| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is recJ-1
Identifier: 86605809
GI number: 86605809
Start: 1146623
End: 1148851
Strand: Reverse
Name: recJ-1
Synonym: CYA_1120
Alternate gene names: 86605809
Gene position: 1148851-1146623 (Counterclockwise)
Preceding gene: 86605810
Following gene: 86605807
Centisome position: 39.17
GC content: 64.56
Gene sequence:
>2229_bases ATGGAATACCGCTGGGATCTGCTGCCCACCCCGCCTCAATTTGATCCGGAGCTGAGCCGAGAGTACGGCAAGTATGCGGC CAAGGTGCTGGCTCTGCGGGGGTTGCACAGCCGAGAACAGGCGCGGGCTTTTGTCGATCCTAATCAGTATTCTCCCACGC CAGCGGGATCCCTGCCGGATCTGGAGCGGGCGGTGGCGCGGCTGTTGCAGGCAAGAAAAAGAGGAGAAACCCTCTGCATT TGGGGAGACTTCGACTGCGATGGCGTTACCGCCACCAGCCTCTTGCTCTCGGCGCTACAAACCTTGGGCTTCCGAGTCCA GTTCACTCTACCGCTGCGCAGCACCGAAGGGCATGGCTTGAACCCTCAGCGGCTGCAGCAGGTGCTGGATCAAGGCTGCC AGGTGCTCCTGACGGTGGATTGCGGCATAGGCAATGCTGCCGAGATTGCTCTGGCCCAAGCCCAAGGGATGGACGTGATC GTGACGGATCACCACGCCCTGCCGGATCCCTTGCCCCCTGCCTATGCGGTGGTCAACCCGCTGCGCCTGCCAGAGGAACA CCCGCTGCGCTTTCTGCCGGGGGTGGGGGTGGCCTACAAGCTGGCGGAGGCCCTCTACCAAGCGCTGGGGATCCCTGGTG TAGAAGAGTACCTGGATCTGGTGGCGGTGGGGATCGTGGCCGATGTGGCGGTGTTGCAGCGGGAGTGCCGCTACCTGGTG CAGCGGGGCCTGCCCGTGCTGGCCAACACCCAGCGTCCGGGGCTGCGGGCTCTTTTGGATTGGGTGAGCAACAGCCAATC CTCAGGAACGCCGACAGCCCAGGACATCGCCTTTCGCCTTGCCCCCAAGCTGAACGCCATTGGTCGCTGGGACGATGCCA GCCTAGCGGTGGAGCTGTTGACCACCTCGGATCCGCAGCGGGCCCAGACGCTGGTGGAGCATTTCGTTGCCCTCAATGAG GAGTGTCGGCAACTCACCCAACAGGTTCTGCAAGAGGCCAGCCAACAGGTGGAGAGCTTGGATCTGGCGCGGGAGCGGGC AATTGTTTTGGCCGGAAGCGGCTGGAATCCGGGGGTTTTGGGGATCGCCGCGGCGCGCTTGGCGGAGCAGTACGGTTGCC CGACGGTGTTGATTGCCAAAGACGAGAGGACGGGACGGGGCTATGGTTCGGGCCGCTCGATTCCGGGGGTGAACCTGGTG GAGGCCATCGAGGCTGTGCGTCCCCTCTTGCTGGGGGGAGGCGGCCACCCCATGGCCGCTGGGATCCAAGTGGATCTGTC CTGCCTGGCCGCCGTACAACTGGCTTTGCGGCGGGAGCTGGCCGCACGGGTCGGCCCGGATCGCCAAGCTCGCGCCTTGG CGGTGGAGATTGTTATCGATTGGGAGCGGTTGGCCTCTCAGGGCCGGGATAGGGTGGCAGAGCTGGACGAGGTGTATCGG CAGTTGCAGCTTCTGCAGCCCTTTGGCCACGGCAACCCCAACCCTGTCGTAGCCTTGATGAACGTTCGCCGCGGCAGCGT CAGGCTGAGGGCTTCCCAGAATGGCCGCCACCTGAAGTTTGAGCTGGGATCCCGTGCCCTCTGGTTTTGGGAAGCCGGCG AAGAGCTGGAGCGGTGGCAAGCATGCCAGGCCTTGGACATCGCCCTGCAGTTGGAAGCCGAGCAGCCCTGGCAGGGCAAA GTGCTGGCGGTGCGCCCCTCTGGCGACTGGCAGGCGCCCACCGTTTCCGCCCCCAGCCTTCGGATCCAGGATTACCGGCA ACGCCCCCTGCCGGATTCCCTCCAAGAAGTCTTCCGCTACGATGGGCAGGCCCTTCCTCTCGAGCAAGACTTCCTCCCGT CGGCAAAAACAGCTCTGCTGCTGGCCCGCTGGCCCTGGCTGCCGGCAAATCTAGCCCAACTGCTGCAGCAGGTGCAGCCG CAAACGCTGATCCTGGCCGCTTCTGGTCATCACTGGAAGCGCCTCCCCCACCAAATCGCCCGACTCCAGGAATTGGGGCG GACGGGACAATGGGATCCCCATGTCCTGGCGGCGACAACCGGCTTGCCCTGGCAGTGGCTGGCGGAATTGGAGGGGCCGG AGCAGATCCCAACACGGCTGCTGGGCCGCATTCAAGAATCCCAAGCTTTTCACCGCTGGCTGGACGAAGCCAGCCCCACC CAGATCGCCCAGCTCTGTCAGCGGCTGCTGCGACCGGATCCCCTGCCGGCAGTTGTTTCTCCGAAGTAG
Upstream 100 bases:
>100_bases ATCGCTCACCCCGGCTTTTGCTTTCCGGGATCCCAAGCTGCTTTTCTCCCTGAGCAGTTTTTGATAGGCTCCCAGGGAGT TTTATTCCTGTCGAGCTTGC
Downstream 100 bases:
>100_bases AAGACGCCCCCCGGCACCACCATCAGCCAACTTTGGGATTGCGCACTACGCTTAGCCCTGCCGGCTGGAGTTGTGCCTCT TCGGCTCTGTCGGGCAGCGG
Product: single-stranded-DNA-specific exonuclease RecJ
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 742; Mature: 742
Protein sequence:
>742_residues MEYRWDLLPTPPQFDPELSREYGKYAAKVLALRGLHSREQARAFVDPNQYSPTPAGSLPDLERAVARLLQARKRGETLCI WGDFDCDGVTATSLLLSALQTLGFRVQFTLPLRSTEGHGLNPQRLQQVLDQGCQVLLTVDCGIGNAAEIALAQAQGMDVI VTDHHALPDPLPPAYAVVNPLRLPEEHPLRFLPGVGVAYKLAEALYQALGIPGVEEYLDLVAVGIVADVAVLQRECRYLV QRGLPVLANTQRPGLRALLDWVSNSQSSGTPTAQDIAFRLAPKLNAIGRWDDASLAVELLTTSDPQRAQTLVEHFVALNE ECRQLTQQVLQEASQQVESLDLARERAIVLAGSGWNPGVLGIAAARLAEQYGCPTVLIAKDERTGRGYGSGRSIPGVNLV EAIEAVRPLLLGGGGHPMAAGIQVDLSCLAAVQLALRRELAARVGPDRQARALAVEIVIDWERLASQGRDRVAELDEVYR QLQLLQPFGHGNPNPVVALMNVRRGSVRLRASQNGRHLKFELGSRALWFWEAGEELERWQACQALDIALQLEAEQPWQGK VLAVRPSGDWQAPTVSAPSLRIQDYRQRPLPDSLQEVFRYDGQALPLEQDFLPSAKTALLLARWPWLPANLAQLLQQVQP QTLILAASGHHWKRLPHQIARLQELGRTGQWDPHVLAATTGLPWQWLAELEGPEQIPTRLLGRIQESQAFHRWLDEASPT QIAQLCQRLLRPDPLPAVVSPK
Sequences:
>Translated_742_residues MEYRWDLLPTPPQFDPELSREYGKYAAKVLALRGLHSREQARAFVDPNQYSPTPAGSLPDLERAVARLLQARKRGETLCI WGDFDCDGVTATSLLLSALQTLGFRVQFTLPLRSTEGHGLNPQRLQQVLDQGCQVLLTVDCGIGNAAEIALAQAQGMDVI VTDHHALPDPLPPAYAVVNPLRLPEEHPLRFLPGVGVAYKLAEALYQALGIPGVEEYLDLVAVGIVADVAVLQRECRYLV QRGLPVLANTQRPGLRALLDWVSNSQSSGTPTAQDIAFRLAPKLNAIGRWDDASLAVELLTTSDPQRAQTLVEHFVALNE ECRQLTQQVLQEASQQVESLDLARERAIVLAGSGWNPGVLGIAAARLAEQYGCPTVLIAKDERTGRGYGSGRSIPGVNLV EAIEAVRPLLLGGGGHPMAAGIQVDLSCLAAVQLALRRELAARVGPDRQARALAVEIVIDWERLASQGRDRVAELDEVYR QLQLLQPFGHGNPNPVVALMNVRRGSVRLRASQNGRHLKFELGSRALWFWEAGEELERWQACQALDIALQLEAEQPWQGK VLAVRPSGDWQAPTVSAPSLRIQDYRQRPLPDSLQEVFRYDGQALPLEQDFLPSAKTALLLARWPWLPANLAQLLQQVQP QTLILAASGHHWKRLPHQIARLQELGRTGQWDPHVLAATTGLPWQWLAELEGPEQIPTRLLGRIQESQAFHRWLDEASPT QIAQLCQRLLRPDPLPAVVSPK >Mature_742_residues MEYRWDLLPTPPQFDPELSREYGKYAAKVLALRGLHSREQARAFVDPNQYSPTPAGSLPDLERAVARLLQARKRGETLCI WGDFDCDGVTATSLLLSALQTLGFRVQFTLPLRSTEGHGLNPQRLQQVLDQGCQVLLTVDCGIGNAAEIALAQAQGMDVI VTDHHALPDPLPPAYAVVNPLRLPEEHPLRFLPGVGVAYKLAEALYQALGIPGVEEYLDLVAVGIVADVAVLQRECRYLV QRGLPVLANTQRPGLRALLDWVSNSQSSGTPTAQDIAFRLAPKLNAIGRWDDASLAVELLTTSDPQRAQTLVEHFVALNE ECRQLTQQVLQEASQQVESLDLARERAIVLAGSGWNPGVLGIAAARLAEQYGCPTVLIAKDERTGRGYGSGRSIPGVNLV EAIEAVRPLLLGGGGHPMAAGIQVDLSCLAAVQLALRRELAARVGPDRQARALAVEIVIDWERLASQGRDRVAELDEVYR QLQLLQPFGHGNPNPVVALMNVRRGSVRLRASQNGRHLKFELGSRALWFWEAGEELERWQACQALDIALQLEAEQPWQGK VLAVRPSGDWQAPTVSAPSLRIQDYRQRPLPDSLQEVFRYDGQALPLEQDFLPSAKTALLLARWPWLPANLAQLLQQVQP QTLILAASGHHWKRLPHQIARLQELGRTGQWDPHVLAATTGLPWQWLAELEGPEQIPTRLLGRIQESQAFHRWLDEASPT QIAQLCQRLLRPDPLPAVVSPK
Specific function: Putative single-stranded-DNA-specific exonuclease. RecA thread formation during DNA double-strand break repair requires RecJ or AadAB [H]
COG id: COG0608
COG function: function code L; Single-stranded DNA-specific exonuclease
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 OB DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1789259, Length=388, Percent_Identity=36.8556701030928, Blast_Score=211, Evalue=2e-55,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003156 - InterPro: IPR001667 - InterPro: IPR004610 - InterPro: IPR018779 [H]
Pfam domain/function: PF01368 DHH; PF02272 DHHA1; PF10141 ssDNA-exonuc_C [H]
EC number: 3.1.-.- [C]
Molecular weight: Translated: 81839; Mature: 81839
Theoretical pI: Translated: 6.29; Mature: 6.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEYRWDLLPTPPQFDPELSREYGKYAAKVLALRGLHSREQARAFVDPNQYSPTPAGSLPD CCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHEECCCCCCCCCCCCCCCH LERAVARLLQARKRGETLCIWGDFDCDGVTATSLLLSALQTLGFRVQFTLPLRSTEGHGL HHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCC NPQRLQQVLDQGCQVLLTVDCGIGNAAEIALAQAQGMDVIVTDHHALPDPLPPAYAVVNP CHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHCC LRLPEEHPLRFLPGVGVAYKLAEALYQALGIPGVEEYLDLVAVGIVADVAVLQRECRYLV CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH QRGLPVLANTQRPGLRALLDWVSNSQSSGTPTAQDIAFRLAPKLNAIGRWDDASLAVELL HCCCCEEECCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHEEEEE TTSDPQRAQTLVEHFVALNEECRQLTQQVLQEASQQVESLDLARERAIVLAGSGWNPGVL ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCHH GIAAARLAEQYGCPTVLIAKDERTGRGYGSGRSIPGVNLVEAIEAVRPLLLGGGGHPMAA HHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEECCCCCCCCC GIQVDLSCLAAVQLALRRELAARVGPDRQARALAVEIVIDWERLASQGRDRVAELDEVYR CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEHHHHHHCCHHHHHHHHHHHH QLQLLQPFGHGNPNPVVALMNVRRGSVRLRASQNGRHLKFELGSRALWFWEAGEELERWQ HHHHHHHCCCCCCCCEEEEEEECCCCEEEEECCCCCEEEEEECCEEEEEECCCHHHHHHH ACQALDIALQLEAEQPWQGKVLAVRPSGDWQAPTVSAPSLRIQDYRQRPLPDSLQEVFRY HHHHHEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHC DGQALPLEQDFLPSAKTALLLARWPWLPANLAQLLQQVQPQTLILAASGHHWKRLPHQIA CCCCCCCCHHCCCCHHHHEEHHCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHH RLQELGRTGQWDPHVLAATTGLPWQWLAELEGPEQIPTRLLGRIQESQAFHRWLDEASPT HHHHHCCCCCCCCCEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHH QIAQLCQRLLRPDPLPAVVSPK HHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MEYRWDLLPTPPQFDPELSREYGKYAAKVLALRGLHSREQARAFVDPNQYSPTPAGSLPD CCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHEECCCCCCCCCCCCCCCH LERAVARLLQARKRGETLCIWGDFDCDGVTATSLLLSALQTLGFRVQFTLPLRSTEGHGL HHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCC NPQRLQQVLDQGCQVLLTVDCGIGNAAEIALAQAQGMDVIVTDHHALPDPLPPAYAVVNP CHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHCC LRLPEEHPLRFLPGVGVAYKLAEALYQALGIPGVEEYLDLVAVGIVADVAVLQRECRYLV CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH QRGLPVLANTQRPGLRALLDWVSNSQSSGTPTAQDIAFRLAPKLNAIGRWDDASLAVELL HCCCCEEECCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHEEEEE TTSDPQRAQTLVEHFVALNEECRQLTQQVLQEASQQVESLDLARERAIVLAGSGWNPGVL ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCHH GIAAARLAEQYGCPTVLIAKDERTGRGYGSGRSIPGVNLVEAIEAVRPLLLGGGGHPMAA HHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEECCCCCCCCC GIQVDLSCLAAVQLALRRELAARVGPDRQARALAVEIVIDWERLASQGRDRVAELDEVYR CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEHHHHHHCCHHHHHHHHHHHH QLQLLQPFGHGNPNPVVALMNVRRGSVRLRASQNGRHLKFELGSRALWFWEAGEELERWQ HHHHHHHCCCCCCCCEEEEEEECCCCEEEEECCCCCEEEEEECCEEEEEECCCHHHHHHH ACQALDIALQLEAEQPWQGKVLAVRPSGDWQAPTVSAPSLRIQDYRQRPLPDSLQEVFRY HHHHHEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHC DGQALPLEQDFLPSAKTALLLARWPWLPANLAQLLQQVQPQTLILAASGHHWKRLPHQIA CCCCCCCCHHCCCCHHHHEEHHCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHH RLQELGRTGQWDPHVLAATTGLPWQWLAELEGPEQIPTRLLGRIQESQAFHRWLDEASPT HHHHHCCCCCCCCCEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHH QIAQLCQRLLRPDPLPAVVSPK HHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]