTCAAGC TATTTCGTGGGGTGGGATCC
Downstream 100 bases:
>100_bases CTCCACTGCTAGCTGGTTTTCTGCTGCGGATCTTTGTCTGGGCTATTGAGTAGAGAGGTTGCGGGTTTGGCGTCTTTGGG CAAGGGGCGTTTGGCAAGTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 339; Mature: 339
Protein sequence:
>339_residues MLRPSLLLSGSALLGLLSWLCLSGECGWLASLRKGRGAVPEVASAPAQSVQVTAFADEPDPELLLRQQAQLQAQVRQLEQ RSQAHQLLAQRGIPLSTQAGERFHLNRVYLARLAQFLEQEPGNAQLYLQRAQYFWDRLQSDPLALPEPEQAAVVDHLMRR ALQDLDIAIALDPYLPEAYLLKARIQHEYFGELQQALATLSPLDRIAYRNPQLHLLRSRIWAEQGHLESAFDVSHLAIEL AKQNQSSADLFDAYVHRGLMWASICDFNLAVQDFSRAIEVQPQQAEGYYHRGMARAYQGEDRAGAAADLGRALTLWQAAG RGSPELLEYVEAVRMELLR
Sequences:
>Translated_339_residues MLRPSLLLSGSALLGLLSWLCLSGECGWLASLRKGRGAVPEVASAPAQSVQVTAFADEPDPELLLRQQAQLQAQVRQLEQ RSQAHQLLAQRGIPLSTQAGERFHLNRVYLARLAQFLEQEPGNAQLYLQRAQYFWDRLQSDPLALPEPEQAAVVDHLMRR ALQDLDIAIALDPYLPEAYLLKARIQHEYFGELQQALATLSPLDRIAYRNPQLHLLRSRIWAEQGHLESAFDVSHLAIEL AKQNQSSADLFDAYVHRGLMWASICDFNLAVQDFSRAIEVQPQQAEGYYHRGMARAYQGEDRAGAAADLGRALTLWQAAG RGSPELLEYVEAVRMELLR >Mature_339_residues MLRPSLLLSGSALLGLLSWLCLSGECGWLASLRKGRGAVPEVASAPAQSVQVTAFADEPDPELLLRQQAQLQAQVRQLEQ RSQAHQLLAQRGIPLSTQAGERFHLNRVYLARLAQFLEQEPGNAQLYLQRAQYFWDRLQSDPLALPEPEQAAVVDHLMRR ALQDLDIAIALDPYLPEAYLLKARIQHEYFGELQQALATLSPLDRIAYRNPQLHLLRSRIWAEQGHLESAFDVSHLAIEL AKQNQSSADLFDAYVHRGLMWASICDFNLAVQDFSRAIEVQPQQAEGYYHRGMARAYQGEDRAGAAADLGRALTLWQAAG RGSPELLEYVEAVRMELLR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38053; Mature: 38053
Theoretical pI: Translated: 5.83; Mature: 5.83
Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRPSLLLSGSALLGLLSWLCLSGECGWLASLRKGRGAVPEVASAPAQSVQVTAFADEPD CCCCCHHHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHCCCCCCEEEEEECCCCC PELLLRQQAQLQAQVRQLEQRSQAHQLLAQRGIPLSTQAGERFHLNRVYLARLAQFLEQE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC PGNAQLYLQRAQYFWDRLQSDPLALPEPEQAAVVDHLMRRALQDLDIAIALDPYLPEAYL CCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHH LKARIQHEYFGELQQALATLSPLDRIAYRNPQLHLLRSRIWAEQGHLESAFDVSHLAIEL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH AKQNQSSADLFDAYVHRGLMWASICDFNLAVQDFSRAIEVQPQQAEGYYHRGMARAYQGE HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHCCC DRAGAAADLGRALTLWQAAGRGSPELLEYVEAVRMELLR CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure MLRPSLLLSGSALLGLLSWLCLSGECGWLASLRKGRGAVPEVASAPAQSVQVTAFADEPD CCCCCHHHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHCCCCCCEEEEEECCCCC PELLLRQQAQLQAQVRQLEQRSQAHQLLAQRGIPLSTQAGERFHLNRVYLARLAQFLEQE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC PGNAQLYLQRAQYFWDRLQSDPLALPEPEQAAVVDHLMRRALQDLDIAIALDPYLPEAYL CCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHH LKARIQHEYFGELQQALATLSPLDRIAYRNPQLHLLRSRIWAEQGHLESAFDVSHLAIEL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH AKQNQSSADLFDAYVHRGLMWASICDFNLAVQDFSRAIEVQPQQAEGYYHRGMARAYQGE HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHCCC DRAGAAADLGRALTLWQAAGRGSPELLEYVEAVRMELLR CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA