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The map label for this gene is ydcM [C]

Identifier: 86605824

GI number: 86605824

Start: 1160019

End: 1161290

Strand: Reverse

Name: ydcM [C]

Synonym: CYA_1136

Alternate gene names: 86605824

Gene position: 1161290-1160019 (Counterclockwise)

Preceding gene: 86605832

Following gene: 86605823

Centisome position: 39.6

GC content: 58.25

Gene sequence:

>1272_bases
ATGATTATCACCTACGAGTACCGGATCCTGCCCAGCGACGACCAAGCCGCTCTGATGACCGAGTGGCTGGAATTGTTGCG
GCGGCAGTGGAACGACGCTCTGGGGCAGAGACTGGACTGGCTGACCGCAACCCGTTGCCCAATTGACCGCTGCAGTCTTG
TCTCGTGCCCGTTGCCTGTGTCAGAAGCTCCGCTGGAGCCGAATTATTATCGGCAGGCGGGATCCCTCAAACAAATCAAG
CAACTATTCCCGGCCTACCGGGGCATTTACGCCGAGGTGCTGCAGCAAAACTTGATGCGGCTGGACAAGGCGTGGAAAGC
GTGGCAGGTGCCGGATAGCACAGGCAAGCGGCGGGGGCGGCCCCGCTTCAAAAAAGCGGGGGAGTTGAGATCCTTCACAT
TCCCCCGCATCAATTGCCCCAAGGCGGGAGCGCATCTGGAAGGGGAGACTCTGCGGCTGAGCAAGATTGGCTCGATGCCT
GTGGTGCTGCACCGCCCCTTACCAGAGGGGTTCGTGCCCAAAACCTGCACAGTGGTGCGCAAGGCCGATGGGTGGTATGT
CTGCATTACTTTGGAGGACAAAAGCGTTCCTCTCCCAGAGCCTGTGCCGGTCAAAAGGGCGGTGGGTATTGATGTGGGAT
TGGATAGGTTTCTCACCACCAGCGATGGGGAGGTGGTGCCTATCCCGCGGTACTACCGCCAAGCTCAAAAGCACTTGGCT
CGACAGCAGCGGCAACTGAGCCGCAAAGTGAAGGGGTCCGCCAACTGGAAGAGACAAGCCACGAAAGTTGCTTGTTTGCA
GTTGCACGTTGCCCGACAACGCAAAGCGTTCCACTACCAAGTGGCGCACTGGCTGGTGGGGCAATACGACCTGTTGGTGG
TGGAGGATCTCAACGTCCGAGGGCTGGCACGGACTCGGTTGGCTAAATCGATTTTGGATGCGGCTTGGGGACAATTTCTT
GACATTCTGACAGCAGTGGCGGTCAAACGCGGCAAACAGGTGTTGAGAGTGGATCCCCCTGGTACGTCCCAAAATTGTTG
TGTTTGTGAGGAGCGTGTTCCCAAGACCTTGTCGGAACGGGTGCATGATTGCCCCCGTTGCGGGTCGTGGGACAGAGACT
TGAACGCTGCTATCGAGATTTTGAAGCGAGGACTCAGGGCGGTGGGACTGCCGCTCTCTGGCTGTGGAGGATCCTGGTTT
ACCAGTCCGTTGAAGCAGCAACTCCGGGAAGTGATTCTCGGAAGCTCCCGTCTACAGCCCGTCAGGGCTTAG

Upstream 100 bases:

>100_bases
GACGACGGTACTTTGTCACCAGCACCAAGTGGATTTGTAGGCTGTAAACAGAACGATGGCCTATGTTGTAGCTCGTTGCG
CTAAATGCTAGAACCGTCTC

Downstream 100 bases:

>100_bases
CGGGAGAGGATGTCACTCTCAGCTTGCACCCAAAAGCGGGGCGGTGACCGGCATCACCTGGGCGCCTGTTCCCAGAAGAT
GTCCTATACTCTACCGATTC

Product: ISSoc3, orfB transposase

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 423; Mature: 423

Protein sequence:

>423_residues
MIITYEYRILPSDDQAALMTEWLELLRRQWNDALGQRLDWLTATRCPIDRCSLVSCPLPVSEAPLEPNYYRQAGSLKQIK
QLFPAYRGIYAEVLQQNLMRLDKAWKAWQVPDSTGKRRGRPRFKKAGELRSFTFPRINCPKAGAHLEGETLRLSKIGSMP
VVLHRPLPEGFVPKTCTVVRKADGWYVCITLEDKSVPLPEPVPVKRAVGIDVGLDRFLTTSDGEVVPIPRYYRQAQKHLA
RQQRQLSRKVKGSANWKRQATKVACLQLHVARQRKAFHYQVAHWLVGQYDLLVVEDLNVRGLARTRLAKSILDAAWGQFL
DILTAVAVKRGKQVLRVDPPGTSQNCCVCEERVPKTLSERVHDCPRCGSWDRDLNAAIEILKRGLRAVGLPLSGCGGSWF
TSPLKQQLREVILGSSRLQPVRA

