Click here to switch to the map view.

The map label for this gene is trmE [C]

Identifier: 86605806

GI number: 86605806

Start: 1143681

End: 1145201

Strand: Reverse

Name: trmE [C]

Synonym: CYA_1116

Alternate gene names: 86605806

Gene position: 1145201-1143681 (Counterclockwise)

Preceding gene: 86605807

Following gene: 86605803

Centisome position: 39.05

GC content: 65.48

Gene sequence:

>1521_bases
ATGCGAACAGTTCCCTATCTGCGCTTGCTGCTGCTGTTGGCGCTGTTGGCCTCGTTCGCGGGCCTGATCGTCTGGCTGAT
CCAATCGTTTTTGGATCTGTACTACGCCACCCGCTACCACCCGATTTTGGGGGGGCTGTTGATCGGGGTGCTGGTGTTGC
TGCTGCTGGTGTTTTTGGCCGCTTCCATCTACTACTTGTTTCTGTTCCGCCCCGCCCCTAAAACCGAGAGGCTTCCCAGG
CCAGCTCCCCCGGCAACTCCTGCCGAGAAGTGGGAGGCAGCCCGGCGCAACCTGGCGCAACTAGAAGCTCAGATGGCGCA
GATCCAGGATCAGGTGGCGCGGGCGGCGCTGGCGGAACGGTCGGCCCGGCTGGCCCAACAGTTGGCCCAGCCGCAACTGA
AGGTGGTGGTTTTCGGCACCGGATCGGCGGGCAAAACCTCGCTGGTGAACGCGCTGCTGGGGCGGCGGGTGGGGGCGGTG
GGGGCAACGCTGGGCACCACGCAGGCGGTGGCGGTTTACGATTGGGACCTGCCCGGGATCCCCCACCCGGTGCAGATCGT
GGACTGTCCGGGCATTTTGGAGATCGGGCCGGCAGGGGCGATGCGGGAAGAGGAGGCGCAGGCCCAGGCCCAAGCTGCCG
ATCTGCTGCTGGTGGTGGTGGACGGGGATCTGCGCCGGTCGGAGGTGGATCCCTTGCGTCGGTTGATCGCCCTGGGCAAG
CGGGCTCTGCTGGTGCTCAACAAAATCGACCGTTACACCCCCGAAGAACGGCGGCTCCTGCTGCAACGGCTGCGGGAACG
GGTTTACCCCTTGATCCAACCGGAAGATGTGCTGCCGGCCGCCGCTGCTCCAGCCCCTGTACAGGTGGGATCCCAAACCT
GGCAGCCGGAACCGGAGGTGGCGGCGGTGCGGGATCGCGTCCAGGCGGTGCTCTACGCCGAGGGGGGATCCCTGGCGTTG
GACAATGCCTTGCTGCAATCCCAGCAACTGGGCGAAGAGGCCAAGCGGATCATCCAGGCGCAGTTGCGCCGCCAGGCGGA
GGAGGTGATCGACCGCTTTCAGTGGATCGTGACCGGCGTGGTCTTTGCCAACCCCATCCCGGCGCTGGATTTGCTGGCCA
TTGCCGCCATCAACGCTCAGATGGTGGTGGAGCTGGGATCCCTCTACGGCTGCAAGATGAACCTGCAGCAGGGGCGGGAG
CTGGCCCTGTCGCTGGCCAAGACCCTGGCCGGCCTGGGGCTGGTGGAGGGGGCGCTCCAACTGACCACCGGGCTCCTGGC
CACCGTGGCTGAGGTGAGCGTGGTTGGCTTTTTGGCGACAGCCCCCATCCAGGCGGCCAGCGCCGGCTATCTCACCCGCA
TTGCCGGCAAAAGCTTCATCGAGTATTTCCAGCGCAACCAAAGCTGGGGGGAAGGGGGGATGCAGGCAGTGGTCAAGGCC
CAGGTGGAGAGCGCCCAAAAATCGGGCTGGCTCAAGGAGTTTGTCCGCCAGGCCTCAGAACGGGTTTTTCGCCTGCGCTA
G

Upstream 100 bases:

>100_bases
TGCCGACAGGCGAGATCTGAGTAGTTGGACATGCTTAGCCGCGGGTAAAGTCAAAAGGACTCCGTCCCGCTGACGCGAAC
GGTTGTGGCCCTGGATCCCT

Downstream 100 bases:

>100_bases
TCCTTGTTGGTGGCCTCGACAGCAATGTCCGTCGGCATGAAGGCCAGCTCCATCTGCGCCACGTAGTCGGCGTAGCTGAG
GGCGGGCACATCGTCCCATT

Product: GTP-binding protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 506; Mature: 506

Protein sequence:

>506_residues
MRTVPYLRLLLLLALLASFAGLIVWLIQSFLDLYYATRYHPILGGLLIGVLVLLLLVFLAASIYYLFLFRPAPKTERLPR
PAPPATPAEKWEAARRNLAQLEAQMAQIQDQVARAALAERSARLAQQLAQPQLKVVVFGTGSAGKTSLVNALLGRRVGAV
GATLGTTQAVAVYDWDLPGIPHPVQIVDCPGILEIGPAGAMREEEAQAQAQAADLLLVVVDGDLRRSEVDPLRRLIALGK
RALLVLNKIDRYTPEERRLLLQRLRERVYPLIQPEDVLPAAAAPAPVQVGSQTWQPEPEVAAVRDRVQAVLYAEGGSLAL
DNALLQSQQLGEEAKRIIQAQLRRQAEEVIDRFQWIVTGVVFANPIPALDLLAIAAINAQMVVELGSLYGCKMNLQQGRE
LALSLAKTLAGLGLVEGALQLTTGLLATVAEVSVVGFLATAPIQAASAGYLTRIAGKSFIEYFQRNQSWGEGGMQAVVKA
QVESAQKSGWLKEFVRQASERVFRLR

Sequences:

>Translated_506_residues
MRTVPYLRLLLLLALLASFAGLIVWLIQSFLDLYYATRYHPILGGLLIGVLVLLLLVFLAASIYYLFLFRPAPKTERLPR
PAPPATPAEKWEAARRNLAQLEAQMAQIQDQVARAALAERSARLAQQLAQPQLKVVVFGTGSAGKTSLVNALLGRRVGAV
GATLGTTQAVAVYDWDLPGIPHPVQIVDCPGILEIGPAGAMREEEAQAQAQAADLLLVVVDGDLRRSEVDPLRRLIALGK
RALLVLNKIDRYTPEERRLLLQRLRERVYPLIQPEDVLPAAAAPAPVQVGSQTWQPEPEVAAVRDRVQAVLYAEGGSLAL
DNALLQSQQLGEEAKRIIQAQLRRQAEEVIDRFQWIVTGVVFANPIPALDLLAIAAINAQMVVELGSLYGCKMNLQQGRE
LALSLAKTLAGLGLVEGALQLTTGLLATVAEVSVVGFLATAPIQAASAGYLTRIAGKSFIEYFQRNQSWGEGGMQAVVKA
QVESAQKSGWLKEFVRQASERVFRLR
>Mature_506_residues
MRTVPYLRLLLLLALLASFAGLIVWLIQSFLDLYYATRYHPILGGLLIGVLVLLLLVFLAASIYYLFLFRPAPKTERLPR
PAPPATPAEKWEAARRNLAQLEAQMAQIQDQVARAALAERSARLAQQLAQPQLKVVVFGTGSAGKTSLVNALLGRRVGAV
GATLGTTQAVAVYDWDLPGIPHPVQIVDCPGILEIGPAGAMREEEAQAQAQAADLLLVVVDGDLRRSEVDPLRRLIALGK
RALLVLNKIDRYTPEERRLLLQRLRERVYPLIQPEDVLPAAAAPAPVQVGSQTWQPEPEVAAVRDRVQAVLYAEGGSLAL
DNALLQSQQLGEEAKRIIQAQLRRQAEEVIDRFQWIVTGVVFANPIPALDLLAIAAINAQMVVELGSLYGCKMNLQQGRE
LALSLAKTLAGLGLVEGALQLTTGLLATVAEVSVVGFLATAPIQAASAGYLTRIAGKSFIEYFQRNQSWGEGGMQAVVKA
QVESAQKSGWLKEFVRQASERVFRLR