Sequences:

>Translated_423_residues
MIITYEYRILPSDDQAALMTEWLELLRRQWNDALGQRLDWLTATRCPIDRCSLVSCPLPVSEAPLEPNYYRQAGSLKQIK
QLFPAYRGIYAEVLQQNLMRLDKAWKAWQVPDSTGKRRGRPRFKKAGELRSFTFPRINCPKAGAHLEGETLRLSKIGSMP
VVLHRPLPEGFVPKTCTVVRKADGWYVCITLEDKSVPLPEPVPVKRAVGIDVGLDRFLTTSDGEVVPIPRYYRQAQKHLA
RQQRQLSRKVKGSANWKRQATKVACLQLHVARQRKAFHYQVAHWLVGQYDLLVVEDLNVRGLARTRLAKSILDAAWGQFL
DILTAVAVKRGKQVLRVDPPGTSQNCCVCEERVPKTLSERVHDCPRCGSWDRDLNAAIEILKRGLRAVGLPLSGCGGSWF
TSPLKQQLREVILGSSRLQPVRA
>Mature_423_residues
MIITYEYRILPSDDQAALMTEWLELLRRQWNDALGQRLDWLTATRCPIDRCSLVSCPLPVSEAPLEPNYYRQAGSLKQIK
QLFPAYRGIYAEVLQQNLMRLDKAWKAWQVPDSTGKRRGRPRFKKAGELRSFTFPRINCPKAGAHLEGETLRLSKIGSMP
VVLHRPLPEGFVPKTCTVVRKADGWYVCITLEDKSVPLPEPVPVKRAVGIDVGLDRFLTTSDGEVVPIPRYYRQAQKHLA
RQQRQLSRKVKGSANWKRQATKVACLQLHVARQRKAFHYQVAHWLVGQYDLLVVEDLNVRGLARTRLAKSILDAAWGQFL
DILTAVAVKRGKQVLRVDPPGTSQNCCVCEERVPKTLSERVHDCPRCGSWDRDLNAAIEILKRGLRAVGLPLSGCGGSWF
TSPLKQQLREVILGSSRLQPVRA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=345, Percent_Identity=33.0434782608696, Blast_Score=136, Evalue=3e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 47926; Mature: 47926

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIITYEYRILPSDDQAALMTEWLELLRRQWNDALGQRLDWLTATRCPIDRCSLVSCPLPV
CEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCC
SEAPLEPNYYRQAGSLKQIKQLFPAYRGIYAEVLQQNLMRLDKAWKAWQVPDSTGKRRGR
CCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PRFKKAGELRSFTFPRINCPKAGAHLEGETLRLSKIGSMPVVLHRPLPEGFVPKTCTVVR
CCHHHCCCHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCCCCCEEEEE
KADGWYVCITLEDKSVPLPEPVPVKRAVGIDVGLDRFLTTSDGEVVPIPRYYRQAQKHLA
ECCCEEEEEEEECCCCCCCCCCCCHHHCCCCCCHHHHEECCCCCEEECHHHHHHHHHHHH
RQQRQLSRKVKGSANWKRQATKVACLQLHVARQRKAFHYQVAHWLVGQYDLLVVEDLNVR
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
GLARTRLAKSILDAAWGQFLDILTAVAVKRGKQVLRVDPPGTSQNCCVCEERVPKTLSER
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEECHHHHHHHHHHH
VHDCPRCGSWDRDLNAAIEILKRGLRAVGLPLSGCGGSWFTSPLKQQLREVILGSSRLQP
HHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
VRA
CCC
>Mature Secondary Structure
MIITYEYRILPSDDQAALMTEWLELLRRQWNDALGQRLDWLTATRCPIDRCSLVSCPLPV
CEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCC
SEAPLEPNYYRQAGSLKQIKQLFPAYRGIYAEVLQQNLMRLDKAWKAWQVPDSTGKRRGR
CCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PRFKKAGELRSFTFPRINCPKAGAHLEGETLRLSKIGSMPVVLHRPLPEGFVPKTCTVVR
CCHHHCCCHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCCCCCEEEEE
KADGWYVCITLEDKSVPLPEPVPVKRAVGIDVGLDRFLTTSDGEVVPIPRYYRQAQKHLA
ECCCEEEEEEEECCCCCCCCCCCCHHHCCCCCCHHHHEECCCCCEEECHHHHHHHHHHHH
RQQRQLSRKVKGSANWKRQATKVACLQLHVARQRKAFHYQVAHWLVGQYDLLVVEDLNVR
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
GLARTRLAKSILDAAWGQFLDILTAVAVKRGKQVLRVDPPGTSQNCCVCEERVPKTLSER
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEECHHHHHHHHHHH
VHDCPRCGSWDRDLNAAIEILKRGLRAVGLPLSGCGGSWFTSPLKQQLREVILGSSRLQP
HHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
VRA
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]