Specific function: Exhibits A Very High Intrinsic Gtpase Hydrolysis Rate. Involved In The Biosynthesis Of The Hypermodified Nucleoside 5- Methylaminomethyl-2-Thiouridine, Which Is Found In The Wobble Position Of Some Trnas. [C]

COG id: COG1100

COG function: function code R; GTPase SAR1 and related small G proteins

Gene ontology:

Cell location: Cytoplasmic; may also be associated with the inner membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55078; Mature: 55078

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTVPYLRLLLLLALLASFAGLIVWLIQSFLDLYYATRYHPILGGLLIGVLVLLLLVFLA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASIYYLFLFRPAPKTERLPRPAPPATPAEKWEAARRNLAQLEAQMAQIQDQVARAALAER
HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SARLAQQLAQPQLKVVVFGTGSAGKTSLVNALLGRRVGAVGATLGTTQAVAVYDWDLPGI
HHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
PHPVQIVDCPGILEIGPAGAMREEEAQAQAQAADLLLVVVDGDLRRSEVDPLRRLIALGK
CCCEEEECCCCCEEECCCCCCHHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHHHHHHCH
RALLVLNKIDRYTPEERRLLLQRLRERVYPLIQPEDVLPAAAAPAPVQVGSQTWQPEPEV
HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
AAVRDRVQAVLYAEGGSLALDNALLQSQQLGEEAKRIIQAQLRRQAEEVIDRFQWIVTGV
HHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VFANPIPALDLLAIAAINAQMVVELGSLYGCKMNLQQGRELALSLAKTLAGLGLVEGALQ
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LTTGLLATVAEVSVVGFLATAPIQAASAGYLTRIAGKSFIEYFQRNQSWGEGGMQAVVKA
HHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
QVESAQKSGWLKEFVRQASERVFRLR
HHHHHHHCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRTVPYLRLLLLLALLASFAGLIVWLIQSFLDLYYATRYHPILGGLLIGVLVLLLLVFLA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASIYYLFLFRPAPKTERLPRPAPPATPAEKWEAARRNLAQLEAQMAQIQDQVARAALAER
HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SARLAQQLAQPQLKVVVFGTGSAGKTSLVNALLGRRVGAVGATLGTTQAVAVYDWDLPGI
HHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
PHPVQIVDCPGILEIGPAGAMREEEAQAQAQAADLLLVVVDGDLRRSEVDPLRRLIALGK
CCCEEEECCCCCEEECCCCCCHHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHHHHHHCH
RALLVLNKIDRYTPEERRLLLQRLRERVYPLIQPEDVLPAAAAPAPVQVGSQTWQPEPEV
HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
AAVRDRVQAVLYAEGGSLALDNALLQSQQLGEEAKRIIQAQLRRQAEEVIDRFQWIVTGV
HHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VFANPIPALDLLAIAAINAQMVVELGSLYGCKMNLQQGRELALSLAKTLAGLGLVEGALQ
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LTTGLLATVAEVSVVGFLATAPIQAASAGYLTRIAGKSFIEYFQRNQSWGEGGMQAVVKA
HHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
QVESAQKSGWLKEFVRQASERVFRLR
HHHHHHHCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA